Wall clock time and date at job start Tue Mar 31 2020 14:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99878 * 2 1 4 4 H 1.48503 * 109.46848 * 240.00038 * 3 2 1 5 5 H 1.48501 * 109.46889 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47218 * 120.00059 * 3 2 1 7 7 C 1.37876 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00209 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46903 * 179.97438 * 9 7 2 11 11 C 1.35897 * 116.99744 * 180.02562 * 10 9 7 12 12 C 1.38822 * 119.92994 * 180.02562 * 11 10 9 13 13 C 1.37915 * 120.06605 * 180.02562 * 12 11 10 14 14 C 1.39383 * 119.93217 * 359.97438 * 13 12 11 15 15 C 1.48338 * 120.06990 * 180.02562 * 14 13 12 16 16 C 1.39556 * 120.14509 * 114.99662 * 15 14 13 17 17 F 1.35106 * 120.05728 * 359.96123 * 16 15 14 18 18 C 1.38224 * 119.87657 * 179.97438 * 16 15 14 19 19 C 1.38315 * 120.15575 * 0.27826 * 18 16 15 20 20 C 1.38364 * 120.28565 * 359.44670 * 19 18 16 21 21 Cl 1.73598 * 119.93977 * 180.25437 * 20 19 18 22 22 C 1.38379 * 120.12190 * 0.54935 * 20 19 18 23 23 F 1.35101 * 120.08406 * 179.74538 * 22 20 19 24 24 C 1.39386 * 119.86834 * 0.27179 * 14 13 12 25 25 C 1.37924 * 119.92684 * 359.44860 * 24 14 13 26 26 H 0.97000 * 120.00127 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47154 * 60.00231 * 9 7 2 28 28 H 1.09001 * 109.47661 * 299.99724 * 9 7 2 29 29 H 1.07994 * 119.96867 * 359.97438 * 12 11 10 30 30 H 1.08000 * 120.03348 * 179.97438 * 13 12 11 31 31 H 1.08002 * 119.91781 * 179.97438 * 18 16 15 32 32 H 1.08003 * 119.85840 * 179.69952 * 19 18 16 33 33 H 1.07998 * 120.04078 * 179.72445 * 24 14 13 34 34 H 1.08001 * 119.96458 * 180.29090 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6604 -4.8410 0.0000 12 6 2.5074 -5.9409 0.0005 13 6 1.9833 -7.2166 -0.0006 14 6 0.6017 -7.4009 -0.0016 15 6 0.0347 -8.7716 -0.0022 16 6 -0.7053 -9.2244 1.0909 17 9 -0.9066 -8.4150 2.1538 18 6 -1.2315 -10.5025 1.0843 19 6 -1.0215 -11.3348 -0.0003 20 6 -0.2937 -10.8907 -1.0900 21 17 -0.0411 -11.9406 -2.4493 22 6 0.2384 -9.6133 -1.0958 23 9 0.9533 -9.1823 -2.1580 24 6 -0.2462 -6.2945 -0.0073 25 6 0.2840 -5.0213 -0.0004 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.5777 -5.7975 0.0009 30 1 2.6427 -8.0719 -0.0006 31 1 -1.8039 -10.8538 1.9301 32 1 -1.4308 -12.3343 0.0017 33 1 -1.3171 -6.4341 -0.0127 34 1 -0.3725 -4.1636 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245722793.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:52 Heat of formation + Delta-G solvation = -104.410322 kcal Electronic energy + Delta-G solvation = -23417.325736 eV Core-core repulsion = 19362.514618 eV Total energy + Delta-G solvation = -4054.811118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.14775 -50.08166 -41.09749 -40.01452 -38.39081 -37.51298 -35.11813 -33.35627 -32.17336 -31.26952 -30.28905 -29.03008 -25.56629 -24.65115 -24.03270 -23.23541 -22.21993 -19.42871 -19.22941 -18.59450 -18.44808 -17.97011 -17.31389 -16.93005 -16.87455 -16.54167 -16.45374 -16.27625 -16.14499 -15.46964 -15.39100 -14.69800 -14.44964 -14.24624 -14.00430 -13.85608 -13.84396 -13.55278 -13.29969 -13.05222 -12.82977 -12.60188 -12.43659 -12.27485 -12.02456 -11.97778 -11.92916 -11.40557 -10.74537 -10.19147 -10.09074 -9.75395 -9.06188 -8.41783 -6.56607 -0.41550 -0.31330 0.29020 0.32578 0.87049 1.38137 1.42916 1.51390 2.07880 2.24272 2.62438 2.64828 2.65732 2.93012 3.12913 3.23326 3.66148 3.77193 3.81372 3.90604 4.20917 4.26833 4.38547 4.58057 4.61877 4.65211 4.70570 4.81762 4.84659 4.92415 4.95138 5.15533 5.32538 5.35738 5.48775 5.49483 5.72995 5.79887 6.45392 6.72007 7.15293 8.70267 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.026210 B = 0.002520 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.045607 B =11107.589597 C =11621.181121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.211 3.789 10 O -0.333 6.333 11 C 0.125 3.875 12 C -0.165 4.165 13 C -0.049 4.049 14 C -0.117 4.117 15 C -0.104 4.104 16 C 0.132 3.868 17 F -0.131 7.131 18 C -0.131 4.131 19 C -0.038 4.038 20 C -0.089 4.089 21 Cl -0.041 7.041 22 C 0.133 3.867 23 F -0.126 7.126 24 C -0.051 4.051 25 C -0.223 4.223 26 H 0.275 0.725 27 H 0.002 0.998 28 H 0.003 0.997 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.138 0.862 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -27.415 0.716 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.598 4.598 8 H 0.086 0.914 9 C 0.138 3.862 10 O -0.247 6.247 11 C 0.078 3.922 12 C -0.183 4.183 13 C -0.067 4.067 14 C -0.117 4.117 15 C -0.106 4.106 16 C 0.112 3.888 17 F -0.109 7.109 18 C -0.150 4.150 19 C -0.056 4.056 20 C -0.117 4.117 21 Cl -0.012 7.012 22 C 0.112 3.888 23 F -0.104 7.104 24 C -0.069 4.069 25 C -0.242 4.242 26 H 0.083 0.917 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.162 0.838 30 H 0.171 0.829 31 H 0.206 0.794 32 H 0.209 0.791 33 H 0.156 0.844 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.688 -27.264 0.586 27.519 hybrid contribution 0.109 1.561 -0.283 1.590 sum -3.579 -25.703 0.303 25.953 Atomic orbital electron populations 1.70047 1.07765 1.29187 1.49337 1.25976 0.96036 1.03403 0.93365 0.85155 0.78081 0.76216 0.79527 1.18886 1.19751 1.18818 1.21294 0.94438 0.90119 1.53900 0.91411 1.20219 0.88427 0.82558 0.95035 1.86057 1.38831 1.12840 1.86958 1.19782 0.92805 0.85873 0.93699 1.20566 1.00317 0.89915 1.07522 1.21128 0.93890 0.96293 0.95350 1.18304 0.93557 0.90781 1.09093 1.18572 1.03501 0.94163 0.94354 1.17759 0.97787 0.89836 0.83374 1.91562 1.92836 1.72939 1.53551 1.21476 1.01579 0.90381 1.01574 1.21259 0.93846 1.01847 0.88630 1.21072 1.05576 0.90825 0.94208 1.98407 1.95659 1.64301 1.42801 1.17244 0.95277 0.91786 0.84471 1.91554 1.75287 1.90001 1.53602 1.21028 1.00060 0.90294 0.95494 1.21325 0.94351 0.98922 1.09637 0.91652 0.97972 0.97879 0.83758 0.82859 0.79450 0.79104 0.84374 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 2 C 0.01 0.68 5.46 84.65 0.46 1.14 16 3 Si 0.99 43.71 29.54 68.60 2.03 45.74 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.56 -33.20 9.43 25.60 0.24 -32.96 16 8 H 0.07 3.94 7.81 -2.91 -0.02 3.92 16 9 C 0.21 11.94 4.49 71.23 0.32 12.26 16 10 O -0.33 -17.14 10.12 -92.39 -0.93 -18.07 16 11 C 0.13 5.39 6.69 22.55 0.15 5.54 16 12 C -0.16 -5.77 9.97 22.33 0.22 -5.55 16 13 C -0.05 -1.44 9.55 22.47 0.21 -1.22 16 14 C -0.12 -3.46 4.70 -20.04 -0.09 -3.55 16 15 C -0.10 -2.42 5.32 -19.97 -0.11 -2.53 16 16 C 0.13 2.53 7.24 22.58 0.16 2.70 16 17 F -0.13 -3.04 16.68 44.97 0.75 -2.29 16 18 C -0.13 -1.41 10.01 22.28 0.22 -1.19 16 19 C -0.04 -0.36 9.82 22.32 0.22 -0.14 16 20 C -0.09 -1.41 6.32 22.33 0.14 -1.27 16 21 Cl -0.04 -0.63 28.61 -2.72 -0.08 -0.71 16 22 C 0.13 2.87 7.21 22.61 0.16 3.04 16 23 F -0.13 -3.26 16.24 44.97 0.73 -2.53 16 24 C -0.05 -1.68 9.57 22.47 0.22 -1.47 16 25 C -0.22 -9.07 9.02 22.33 0.20 -8.86 16 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 27 H 0.00 0.15 7.65 -2.39 -0.02 0.13 16 28 H 0.00 0.20 7.66 -2.39 -0.02 0.18 16 29 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 30 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 31 H 0.19 0.76 8.06 -2.91 -0.02 0.73 16 32 H 0.19 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 34 H 0.12 5.16 6.28 -2.91 -0.02 5.14 16 Total: -1.00 -68.23 328.59 6.67 -61.56 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.16 Total: 4.87 kcal Atomic # 6 Polarization: -36.80 SS G_CDS: 2.74 Total: -34.06 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.28 Total: -54.51 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.93 Total: -18.07 kcal Atomic # 9 Polarization: -6.30 SS G_CDS: 1.48 Total: -4.82 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -68.23 6.67 -61.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245722793.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.847 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds