Wall clock time and date at job start Tue Mar 31 2020 14:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48501 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47115 * 299.99355 * 3 2 1 6 6 H 1.48498 * 109.47378 * 59.99772 * 3 2 1 7 7 C 1.39995 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00651 * 197.87328 * 7 2 1 9 9 C 1.40947 * 120.00142 * 17.87711 * 7 2 1 10 10 C 1.40949 * 120.13076 * 24.79918 * 9 7 2 11 11 C 1.36195 * 119.89846 * 179.72155 * 10 9 7 12 12 C 1.40029 * 120.18442 * 0.23630 * 11 10 9 13 13 C 1.47974 * 119.86508 * 179.97438 * 12 11 10 14 14 C 1.39630 * 120.13704 * 129.99683 * 13 12 11 15 15 C 1.37908 * 119.91115 * 180.02562 * 14 13 12 16 16 C 1.38396 * 120.20351 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.86290 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47212 * 359.97438 * 17 16 15 19 19 C 1.38531 * 120.28128 * 359.97438 * 16 15 14 20 20 F 1.35101 * 119.96280 * 180.02562 * 19 16 15 21 21 C 1.38324 * 120.07779 * 359.72544 * 19 16 15 22 22 Cl 1.73601 * 120.09999 * 180.27894 * 21 19 16 23 23 C 1.39795 * 120.27382 * 0.02562 * 12 11 10 24 24 C 1.36564 * 120.09911 * 359.97438 * 23 12 11 25 25 F 1.35097 * 120.09395 * 180.02562 * 24 23 12 26 26 H 0.96997 * 120.00230 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.05074 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.90678 * 180.25394 * 11 10 9 29 29 H 1.07993 * 120.04669 * 0.03035 * 14 13 12 30 30 H 1.08006 * 119.89701 * 180.02562 * 15 14 13 31 31 H 1.09000 * 109.47382 * 120.00068 * 17 16 15 32 32 H 1.09005 * 109.46899 * 239.99815 * 17 16 15 33 33 H 0.96700 * 113.99906 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.95335 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3463 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0081 -1.2124 0.0005 8 1 3.0491 -1.2350 0.2876 9 6 1.3545 -2.4038 -0.3736 10 6 0.2270 -2.3569 -1.2182 11 6 -0.3976 -3.5115 -1.5814 12 6 0.0743 -4.7443 -1.1141 13 6 -0.6101 -5.9942 -1.5126 14 6 0.1271 -7.0657 -2.0207 15 6 -0.5156 -8.2283 -2.3912 16 6 -1.8892 -8.3362 -2.2615 17 6 -2.5835 -9.6104 -2.6682 18 8 -1.6175 -10.5459 -3.1517 19 6 -2.6286 -7.2783 -1.7585 20 9 -3.9692 -7.3908 -1.6342 21 6 -1.9953 -6.1090 -1.3774 22 17 -2.9205 -4.7855 -0.7402 23 6 1.1885 -4.7990 -0.2716 24 6 1.8235 -3.6483 0.0997 25 9 2.9006 -3.7014 0.9134 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1380 -1.4075 -1.5808 28 1 -1.2589 -3.4761 -2.2318 29 1 1.1990 -6.9843 -2.1233 30 1 0.0549 -9.0572 -2.7837 31 1 -3.1002 -10.0336 -1.8068 32 1 -3.3060 -9.3951 -3.4556 33 1 -1.9945 -11.3910 -3.4323 34 1 1.5483 -5.7526 0.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245880993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:24 Heat of formation + Delta-G solvation = -111.783384 kcal Electronic energy + Delta-G solvation = -23835.822029 eV Core-core repulsion = 19780.691191 eV Total energy + Delta-G solvation = -4055.130838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.85273 -47.32145 -39.29255 -37.58415 -36.70466 -35.95845 -34.15130 -31.94107 -30.26661 -29.55996 -29.24499 -26.75693 -24.52889 -22.69923 -22.03196 -20.92593 -20.39704 -17.80637 -17.60688 -17.31262 -16.11813 -16.00535 -15.90429 -15.66333 -15.19241 -14.78447 -14.64439 -14.34686 -14.26657 -14.09330 -13.52347 -13.18529 -12.82153 -12.71718 -12.52786 -12.03609 -11.85511 -11.57754 -11.45532 -11.37616 -11.16376 -11.14417 -10.83123 -10.67282 -10.42830 -10.32805 -9.86879 -9.74914 -9.46963 -8.51705 -8.45160 -7.64198 -7.41050 -7.04360 -4.58733 1.13609 1.24495 2.43809 2.48275 2.78455 2.94703 2.98035 3.01894 3.67948 3.74170 3.91981 4.24748 4.38536 4.70877 5.03310 5.15050 5.23237 5.25641 5.36095 5.41249 5.81557 5.89607 5.97987 6.10175 6.20252 6.33528 6.44164 6.56538 6.77230 6.86793 6.95174 7.00292 7.35538 7.36769 7.44191 7.78065 7.84039 7.91330 8.33879 8.48873 8.65124 9.85285 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.003434 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.329330 B = 8151.563399 C = 9019.138633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.435 4.435 8 H 0.088 0.912 9 C 0.098 3.902 10 C -0.156 4.156 11 C -0.064 4.064 12 C -0.197 4.197 13 C 0.053 3.947 14 C -0.129 4.129 15 C -0.061 4.061 16 C -0.149 4.149 17 C 0.129 3.871 18 O -0.567 6.567 19 C 0.113 3.887 20 F -0.134 7.134 21 C -0.084 4.084 22 Cl -0.041 7.041 23 C -0.084 4.084 24 C -0.034 4.034 25 F -0.163 7.163 26 H 0.287 0.713 27 H 0.126 0.874 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.383 0.617 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.880 -11.853 -5.243 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.148 4.148 3 Si 0.739 3.261 4 H -0.180 1.180 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.462 4.462 8 H 0.106 0.894 9 C 0.094 3.906 10 C -0.176 4.176 11 C -0.082 4.082 12 C -0.198 4.198 13 C 0.052 3.948 14 C -0.147 4.147 15 C -0.079 4.079 16 C -0.151 4.151 17 C 0.051 3.949 18 O -0.372 6.372 19 C 0.092 3.908 20 F -0.112 7.112 21 C -0.112 4.112 22 Cl -0.012 7.012 23 C -0.103 4.103 24 C -0.054 4.054 25 F -0.142 7.142 26 H 0.098 0.902 27 H 0.144 0.856 28 H 0.115 0.885 29 H 0.154 0.846 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.786 -11.063 -4.981 13.043 hybrid contribution -0.391 0.399 0.209 0.596 sum -5.177 -10.664 -4.772 12.779 Atomic orbital electron populations 1.69816 1.07813 1.30105 1.31502 1.26049 0.94838 1.01914 0.91972 0.86121 0.81125 0.79967 0.78906 1.17987 1.19292 1.19595 1.19710 0.98634 0.91050 1.36791 0.89401 1.17739 0.92110 0.90906 0.89845 1.20791 0.98804 0.97302 1.00681 1.20491 0.97634 0.91658 0.98451 1.17527 1.01340 0.90350 1.10601 1.18724 0.89263 0.94276 0.92489 1.21414 1.00684 0.92377 1.00238 1.20805 0.92635 0.97691 0.96817 1.19442 0.94879 0.94527 1.06209 1.20619 0.89481 0.86984 0.97771 1.86428 1.36471 1.28320 1.86031 1.16942 0.77100 0.93809 1.02902 1.91478 1.29542 1.96359 1.93849 1.21065 0.93054 0.90088 1.07002 1.98381 1.72453 1.45486 1.84850 1.20161 0.95468 0.96001 0.98695 1.17330 0.91699 0.94655 1.01723 1.91285 1.53870 1.97291 1.71776 0.90160 0.85594 0.88462 0.84566 0.84109 0.92253 0.92264 0.77010 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.55 10.96 55.55 0.61 -17.94 16 2 C 0.07 1.73 5.13 -17.33 -0.09 1.64 16 3 Si 0.92 17.55 29.60 -169.99 -5.03 12.52 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.43 -11.06 8.76 -37.90 -0.33 -11.39 16 8 H 0.09 2.21 7.73 -52.49 -0.41 1.80 16 9 C 0.10 2.50 5.58 -106.73 -0.60 1.90 16 10 C -0.16 -3.80 8.63 -39.29 -0.34 -4.14 16 11 C -0.06 -1.41 8.10 -39.65 -0.32 -1.73 16 12 C -0.20 -4.14 5.13 -104.65 -0.54 -4.67 16 13 C 0.05 0.98 5.47 -104.86 -0.57 0.40 16 14 C -0.13 -2.01 9.50 -39.18 -0.37 -2.38 16 15 C -0.06 -0.86 9.36 -39.64 -0.37 -1.23 16 16 C -0.15 -2.08 5.89 -104.45 -0.62 -2.70 16 17 C 0.13 1.35 7.00 36.01 0.25 1.60 16 18 O -0.57 -5.33 12.12 -35.23 -0.43 -5.76 16 19 C 0.11 1.78 7.21 -39.44 -0.28 1.49 16 20 F -0.13 -2.04 16.36 2.25 0.04 -2.00 16 21 C -0.08 -1.50 6.29 -39.02 -0.25 -1.74 16 22 Cl -0.04 -0.75 25.66 -51.86 -1.33 -2.08 16 23 C -0.08 -1.84 9.40 -39.60 -0.37 -2.22 16 24 C -0.03 -0.84 7.26 -39.07 -0.28 -1.12 16 25 F -0.16 -3.99 16.70 2.25 0.04 -3.95 16 26 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 27 H 0.13 3.12 6.17 -52.49 -0.32 2.80 16 28 H 0.10 2.01 7.17 -52.49 -0.38 1.64 16 29 H 0.14 1.96 8.04 -52.49 -0.42 1.53 16 30 H 0.14 1.74 6.99 -52.48 -0.37 1.37 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.38 1.62 9.12 45.56 0.42 2.04 16 34 H 0.10 2.03 8.03 -52.49 -0.42 1.61 16 LS Contribution 319.24 15.07 4.81 4.81 Total: -1.00 -27.34 319.24 -8.25 -35.59 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.88 Total: 5.09 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -5.08 Total: -26.28 kcal Atomic # 7 Polarization: -18.55 SS G_CDS: 0.61 Total: -17.94 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.43 Total: -5.76 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.07 Total: -5.95 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.33 Total: -2.08 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.34 -8.25 -35.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245880993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.195 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds