Wall clock time and date at job start Tue Mar 31 2020 14:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 119.99910 * 2 1 4 4 H 1.48501 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47115 * 299.99355 * 3 2 1 6 6 H 1.48498 * 109.47378 * 59.99772 * 3 2 1 7 7 C 1.39995 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00651 * 197.87328 * 7 2 1 9 9 C 1.40947 * 120.00142 * 17.87711 * 7 2 1 10 10 C 1.40949 * 120.13076 * 24.79918 * 9 7 2 11 11 C 1.36195 * 119.89846 * 179.72155 * 10 9 7 12 12 C 1.40029 * 120.18442 * 0.23630 * 11 10 9 13 13 C 1.47974 * 119.86508 * 179.97438 * 12 11 10 14 14 C 1.39630 * 120.13704 * 129.99683 * 13 12 11 15 15 C 1.37908 * 119.91115 * 180.02562 * 14 13 12 16 16 C 1.38396 * 120.20351 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.86290 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.47212 * 359.97438 * 17 16 15 19 19 C 1.38531 * 120.28128 * 359.97438 * 16 15 14 20 20 F 1.35101 * 119.96280 * 180.02562 * 19 16 15 21 21 C 1.38324 * 120.07779 * 359.72544 * 19 16 15 22 22 Cl 1.73601 * 120.09999 * 180.27894 * 21 19 16 23 23 C 1.39795 * 120.27382 * 0.02562 * 12 11 10 24 24 C 1.36564 * 120.09911 * 359.97438 * 23 12 11 25 25 F 1.35097 * 120.09395 * 180.02562 * 24 23 12 26 26 H 0.96997 * 120.00230 * 0.02562 * 1 2 3 27 27 H 1.07994 * 120.05074 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.90678 * 180.25394 * 11 10 9 29 29 H 1.07993 * 120.04669 * 0.03035 * 14 13 12 30 30 H 1.08006 * 119.89701 * 180.02562 * 15 14 13 31 31 H 1.09000 * 109.47382 * 120.00068 * 17 16 15 32 32 H 1.09005 * 109.46899 * 239.99815 * 17 16 15 33 33 H 0.96700 * 113.99906 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.95335 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7021 1.3463 0.0006 5 1 1.8835 2.3964 -1.2126 6 1 1.8834 2.3965 1.2124 7 6 2.0081 -1.2124 0.0005 8 1 3.0491 -1.2350 0.2876 9 6 1.3545 -2.4038 -0.3736 10 6 0.2270 -2.3569 -1.2182 11 6 -0.3976 -3.5115 -1.5814 12 6 0.0743 -4.7443 -1.1141 13 6 -0.6101 -5.9942 -1.5126 14 6 0.1271 -7.0657 -2.0207 15 6 -0.5156 -8.2283 -2.3912 16 6 -1.8892 -8.3362 -2.2615 17 6 -2.5835 -9.6104 -2.6682 18 8 -1.6175 -10.5459 -3.1517 19 6 -2.6286 -7.2783 -1.7585 20 9 -3.9692 -7.3908 -1.6342 21 6 -1.9953 -6.1090 -1.3774 22 17 -2.9205 -4.7855 -0.7402 23 6 1.1885 -4.7990 -0.2716 24 6 1.8235 -3.6483 0.0997 25 9 2.9006 -3.7014 0.9134 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1380 -1.4075 -1.5808 28 1 -1.2589 -3.4761 -2.2318 29 1 1.1990 -6.9843 -2.1233 30 1 0.0549 -9.0572 -2.7837 31 1 -3.1002 -10.0336 -1.8068 32 1 -3.3060 -9.3951 -3.4556 33 1 -1.9945 -11.3910 -3.4323 34 1 1.5483 -5.7526 0.0854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245880993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:23 Heat of formation + Delta-G solvation = -125.889463 kcal Electronic energy + Delta-G solvation = -23836.433715 eV Core-core repulsion = 19780.691191 eV Total energy + Delta-G solvation = -4055.742523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.06043 -49.22507 -40.61320 -39.09332 -37.83466 -37.20252 -35.84942 -33.34637 -31.58358 -31.11413 -30.98970 -28.15321 -25.97572 -24.01785 -23.48666 -22.60845 -21.92001 -19.42561 -18.91971 -18.47441 -17.50170 -17.33133 -17.20010 -17.02247 -16.63082 -16.45077 -16.03421 -15.93536 -15.61174 -15.39951 -14.92349 -14.54758 -14.48348 -14.16931 -13.83338 -13.66886 -13.46300 -13.28476 -12.87771 -12.64331 -12.52140 -12.47589 -12.41189 -12.20614 -11.88686 -11.61996 -11.44776 -11.27254 -11.09883 -9.91849 -9.73040 -9.42554 -9.12313 -8.78872 -6.46132 -0.16902 -0.01130 0.79145 0.93728 1.08718 1.36327 1.45151 1.52349 2.15029 2.36788 2.61089 2.93547 3.24883 3.46990 3.61438 3.90105 4.01792 4.08496 4.17323 4.24656 4.33628 4.49388 4.50023 4.70583 4.86900 4.91749 4.99263 5.07963 5.19525 5.25393 5.29524 5.54273 5.61896 5.75178 5.96748 5.99951 6.08632 6.48708 6.66481 6.80765 6.92325 8.14386 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.003434 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.329330 B = 8151.563399 C = 9019.138633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.039 3.961 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.263 1.263 7 C -0.477 4.477 8 H 0.077 0.923 9 C 0.070 3.930 10 C -0.169 4.169 11 C -0.064 4.064 12 C -0.176 4.176 13 C 0.022 3.978 14 C -0.119 4.119 15 C -0.054 4.054 16 C -0.133 4.133 17 C 0.130 3.870 18 O -0.578 6.578 19 C 0.105 3.895 20 F -0.131 7.131 21 C -0.093 4.093 22 Cl -0.057 7.057 23 C -0.084 4.084 24 C -0.062 4.062 25 F -0.169 7.169 26 H 0.296 0.704 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.149 0.851 30 H 0.165 0.835 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.406 0.594 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -14.252 -6.388 16.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.187 1.187 7 C -0.505 4.505 8 H 0.095 0.905 9 C 0.067 3.933 10 C -0.189 4.189 11 C -0.083 4.083 12 C -0.178 4.178 13 C 0.021 3.979 14 C -0.137 4.137 15 C -0.072 4.072 16 C -0.134 4.134 17 C 0.053 3.947 18 O -0.388 6.388 19 C 0.085 3.915 20 F -0.109 7.109 21 C -0.121 4.121 22 Cl -0.028 7.028 23 C -0.103 4.103 24 C -0.082 4.082 25 F -0.148 7.148 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.127 0.873 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.258 0.742 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.420 -13.506 -6.137 15.794 hybrid contribution -0.342 0.774 0.464 0.966 sum -5.762 -12.732 -5.673 15.083 Atomic orbital electron populations 1.69834 1.09029 1.31465 1.32214 1.26828 0.95554 1.04662 0.90900 0.85081 0.79318 0.75530 0.79427 1.18305 1.18066 1.18739 1.19823 0.98524 0.92482 1.39644 0.90532 1.18032 0.92973 0.91673 0.90662 1.20748 0.99170 0.97663 1.01290 1.20641 0.97666 0.91626 0.98369 1.17779 1.00225 0.91340 1.08430 1.18604 0.89651 0.94112 0.95501 1.21579 1.01275 0.91899 0.98946 1.21060 0.92795 0.97529 0.95838 1.19940 0.94984 0.95260 1.03266 1.20639 0.89356 0.85749 0.98999 1.86353 1.36728 1.29611 1.86106 1.16990 0.77409 0.93682 1.03397 1.91487 1.29280 1.96291 1.93865 1.21192 0.92904 0.90472 1.07511 1.98376 1.72803 1.46445 1.85163 1.20407 0.95423 0.96144 0.98313 1.17627 0.92407 0.95430 1.02726 1.91249 1.54226 1.97341 1.72026 0.89257 0.86792 0.87320 0.83302 0.81713 0.90682 0.90640 0.74192 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.04 10.96 21.84 0.24 -39.80 16 2 C 0.04 1.89 5.13 85.27 0.44 2.32 16 3 Si 0.99 36.83 29.60 68.60 2.03 38.86 16 4 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 6 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 7 C -0.48 -25.56 8.76 23.36 0.20 -25.36 16 8 H 0.08 4.09 7.73 -2.91 -0.02 4.07 16 9 C 0.07 3.75 5.58 -21.23 -0.12 3.63 16 10 C -0.17 -8.58 8.63 22.46 0.19 -8.39 16 11 C -0.06 -2.90 8.10 22.23 0.18 -2.72 16 12 C -0.18 -7.37 5.13 -19.89 -0.10 -7.48 16 13 C 0.02 0.78 5.47 -20.02 -0.11 0.67 16 14 C -0.12 -3.37 9.50 22.53 0.21 -3.16 16 15 C -0.05 -1.30 9.36 22.23 0.21 -1.10 16 16 C -0.13 -3.21 5.89 -19.76 -0.12 -3.33 16 17 C 0.13 2.12 7.00 71.24 0.50 2.62 16 18 O -0.58 -8.04 12.12 -148.98 -1.81 -9.85 16 19 C 0.11 3.05 7.21 22.36 0.16 3.21 16 20 F -0.13 -3.66 16.36 44.97 0.74 -2.93 16 21 C -0.09 -3.18 6.29 22.63 0.14 -3.03 16 22 Cl -0.06 -2.08 25.66 -2.72 -0.07 -2.15 16 23 C -0.08 -3.69 9.40 22.26 0.21 -3.48 16 24 C -0.06 -3.14 7.26 22.60 0.16 -2.97 16 25 F -0.17 -8.58 16.70 44.97 0.75 -7.83 16 26 H 0.30 13.15 8.30 -92.71 -0.77 12.39 16 27 H 0.11 5.96 6.17 -2.91 -0.02 5.94 16 28 H 0.11 4.55 7.17 -2.91 -0.02 4.53 16 29 H 0.15 3.83 8.04 -2.91 -0.02 3.80 16 30 H 0.17 3.26 6.99 -2.91 -0.02 3.24 16 31 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 33 H 0.41 1.48 9.12 -74.06 -0.68 0.80 16 34 H 0.13 4.85 8.03 -2.91 -0.02 4.83 16 Total: -1.00 -61.07 319.24 4.56 -56.51 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.51 Total: 15.73 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 2.17 Total: -48.55 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.24 Total: -39.80 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.81 Total: -9.85 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 1.49 Total: -10.76 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -0.07 Total: -2.15 kcal Total: -61.07 4.56 -56.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245880993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.375 kcal (2) G-P(sol) polarization free energy of solvation -61.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds