Wall clock time and date at job start Tue Mar 31 2020 14:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31125 * 1 3 3 Br 1.89103 * 120.00011 * 2 1 4 4 C 1.50705 * 120.00116 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.46979 * 114.99606 * 4 2 1 6 6 C 1.34776 * 119.99826 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99956 * 180.02562 * 6 5 4 9 9 C 1.39960 * 119.99926 * 174.28905 * 8 6 5 10 10 C 1.39285 * 119.94519 * 145.41585 * 9 8 6 11 11 C 1.38491 * 120.43085 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.31567 * 0.30228 * 11 10 9 13 13 C 1.40737 * 119.88276 * 359.42939 * 12 11 10 14 14 C 1.41410 * 120.21242 * 180.31819 * 13 12 11 15 15 H 1.07993 * 120.00563 * 214.43186 * 14 13 12 16 16 C 1.39938 * 119.99695 * 34.41958 * 14 13 12 17 17 N 1.30827 * 120.00286 * 5.54785 * 16 14 13 18 18 Si 1.86796 * 119.99893 * 185.54183 * 16 14 13 19 19 H 1.48500 * 109.47474 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47042 * 120.00229 * 18 16 14 21 21 H 1.48499 * 109.47374 * 240.00240 * 18 16 14 22 22 C 1.38231 * 119.94880 * 325.39453 * 9 8 6 23 23 H 1.07999 * 119.99549 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47228 * 354.99807 * 4 2 1 26 26 H 1.09003 * 109.46679 * 234.99462 * 4 2 1 27 27 H 0.96996 * 119.99891 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00401 * 354.28049 * 8 6 5 29 29 H 1.07999 * 119.78873 * 0.02562 * 10 9 8 30 30 H 1.07995 * 119.84139 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.05639 * 179.70724 * 12 11 10 32 32 H 0.96990 * 120.00468 * 179.97438 * 17 16 14 33 33 H 1.08008 * 120.15871 * 359.97320 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0648 -1.3051 -0.0006 5 7 2.8144 -1.4356 -1.2525 6 6 3.5675 -2.5308 -1.4760 7 8 3.6251 -3.4102 -0.6383 8 7 4.2575 -2.6506 -2.6275 9 6 5.1321 -3.7279 -2.8103 10 6 5.2845 -4.2929 -4.0743 11 6 6.1476 -5.3588 -4.2667 12 6 6.8603 -5.8759 -3.2082 13 6 6.7207 -5.3115 -1.9265 14 6 7.4544 -5.8327 -0.8357 15 1 7.0184 -5.8442 0.1522 16 6 8.7454 -6.3340 -1.0366 17 7 9.3156 -6.2221 -2.2088 18 14 9.6547 -7.1626 0.3690 19 1 8.7976 -7.1624 1.5816 20 1 9.9783 -8.5622 -0.0076 21 1 10.9112 -6.4227 0.6503 22 6 5.8436 -4.2291 -1.7364 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.3600 -2.1317 0.0886 26 1 2.7570 -1.3253 0.8412 27 1 2.7693 -0.7335 -1.9202 28 1 4.1480 -1.9903 -3.3296 29 1 4.7267 -3.8968 -4.9099 30 1 6.2587 -5.7893 -5.2509 31 1 7.5285 -6.7102 -3.3621 32 1 10.2105 -6.5691 -2.3479 33 1 5.7266 -3.7911 -0.7560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365501802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:56 Heat of formation + Delta-G solvation = 14.946407 kcal Electronic energy + Delta-G solvation = -18449.077274 eV Core-core repulsion = 15328.394433 eV Total energy + Delta-G solvation = -3120.682841 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.95316 -37.51786 -36.16114 -34.32975 -33.33760 -32.76559 -30.23678 -29.74529 -28.28099 -26.12124 -25.19174 -21.71403 -20.82113 -20.38401 -19.71651 -17.96512 -17.58342 -16.24882 -15.69985 -15.37504 -14.85174 -14.57656 -14.41048 -14.31264 -13.60464 -13.12269 -12.83666 -12.66640 -12.16171 -11.75855 -11.69420 -11.60797 -11.11748 -11.09287 -10.89907 -10.48433 -10.39348 -10.20056 -9.67015 -9.54378 -9.42101 -9.20075 -8.96895 -8.93883 -7.31922 -6.84182 -6.55988 -4.29871 1.27384 1.34356 2.76081 2.91007 3.10730 3.15675 3.22059 3.24366 3.71591 4.05464 4.19660 4.57909 4.77307 5.07980 5.19480 5.45816 5.61767 5.72674 5.79662 6.25709 6.40484 6.45978 6.77902 6.81740 7.07656 7.14625 7.29511 7.38343 7.73828 7.83742 8.01303 8.18600 8.29433 8.44463 8.73693 8.94345 9.04329 9.06253 10.37942 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.002836 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.899538 B = 9870.423881 C =10537.291090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.143 4.143 3 Br -0.060 7.060 4 C 0.184 3.816 5 N -0.749 5.749 6 C 0.701 3.299 7 O -0.565 6.565 8 N -0.680 5.680 9 C 0.163 3.837 10 C -0.252 4.252 11 C -0.097 4.097 12 C -0.159 4.159 13 C 0.121 3.879 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.812 5.812 18 Si 0.911 3.089 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.200 4.200 23 H 0.126 0.874 24 H 0.116 0.884 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.394 0.606 28 H 0.394 0.606 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.118 0.882 32 H 0.277 0.723 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 15.302 1.740 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.223 4.223 3 Br 0.023 6.977 4 C 0.058 3.942 5 N -0.406 5.406 6 C 0.401 3.599 7 O -0.441 6.441 8 N -0.326 5.326 9 C 0.071 3.929 10 C -0.273 4.273 11 C -0.116 4.116 12 C -0.179 4.179 13 C 0.118 3.882 14 C -0.495 4.495 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.439 5.439 18 Si 0.736 3.264 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.221 4.221 23 H 0.144 0.856 24 H 0.134 0.866 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.228 0.772 28 H 0.228 0.772 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.504 15.022 2.454 21.025 hybrid contribution 0.180 0.107 -0.141 0.252 sum -14.324 15.129 2.313 20.962 Atomic orbital electron populations 1.24304 0.93832 1.04135 0.93576 1.24251 0.96458 0.92757 1.08802 1.96786 1.77029 1.26273 1.97601 1.20125 0.94869 0.91720 0.87449 1.45053 1.52369 1.22188 1.21015 1.15898 0.78716 0.82222 0.83057 1.90987 1.67198 1.40434 1.45447 1.42555 1.44843 1.28310 1.16921 1.17243 0.91563 0.89103 0.95001 1.20070 1.08760 1.03822 0.94689 1.20481 0.97211 0.96353 0.97542 1.21364 1.01733 1.01852 0.92962 1.17504 0.89029 0.88556 0.93105 1.19562 0.98753 1.35393 0.95794 0.90489 1.25835 0.97870 0.93908 0.96606 1.69784 1.14280 1.36845 1.22995 0.86219 0.79326 0.79152 0.81717 1.18545 1.19948 1.20114 1.21119 1.02888 1.00789 0.97319 0.85626 0.86568 0.89748 0.89925 0.77190 0.77215 0.89247 0.88950 0.86426 0.91270 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 14.00 28.98 0.41 -0.33 16 2 C -0.14 -1.22 5.77 -36.06 -0.21 -1.43 16 3 Br -0.06 -0.55 33.73 -68.01 -2.29 -2.84 16 4 C 0.18 2.07 5.96 -5.19 -0.03 2.04 16 5 N -0.75 -9.65 5.55 -66.41 -0.37 -10.02 16 6 C 0.70 12.75 8.28 -86.92 -0.72 12.03 16 7 O -0.57 -12.95 14.13 5.29 0.07 -12.88 16 8 N -0.68 -12.31 5.34 -14.27 -0.08 -12.38 16 9 C 0.16 3.74 6.25 -83.76 -0.52 3.22 16 10 C -0.25 -5.57 9.97 -39.10 -0.39 -5.96 16 11 C -0.10 -2.27 10.02 -39.69 -0.40 -2.67 16 12 C -0.16 -4.23 8.62 -38.84 -0.33 -4.57 16 13 C 0.12 3.38 5.50 -106.85 -0.59 2.79 16 14 C -0.46 -13.02 9.04 -37.74 -0.34 -13.37 16 15 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 16 C 0.07 1.91 5.31 -17.34 -0.09 1.82 16 17 N -0.81 -21.71 10.97 55.55 0.61 -21.11 16 18 Si 0.91 19.69 29.56 -169.99 -5.03 14.67 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C -0.20 -5.27 8.39 -38.69 -0.32 -5.59 16 23 H 0.13 0.63 7.84 -52.49 -0.41 0.22 16 24 H 0.12 0.58 8.05 -52.49 -0.42 0.15 16 25 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.39 4.07 8.48 -40.82 -0.35 3.73 16 28 H 0.39 5.52 8.84 -40.82 -0.36 5.16 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.12 3.21 6.48 -52.49 -0.34 2.87 16 32 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 33 H 0.11 2.94 6.51 -52.48 -0.34 2.60 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -31.80 312.11 -9.36 -41.16 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -3.44 Total: 10.71 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -3.54 Total: -12.01 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.16 Total: -43.51 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.07 Total: -12.88 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.67 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.80 -9.36 -41.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.105 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds