Wall clock time and date at job start Tue Mar 31 2020 13:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99842 * 2 1 4 4 H 1.48503 * 109.47023 * 94.99622 * 3 2 1 5 5 H 1.48502 * 109.46823 * 214.99088 * 3 2 1 6 6 H 1.48495 * 109.47079 * 334.99367 * 3 2 1 7 7 C 1.37877 * 120.00479 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99309 * 6.05207 * 7 2 1 9 9 C 1.50694 * 120.00463 * 186.05077 * 7 2 1 10 10 H 1.09000 * 109.47378 * 4.44789 * 9 7 2 11 11 O 1.42897 * 109.47596 * 124.45635 * 9 7 2 12 12 C 1.35719 * 116.99645 * 270.00262 * 11 9 7 13 13 C 1.39228 * 120.11503 * 179.97438 * 12 11 9 14 14 C 1.38729 * 117.91687 * 179.97438 * 13 12 11 15 15 Cl 1.73605 * 121.01524 * 180.02562 * 14 13 12 16 16 C 1.39063 * 117.97819 * 0.02562 * 14 13 12 17 17 Cl 1.73599 * 120.04208 * 180.02562 * 16 14 13 18 18 N 1.31865 * 119.91508 * 0.02562 * 16 14 13 19 19 N 1.28338 * 122.25908 * 359.70360 * 18 16 14 20 20 C 1.50703 * 109.46954 * 244.45413 * 9 7 2 21 21 C 1.38236 * 120.00005 * 278.35266 * 20 9 7 22 22 C 1.38235 * 119.99948 * 179.81495 * 21 20 9 23 23 C 1.38230 * 120.00038 * 0.39072 * 22 21 20 24 24 C 1.38230 * 120.00222 * 359.86295 * 23 22 21 25 25 C 1.38233 * 120.00264 * 98.62510 * 20 9 7 26 26 H 0.96996 * 120.00178 * 0.02562 * 1 2 3 27 27 H 1.08005 * 121.04573 * 359.97438 * 13 12 11 28 28 H 1.07997 * 119.99824 * 359.97438 * 21 20 9 29 29 H 1.08001 * 119.99976 * 180.23226 * 22 21 20 30 30 H 1.08003 * 120.00286 * 179.83788 * 23 22 21 31 31 H 1.07996 * 120.00494 * 179.97438 * 24 23 22 32 32 H 1.08003 * 119.99876 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6022 1.9855 1.3948 5 1 3.4899 1.4730 -0.8029 6 1 1.3977 2.6808 -0.5918 7 6 2.0046 -1.1940 0.0005 8 1 1.4690 -2.1268 -0.0977 9 6 3.5052 -1.1976 0.1381 10 1 3.8573 -0.1794 0.3041 11 8 3.8801 -2.0179 1.2464 12 6 3.9768 -1.4116 2.4568 13 6 4.3369 -2.1497 3.5811 14 6 4.4225 -1.4839 4.7951 15 17 4.8653 -2.3254 6.2476 16 6 4.1429 -0.1218 4.8133 17 17 4.2343 0.7644 6.3033 18 7 3.8082 0.4958 3.6973 19 7 3.7331 -0.1162 2.5718 20 6 4.1239 -1.7436 -1.1229 21 6 4.2052 -3.1098 -1.3175 22 6 4.7692 -3.6106 -2.4759 23 6 5.2593 -2.7455 -3.4361 24 6 5.1828 -1.3794 -3.2392 25 6 4.6153 -0.8785 -2.0826 26 1 -0.4850 0.8400 -0.0004 27 1 4.5432 -3.2075 3.5103 28 1 3.8257 -3.7858 -0.5656 29 1 4.8293 -4.6780 -2.6295 30 1 5.7024 -3.1368 -4.3400 31 1 5.5661 -0.7034 -3.9892 32 1 4.5554 0.1889 -1.9288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228992982.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:59 Heat of formation + Delta-G solvation = 41.316129 kcal Electronic energy + Delta-G solvation = -22031.411875 eV Core-core repulsion = 18431.176266 eV Total energy + Delta-G solvation = -3600.235608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 324.017 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.06523 -38.99080 -37.70039 -37.02327 -36.69017 -33.42135 -32.73227 -31.70906 -30.70937 -30.33020 -27.53234 -24.87866 -24.23609 -22.93317 -22.05488 -20.57560 -18.18189 -18.02922 -17.34010 -17.08277 -16.30059 -15.69262 -15.15347 -14.76278 -14.48725 -14.19856 -13.80574 -13.73551 -13.18914 -12.94140 -12.81528 -12.52265 -12.29321 -12.02906 -11.85656 -11.75294 -11.43036 -11.24809 -11.16006 -10.77770 -10.58626 -10.23696 -9.88691 -9.86877 -9.66464 -9.39457 -8.82660 -8.60221 -8.40097 -8.04329 -6.40408 -4.49796 0.55277 0.95074 1.49039 1.67994 1.90165 1.93176 3.23127 3.28988 3.37283 3.49304 3.52770 4.12415 4.26555 4.34863 4.50736 4.68243 4.98387 5.07784 5.38187 5.40714 5.46602 5.60099 5.62828 5.88403 6.03676 6.14718 6.25535 6.51267 6.58362 6.97003 6.99936 7.12521 7.21923 7.53238 7.66382 8.13919 8.65428 8.69221 9.18760 10.68532 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.013837 B = 0.004607 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.051567 B = 6075.926209 C = 7283.708824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.096 3.904 3 Si 0.865 3.135 4 H -0.235 1.235 5 H -0.265 1.265 6 H -0.289 1.289 7 C -0.531 4.531 8 H 0.084 0.916 9 C 0.204 3.796 10 H 0.068 0.932 11 O -0.295 6.295 12 C 0.317 3.683 13 C -0.129 4.129 14 C 0.001 3.999 15 Cl -0.022 7.022 16 C 0.065 3.935 17 Cl -0.006 7.006 18 N -0.169 5.169 19 N -0.265 5.265 20 C -0.038 4.038 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.123 4.123 26 H 0.273 0.727 27 H 0.171 0.829 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -3.687 6.214 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.113 4.113 3 Si 0.690 3.310 4 H -0.159 1.159 5 H -0.191 1.191 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.102 0.898 9 C 0.152 3.848 10 H 0.086 0.914 11 O -0.197 6.197 12 C 0.132 3.868 13 C -0.160 4.160 14 C -0.037 4.037 15 Cl 0.007 6.993 16 C -0.109 4.109 17 Cl 0.022 6.978 18 N -0.015 5.015 19 N -0.125 5.125 20 C -0.039 4.039 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.083 0.917 27 H 0.188 0.812 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.659 -2.516 5.555 12.280 hybrid contribution 0.437 -0.338 0.738 0.922 sum 11.096 -2.854 6.294 13.071 Atomic orbital electron populations 1.69883 1.06646 1.28208 1.45340 1.25061 0.94790 0.99541 0.91873 0.87030 0.79668 0.82669 0.81589 1.15856 1.19065 1.21556 1.21007 0.87512 0.95762 1.52348 0.89820 1.19617 0.96030 0.90705 0.78492 0.91383 1.86408 1.79798 1.40435 1.13102 1.21447 0.87472 0.89363 0.88530 1.21520 1.03081 1.03024 0.88424 1.21610 1.00551 0.91376 0.90196 1.98405 1.90387 1.76867 1.33643 1.23154 1.06313 0.89200 0.92256 1.98394 1.96546 1.75873 1.27009 1.72855 1.05972 1.29576 0.93125 1.73307 1.16959 1.07782 1.14493 1.19964 0.93795 0.93706 0.96419 1.20946 0.98999 0.95067 0.97305 1.21050 0.99651 0.99077 0.94423 1.20945 1.02273 0.93584 0.99215 1.20961 1.00402 0.95307 0.97202 1.21006 0.98954 0.99772 0.94413 0.91743 0.81157 0.86055 0.86783 0.86950 0.86695 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.23 13.96 55.43 0.77 -24.45 16 2 C 0.10 2.64 5.47 -17.82 -0.10 2.54 16 3 Si 0.86 20.87 25.90 -169.99 -4.40 16.46 16 4 H -0.24 -5.69 6.83 56.52 0.39 -5.31 16 5 H -0.27 -5.99 5.37 56.52 0.30 -5.69 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.53 -14.21 9.17 -34.44 -0.32 -14.52 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 9 C 0.20 4.68 2.03 -29.04 -0.06 4.63 16 10 H 0.07 1.60 3.63 -51.93 -0.19 1.41 16 11 O -0.29 -6.19 9.03 -18.86 -0.17 -6.36 16 12 C 0.32 6.21 7.53 -16.98 -0.13 6.09 16 13 C -0.13 -1.99 9.98 -39.03 -0.39 -2.38 16 14 C 0.00 0.01 6.39 -39.09 -0.25 -0.24 16 15 Cl -0.02 -0.25 28.14 -51.86 -1.46 -1.71 16 16 C 0.07 1.07 7.37 -17.23 -0.13 0.95 16 17 Cl -0.01 -0.08 28.25 -51.86 -1.46 -1.55 16 18 N -0.17 -3.36 11.48 32.92 0.38 -2.98 16 19 N -0.27 -5.71 8.51 30.50 0.26 -5.45 16 20 C -0.04 -0.80 4.96 -104.62 -0.52 -1.32 16 21 C -0.10 -1.96 9.36 -39.58 -0.37 -2.33 16 22 C -0.12 -1.97 10.05 -39.59 -0.40 -2.37 16 23 C -0.14 -2.15 10.05 -39.59 -0.40 -2.55 16 24 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.12 -2.37 9.67 -39.58 -0.38 -2.76 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.17 2.06 8.06 -52.48 -0.42 1.64 16 28 H 0.12 2.20 7.73 -52.49 -0.41 1.80 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.12 2.30 6.59 -52.48 -0.35 1.95 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -28.93 313.19 -7.50 -36.44 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -2.30 Total: 1.50 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -3.83 Total: -16.61 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 1.41 Total: -32.88 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.17 Total: -6.36 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.40 Total: 16.46 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -2.92 Total: -3.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.93 -7.50 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228992982.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.752 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds