Wall clock time and date at job start Tue Mar 31 2020 13:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86794 * 119.99654 * 2 1 4 4 H 1.48501 * 109.47192 * 270.00189 * 3 2 1 5 5 H 1.48497 * 109.47368 * 30.00166 * 3 2 1 6 6 H 1.48505 * 109.46886 * 150.00339 * 3 2 1 7 7 C 1.39091 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99785 * 185.28286 * 7 2 1 9 9 N 1.36766 * 120.00081 * 5.28064 * 7 2 1 10 10 C 1.46501 * 119.99891 * 33.91903 * 9 7 2 11 11 C 1.50701 * 109.47264 * 263.04049 * 10 9 7 12 12 O 1.20826 * 119.99798 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00520 * 180.02562 * 11 10 9 14 14 C 1.34774 * 120.00272 * 213.91601 * 9 7 2 15 15 O 1.21677 * 120.00411 * 185.19750 * 14 9 7 16 16 C 1.47077 * 119.99583 * 5.20040 * 14 9 7 17 17 N 1.30638 * 125.54781 * 355.32560 * 16 14 9 18 18 C 1.30724 * 115.88573 * 180.02562 * 17 16 14 19 19 C 1.34234 * 115.78441 * 0.02562 * 18 17 16 20 20 C 1.50701 * 125.44198 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47066 * 89.99943 * 20 19 18 22 22 F 1.39891 * 109.47213 * 329.99988 * 20 19 18 23 23 F 1.39899 * 109.46943 * 209.99351 * 20 19 18 24 24 S 1.71064 * 109.11081 * 0.23806 * 19 18 17 25 25 H 0.96992 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47349 * 23.03809 * 10 9 7 27 27 H 1.09006 * 109.47415 * 143.04070 * 10 9 7 28 28 H 0.96699 * 117.00373 * 179.97438 * 13 11 10 29 29 H 1.07999 * 122.10726 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4448 2.6526 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0089 -1.2046 -0.0005 8 1 3.0854 -1.2065 0.0856 9 7 1.3295 -2.3864 -0.1101 10 6 0.1121 -2.4590 -0.9219 11 6 -1.0949 -2.3108 -0.0318 12 8 -0.9528 -2.1605 1.1586 13 8 -2.3278 -2.3467 -0.5613 14 6 1.7798 -3.4844 0.5288 15 8 1.2310 -4.5566 0.3565 16 6 2.9346 -3.3865 1.4343 17 7 3.6557 -2.3153 1.6324 18 6 4.6422 -2.4403 2.4810 19 6 4.7841 -3.6539 3.0367 20 6 5.8430 -4.0383 4.0377 21 9 5.3694 -3.8000 5.3324 22 9 6.9944 -3.2757 3.8147 23 9 6.1482 -5.3962 3.8955 24 16 3.5754 -4.6964 2.4215 25 1 -0.4850 0.8399 0.0004 26 1 0.1196 -1.6573 -1.6604 27 1 0.0719 -3.4219 -1.4313 28 1 -3.0709 -2.2477 0.0494 29 1 5.3019 -1.6191 2.7193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071350.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:29 Heat of formation + Delta-G solvation = -201.759386 kcal Electronic energy + Delta-G solvation = -25322.399912 eV Core-core repulsion = 20731.101560 eV Total energy + Delta-G solvation = -4591.298352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.022 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.09304 -47.63084 -47.56873 -39.83605 -39.08647 -37.93890 -35.38985 -34.69370 -32.01034 -31.40513 -28.52041 -26.59835 -25.07575 -24.02154 -21.84552 -20.70651 -19.57816 -19.07898 -18.45491 -18.37173 -17.19296 -16.87557 -16.71994 -15.84782 -15.55680 -14.76391 -14.61135 -14.56792 -14.44058 -14.32242 -14.29292 -14.08026 -14.01682 -13.74571 -13.74320 -13.11522 -12.97609 -12.26339 -11.99894 -11.83690 -11.64414 -11.36890 -11.23995 -10.98734 -10.57745 -10.36637 -9.78828 -9.43317 -9.41379 -9.31559 -8.87731 -8.61089 -8.11504 -6.86101 -4.28597 0.38995 1.38247 1.94292 2.70075 2.76479 3.02378 3.06650 3.12565 3.53445 3.64043 3.82419 3.90615 4.15267 4.24463 4.36653 4.43713 4.70452 4.91994 5.48819 5.65581 6.02507 6.23403 6.32059 6.43160 7.15596 7.27299 7.51176 7.93582 8.07808 8.62161 8.90507 9.06499 9.36627 10.18634 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.004786 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.932820 B = 5848.426406 C = 7030.487937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.287 4.287 8 H 0.139 0.861 9 N -0.377 5.377 10 C 0.151 3.849 11 C 0.499 3.501 12 O -0.500 6.500 13 O -0.535 6.535 14 C 0.508 3.492 15 O -0.598 6.598 16 C 0.073 3.927 17 N -0.426 5.426 18 C 0.116 3.884 19 C -0.421 4.421 20 C 0.558 3.442 21 F -0.174 7.174 22 F -0.173 7.173 23 F -0.177 7.177 24 S 0.236 5.764 25 H 0.281 0.719 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.394 0.606 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -2.474 1.487 6.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.172 4.172 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.419 4.419 8 H 0.156 0.844 9 N -0.093 5.093 10 C 0.026 3.974 11 C 0.340 3.660 12 O -0.384 6.384 13 O -0.346 6.346 14 C 0.297 3.703 15 O -0.486 6.486 16 C -0.198 4.198 17 N -0.142 5.142 18 C -0.047 4.047 19 C -0.546 4.546 20 C 0.502 3.498 21 F -0.156 7.156 22 F -0.154 7.154 23 F -0.158 7.158 24 S 0.496 5.504 25 H 0.092 0.908 26 H 0.140 0.860 27 H 0.112 0.888 28 H 0.250 0.750 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 4.979 -3.549 1.344 6.260 hybrid contribution 0.520 1.957 1.088 2.299 sum 5.499 -1.591 2.432 6.220 Atomic orbital electron populations 1.69608 1.06728 1.29264 1.42334 1.25753 0.95481 1.01154 0.94796 0.85661 0.79789 0.79185 0.78758 1.19793 1.20617 1.18323 1.20821 0.94276 0.81305 1.45514 0.84380 1.43365 1.19954 1.09329 1.36620 1.20565 0.81033 1.03633 0.92212 1.23212 0.83240 0.71161 0.88432 1.90590 1.85880 1.44290 1.17677 1.84483 1.17192 1.86512 1.46440 1.16688 0.84740 0.85712 0.83159 1.90731 1.61855 1.28159 1.67846 1.27976 0.99792 0.90501 1.01578 1.67607 1.04650 1.25788 1.16124 1.21858 0.95870 0.95251 0.91729 1.25443 1.10122 1.04226 1.14772 1.16888 0.79589 0.74270 0.79083 1.93226 1.88303 1.94137 1.39908 1.93186 1.51751 1.75838 1.94621 1.93201 1.93752 1.33127 1.95720 1.83810 1.18443 1.12407 1.35722 0.90811 0.86029 0.88833 0.74972 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.11 8.70 55.50 0.48 -19.63 15 2 C 0.04 0.87 5.16 -17.44 -0.09 0.78 15 3 Si 0.94 18.23 29.56 -169.99 -5.02 13.21 15 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 15 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 7 C -0.29 -6.74 8.14 -15.03 -0.12 -6.86 15 8 H 0.14 3.18 5.62 -52.49 -0.30 2.89 15 9 N -0.38 -8.97 2.15 -117.45 -0.25 -9.22 15 10 C 0.15 3.27 5.17 -5.19 -0.03 3.24 15 11 C 0.50 11.23 6.36 36.01 0.23 11.46 15 12 O -0.50 -13.09 16.04 -18.75 -0.30 -13.39 15 13 O -0.53 -9.75 13.42 -39.24 -0.53 -10.28 15 14 C 0.51 12.21 7.35 -12.68 -0.09 12.12 15 15 O -0.60 -15.08 16.61 5.21 0.09 -14.99 15 16 C 0.07 1.57 7.23 -14.48 -0.10 1.47 15 17 N -0.43 -8.79 7.21 -11.54 -0.08 -8.87 15 18 C 0.12 2.00 10.79 -19.43 -0.21 1.79 15 19 C -0.42 -6.96 5.82 -35.72 -0.21 -7.17 15 20 C 0.56 8.16 3.52 36.01 0.13 8.28 15 21 F -0.17 -2.57 17.30 2.25 0.04 -2.53 15 22 F -0.17 -2.38 16.95 2.25 0.04 -2.34 15 23 F -0.18 -2.53 17.02 2.25 0.04 -2.49 15 24 S 0.24 4.23 22.69 -107.50 -2.44 1.79 15 25 H 0.28 6.40 8.31 -40.82 -0.34 6.07 15 26 H 0.12 2.52 7.10 -51.93 -0.37 2.15 15 27 H 0.09 1.86 7.57 -51.93 -0.39 1.47 15 28 H 0.39 5.52 9.10 45.56 0.41 5.93 15 29 H 0.17 2.49 8.00 -52.49 -0.42 2.07 15 LS Contribution 294.20 15.07 4.43 4.43 Total: -1.00 -28.89 294.20 -4.20 -33.10 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -0.20 Total: 6.12 kcal Atomic # 6 Polarization: 25.60 SS G_CDS: -0.50 Total: 25.11 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 0.15 Total: -37.72 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.74 Total: -38.66 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 0.12 Total: -7.37 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.21 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.44 Total: 1.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.89 -4.20 -33.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071350.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.662 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds