Wall clock time and date at job start Tue Mar 31 2020 14:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46848 * 240.00038 * 3 2 1 5 5 H 1.48501 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47218 * 120.00059 * 3 2 1 7 7 C 1.37876 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00209 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.35897 * 116.99744 * 180.02562 * 10 9 7 12 12 C 1.38822 * 119.92994 * 180.02562 * 11 10 9 13 13 C 1.37915 * 120.06605 * 180.02562 * 12 11 10 14 14 C 1.39383 * 119.93217 * 359.97438 * 13 12 11 15 15 C 1.48338 * 120.06990 * 180.02562 * 14 13 12 16 16 C 1.39556 * 120.14509 * 114.99662 * 15 14 13 17 17 F 1.35106 * 120.05728 * 359.96123 * 16 15 14 18 18 C 1.38224 * 119.87657 * 179.97438 * 16 15 14 19 19 C 1.38315 * 120.15575 * 0.27826 * 18 16 15 20 20 C 1.38364 * 120.28565 * 359.44670 * 19 18 16 21 21 Cl 1.73598 * 119.93977 * 180.25437 * 20 19 18 22 22 C 1.38379 * 120.12190 * 0.54935 * 20 19 18 23 23 F 1.35101 * 120.08406 * 179.74538 * 22 20 19 24 24 C 1.39386 * 119.86834 * 0.27179 * 14 13 12 25 25 C 1.37924 * 119.92684 * 359.44860 * 24 14 13 26 26 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47154 * 60.00231 * 9 7 2 28 28 H 1.09001 * 109.47661 * 299.99724 * 9 7 2 29 29 H 1.07994 * 119.96867 * 359.97438 * 12 11 10 30 30 H 1.08000 * 120.03348 * 179.97438 * 13 12 11 31 31 H 1.08002 * 119.91781 * 179.97438 * 18 16 15 32 32 H 1.08003 * 119.85840 * 179.69952 * 19 18 16 33 33 H 1.07998 * 120.04078 * 179.72445 * 24 14 13 34 34 H 1.08001 * 119.96458 * 180.29090 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6604 -4.8410 0.0000 12 6 2.5074 -5.9409 0.0005 13 6 1.9833 -7.2166 -0.0006 14 6 0.6017 -7.4009 -0.0016 15 6 0.0347 -8.7716 -0.0022 16 6 -0.7053 -9.2244 1.0909 17 9 -0.9066 -8.4150 2.1538 18 6 -1.2315 -10.5025 1.0843 19 6 -1.0215 -11.3348 -0.0003 20 6 -0.2937 -10.8907 -1.0900 21 17 -0.0411 -11.9406 -2.4493 22 6 0.2384 -9.6133 -1.0958 23 9 0.9533 -9.1823 -2.1580 24 6 -0.2462 -6.2945 -0.0073 25 6 0.2840 -5.0213 -0.0004 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.5777 -5.7975 0.0009 30 1 2.6427 -8.0719 -0.0006 31 1 -1.8039 -10.8538 1.9301 32 1 -1.4308 -12.3343 0.0017 33 1 -1.3171 -6.4341 -0.0127 34 1 -0.3725 -4.1636 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245722793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:53 Heat of formation + Delta-G solvation = -89.876796 kcal Electronic energy + Delta-G solvation = -23416.695515 eV Core-core repulsion = 19362.514618 eV Total energy + Delta-G solvation = -4054.180897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.21476 -49.19244 -39.75314 -38.99957 -37.09936 -36.57210 -33.05218 -32.23966 -30.80990 -30.49117 -28.73064 -27.35849 -23.95830 -23.43150 -23.10456 -21.84301 -20.88361 -18.51726 -17.68838 -17.62443 -16.95471 -16.60579 -16.26237 -16.04591 -15.53782 -15.28661 -15.11979 -14.68315 -14.66333 -14.46793 -14.03133 -13.54632 -13.24625 -13.18129 -12.93666 -12.73673 -12.57086 -12.06791 -11.85698 -11.67098 -11.53877 -11.22167 -11.04028 -11.02176 -10.65437 -10.25221 -10.21511 -9.38036 -9.28480 -8.98204 -8.74855 -8.61240 -7.57045 -6.28460 -4.32675 0.38621 0.46786 1.52762 1.66432 1.72246 2.82923 3.24096 3.27108 3.30288 3.44620 3.88534 4.03450 4.06609 4.13734 4.41596 4.47162 4.51657 5.04895 5.08778 5.16031 5.20544 5.33400 5.40405 5.45845 5.54079 5.63349 5.80120 5.98831 6.16617 6.29610 6.55092 6.65625 6.69663 6.90459 7.08240 7.11545 7.63394 7.90099 8.37850 8.78627 9.32700 10.82693 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.026210 B = 0.002520 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.045607 B =11107.589597 C =11621.181121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.191 3.809 10 O -0.313 6.313 11 C 0.170 3.830 12 C -0.169 4.169 13 C -0.052 4.052 14 C -0.135 4.135 15 C -0.080 4.080 16 C 0.143 3.857 17 F -0.117 7.117 18 C -0.153 4.153 19 C -0.060 4.060 20 C -0.088 4.088 21 Cl -0.045 7.045 22 C 0.148 3.852 23 F -0.110 7.110 24 C -0.046 4.046 25 C -0.212 4.212 26 H 0.268 0.732 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.120 0.880 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.498 -24.752 0.267 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.089 0.911 9 C 0.119 3.881 10 O -0.225 6.225 11 C 0.122 3.878 12 C -0.188 4.188 13 C -0.070 4.070 14 C -0.135 4.135 15 C -0.082 4.082 16 C 0.124 3.876 17 F -0.095 7.095 18 C -0.172 4.172 19 C -0.078 4.078 20 C -0.116 4.116 21 Cl -0.016 7.016 22 C 0.127 3.873 23 F -0.088 7.088 24 C -0.065 4.065 25 C -0.231 4.231 26 H 0.078 0.922 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.149 0.851 30 H 0.140 0.860 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.138 0.862 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.412 -24.563 0.138 24.800 hybrid contribution 0.127 1.051 -0.141 1.068 sum -3.285 -23.512 -0.003 23.741 Atomic orbital electron populations 1.69936 1.06142 1.27815 1.49322 1.24937 0.95062 0.99570 0.94580 0.86287 0.79279 0.81314 0.79027 1.19815 1.20957 1.19809 1.20927 0.94269 0.88687 1.52567 0.91127 1.20705 0.88657 0.81704 0.97043 1.86144 1.39289 1.11822 1.85234 1.19420 0.91606 0.86630 0.90188 1.20331 0.99876 0.90084 1.08488 1.20759 0.93186 0.96367 0.96685 1.17976 0.93555 0.89439 1.12558 1.18722 1.01378 0.95350 0.92764 1.17517 0.97359 0.88673 0.84097 1.91587 1.92664 1.72257 1.53008 1.21097 1.03173 0.92280 1.00661 1.20777 0.96113 1.00576 0.90359 1.20909 1.05712 0.91617 0.93366 1.98398 1.95655 1.64782 1.42757 1.17122 0.94420 0.90844 0.84912 1.91595 1.74696 1.89661 1.52869 1.20834 0.98792 0.91077 0.95756 1.21397 0.94921 0.98213 1.08556 0.92206 0.95891 0.95863 0.85089 0.85990 0.82974 0.82985 0.86229 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.53 -14.94 9.43 -34.45 -0.32 -15.26 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.04 4.49 36.00 0.16 5.20 16 10 O -0.31 -7.50 10.12 -19.42 -0.20 -7.70 16 11 C 0.17 3.45 6.69 -39.15 -0.26 3.19 16 12 C -0.17 -2.90 9.97 -39.48 -0.39 -3.29 16 13 C -0.05 -0.78 9.55 -39.27 -0.38 -1.15 16 14 C -0.13 -2.02 4.70 -104.89 -0.49 -2.52 16 15 C -0.08 -1.00 5.32 -104.78 -0.56 -1.56 16 16 C 0.14 1.56 7.24 -39.09 -0.28 1.27 16 17 F -0.12 -1.46 16.68 2.25 0.04 -1.42 16 18 C -0.15 -1.16 10.01 -39.56 -0.40 -1.56 16 19 C -0.06 -0.42 9.82 -39.51 -0.39 -0.81 16 20 C -0.09 -0.84 6.32 -39.48 -0.25 -1.09 16 21 Cl -0.04 -0.41 28.61 -51.86 -1.48 -1.89 16 22 C 0.15 1.74 7.21 -39.06 -0.28 1.46 16 23 F -0.11 -1.47 16.24 2.25 0.04 -1.44 16 24 C -0.05 -0.75 9.57 -39.27 -0.38 -1.12 16 25 C -0.21 -4.01 9.02 -39.48 -0.36 -4.36 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.02 0.63 7.65 -51.93 -0.40 0.23 16 28 H 0.02 0.63 7.66 -51.93 -0.40 0.24 16 29 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.14 2.73 6.28 -52.49 -0.33 2.40 16 LS Contribution 328.59 15.07 4.95 4.95 Total: -1.00 -29.73 328.59 -8.39 -38.12 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -2.78 Total: -1.77 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -4.67 Total: -20.01 kcal Atomic # 7 Polarization: -25.71 SS G_CDS: 0.74 Total: -24.98 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.20 Total: -7.70 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.85 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.73 -8.39 -38.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245722793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.753 kcal (2) G-P(sol) polarization free energy of solvation -29.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds