Wall clock time and date at job start Tue Mar 31 2020 14:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31125 * 1 3 3 Br 1.89103 * 120.00011 * 2 1 4 4 C 1.50705 * 120.00116 * 180.02562 * 2 1 3 5 5 N 1.46502 * 109.46979 * 114.99606 * 4 2 1 6 6 C 1.34776 * 119.99826 * 179.97438 * 5 4 2 7 7 O 1.21586 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99956 * 180.02562 * 6 5 4 9 9 C 1.39960 * 119.99926 * 174.28905 * 8 6 5 10 10 C 1.39285 * 119.94519 * 145.41585 * 9 8 6 11 11 C 1.38491 * 120.43085 * 179.97438 * 10 9 8 12 12 C 1.37689 * 120.31567 * 0.30228 * 11 10 9 13 13 C 1.40737 * 119.88276 * 359.42939 * 12 11 10 14 14 C 1.41410 * 120.21242 * 180.31819 * 13 12 11 15 15 H 1.07993 * 120.00563 * 214.43186 * 14 13 12 16 16 C 1.39938 * 119.99695 * 34.41958 * 14 13 12 17 17 N 1.30827 * 120.00286 * 5.54785 * 16 14 13 18 18 Si 1.86796 * 119.99893 * 185.54183 * 16 14 13 19 19 H 1.48500 * 109.47474 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47042 * 120.00229 * 18 16 14 21 21 H 1.48499 * 109.47374 * 240.00240 * 18 16 14 22 22 C 1.38231 * 119.94880 * 325.39453 * 9 8 6 23 23 H 1.07999 * 119.99549 * 179.97438 * 1 2 3 24 24 H 1.07997 * 120.00071 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47228 * 354.99807 * 4 2 1 26 26 H 1.09003 * 109.46679 * 234.99462 * 4 2 1 27 27 H 0.96996 * 119.99891 * 0.02562 * 5 4 2 28 28 H 0.97000 * 120.00401 * 354.28049 * 8 6 5 29 29 H 1.07999 * 119.78873 * 0.02562 * 10 9 8 30 30 H 1.07995 * 119.84139 * 180.02562 * 11 10 9 31 31 H 1.07997 * 120.05639 * 179.70724 * 12 11 10 32 32 H 0.96990 * 120.00468 * 179.97438 * 17 16 14 33 33 H 1.08008 * 120.15871 * 359.97320 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0648 -1.3051 -0.0006 5 7 2.8144 -1.4356 -1.2525 6 6 3.5675 -2.5308 -1.4760 7 8 3.6251 -3.4102 -0.6383 8 7 4.2575 -2.6506 -2.6275 9 6 5.1321 -3.7279 -2.8103 10 6 5.2845 -4.2929 -4.0743 11 6 6.1476 -5.3588 -4.2667 12 6 6.8603 -5.8759 -3.2082 13 6 6.7207 -5.3115 -1.9265 14 6 7.4544 -5.8327 -0.8357 15 1 7.0184 -5.8442 0.1522 16 6 8.7454 -6.3340 -1.0366 17 7 9.3156 -6.2221 -2.2088 18 14 9.6547 -7.1626 0.3690 19 1 8.7976 -7.1624 1.5816 20 1 9.9783 -8.5622 -0.0076 21 1 10.9112 -6.4227 0.6503 22 6 5.8436 -4.2291 -1.7364 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.3600 -2.1317 0.0886 26 1 2.7570 -1.3253 0.8412 27 1 2.7693 -0.7335 -1.9202 28 1 4.1480 -1.9903 -3.3296 29 1 4.7267 -3.8968 -4.9099 30 1 6.2587 -5.7893 -5.2509 31 1 7.5285 -6.7102 -3.3621 32 1 10.2105 -6.5691 -2.3479 33 1 5.7266 -3.7911 -0.7560 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365501802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:56 Heat of formation + Delta-G solvation = -6.013383 kcal Electronic energy + Delta-G solvation = -18449.986159 eV Core-core repulsion = 15328.394433 eV Total energy + Delta-G solvation = -3121.591726 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 324.021 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.45911 -39.23792 -37.24183 -36.09416 -34.88620 -34.10080 -31.70829 -30.94421 -29.93214 -27.35600 -27.04426 -23.37746 -22.70295 -21.73284 -20.77542 -19.58461 -19.09859 -17.66616 -17.12628 -16.85537 -16.46061 -16.16880 -15.87024 -15.58504 -14.85146 -14.67272 -14.59077 -13.97987 -13.70948 -13.49103 -12.96421 -12.86467 -12.82647 -12.52252 -12.32921 -12.16482 -12.00743 -11.50536 -11.23342 -11.17356 -11.08846 -10.76977 -10.25773 -10.12687 -9.29353 -8.69918 -8.49935 -6.38136 0.63685 0.70480 0.94282 1.03285 1.37317 1.47480 1.52664 1.79075 2.16982 2.24658 2.81068 3.30816 3.46260 3.72166 4.28086 4.48339 4.54414 4.63451 4.65402 5.04944 5.05406 5.10102 5.13158 5.15381 5.18219 5.33550 5.36705 5.71547 5.84801 6.05551 6.11926 6.17591 6.39637 6.71834 6.97688 7.01983 7.06026 7.56359 8.43766 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.020892 B = 0.002836 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.899538 B = 9870.423881 C =10537.291090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.165 4.165 3 Br -0.069 7.069 4 C 0.183 3.817 5 N -0.724 5.724 6 C 0.698 3.302 7 O -0.616 6.616 8 N -0.669 5.669 9 C 0.171 3.829 10 C -0.238 4.238 11 C -0.094 4.094 12 C -0.184 4.184 13 C 0.090 3.910 14 C -0.508 4.508 15 H 0.060 0.940 16 C 0.034 3.966 17 N -0.838 5.838 18 Si 0.983 3.017 19 H -0.267 1.267 20 H -0.260 1.260 21 H -0.264 1.264 22 C -0.226 4.226 23 H 0.143 0.857 24 H 0.136 0.864 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.411 0.589 28 H 0.418 0.582 29 H 0.135 0.865 30 H 0.126 0.874 31 H 0.101 0.899 32 H 0.286 0.714 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.620 16.453 0.576 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.244 4.244 3 Br 0.014 6.986 4 C 0.059 3.941 5 N -0.382 5.382 6 C 0.398 3.602 7 O -0.495 6.495 8 N -0.318 5.318 9 C 0.077 3.923 10 C -0.259 4.259 11 C -0.113 4.113 12 C -0.204 4.204 13 C 0.087 3.913 14 C -0.539 4.539 15 H 0.078 0.922 16 C -0.178 4.178 17 N -0.466 5.466 18 Si 0.804 3.196 19 H -0.191 1.191 20 H -0.184 1.184 21 H -0.189 1.189 22 C -0.248 4.248 23 H 0.160 0.840 24 H 0.154 0.846 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.247 0.753 28 H 0.256 0.744 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.119 0.881 32 H 0.096 0.904 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.044 16.255 1.247 22.873 hybrid contribution 0.445 -0.132 0.149 0.488 sum -15.599 16.123 1.396 22.477 Atomic orbital electron populations 1.24639 0.92865 1.05838 0.89007 1.23910 0.96781 0.91020 1.12737 1.96782 1.77594 1.26446 1.97805 1.20171 0.94514 0.93712 0.85752 1.44880 1.50731 1.20653 1.21917 1.16102 0.78938 0.82807 0.82328 1.90966 1.68905 1.42695 1.46982 1.42313 1.43857 1.27744 1.17867 1.17295 0.90943 0.89629 0.94432 1.20513 1.07584 1.02420 0.95397 1.20863 0.96064 0.96269 0.98072 1.21310 1.03149 1.02397 0.93580 1.17814 0.89959 0.89499 0.93993 1.19709 1.00467 1.38361 0.95405 0.92180 1.26632 0.97889 0.93869 0.99438 1.69828 1.14942 1.37211 1.24619 0.85148 0.77892 0.78594 0.77934 1.19060 1.18404 1.18856 1.21054 1.04552 1.01603 0.97558 0.83975 0.84635 0.89428 0.91967 0.75288 0.74446 0.84714 0.85609 0.88059 0.90383 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 14.00 67.66 0.95 0.18 16 2 C -0.17 -2.49 5.77 25.52 0.15 -2.34 16 3 Br -0.07 -1.17 33.73 -20.37 -0.69 -1.85 16 4 C 0.18 3.99 5.96 85.63 0.51 4.50 16 5 N -0.72 -17.79 5.55 -482.29 -2.68 -20.47 16 6 C 0.70 25.17 8.28 179.06 1.48 26.65 16 7 O -0.62 -29.10 14.13 -3.99 -0.06 -29.16 16 8 N -0.67 -23.27 5.34 -317.33 -1.70 -24.97 16 9 C 0.17 7.74 6.25 38.09 0.24 7.98 16 10 C -0.24 -9.90 9.97 22.58 0.23 -9.68 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 12 C -0.18 -10.03 8.62 22.75 0.20 -9.83 16 13 C 0.09 5.26 5.50 -21.31 -0.12 5.15 16 14 C -0.51 -30.24 9.04 23.46 0.21 -30.03 16 15 H 0.06 3.61 7.85 -2.91 -0.02 3.58 16 16 C 0.03 1.85 5.31 85.25 0.45 2.30 16 17 N -0.84 -46.01 10.97 21.82 0.24 -45.77 16 18 Si 0.98 41.45 29.56 68.60 2.03 43.48 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 22 C -0.23 -12.41 8.39 22.85 0.19 -12.22 16 23 H 0.14 0.89 7.84 -2.91 -0.02 0.87 16 24 H 0.14 0.80 8.05 -2.91 -0.02 0.78 16 25 H 0.09 1.86 7.79 -2.39 -0.02 1.84 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.41 7.56 8.48 -92.71 -0.79 6.77 16 28 H 0.42 10.45 8.84 -92.71 -0.82 9.63 16 29 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 31 H 0.10 5.74 6.48 -2.91 -0.02 5.72 16 32 H 0.29 14.11 8.30 -92.72 -0.77 13.34 16 33 H 0.08 4.88 6.51 -2.91 -0.02 4.86 16 Total: -1.00 -73.35 312.11 1.41 -71.94 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.45 Total: 28.20 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.71 Total: -21.40 kcal Atomic # 7 Polarization: -87.07 SS G_CDS: -4.13 Total: -91.21 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.06 Total: -29.16 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 35 Polarization: -1.17 SS G_CDS: -0.69 Total: -1.85 kcal Total: -73.35 1.41 -71.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds