Wall clock time and date at job start Tue Mar 31 2020 13:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31345 * 1 3 3 Si 1.86794 * 119.99654 * 2 1 4 4 H 1.48501 * 109.47192 * 270.00189 * 3 2 1 5 5 H 1.48497 * 109.47368 * 30.00166 * 3 2 1 6 6 H 1.48505 * 109.46886 * 150.00339 * 3 2 1 7 7 C 1.39091 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99785 * 185.28286 * 7 2 1 9 9 N 1.36766 * 120.00081 * 5.28064 * 7 2 1 10 10 C 1.46501 * 119.99891 * 33.91903 * 9 7 2 11 11 C 1.50701 * 109.47264 * 263.04049 * 10 9 7 12 12 O 1.20826 * 119.99798 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00520 * 180.02562 * 11 10 9 14 14 C 1.34774 * 120.00272 * 213.91601 * 9 7 2 15 15 O 1.21677 * 120.00411 * 185.19750 * 14 9 7 16 16 C 1.47077 * 119.99583 * 5.20040 * 14 9 7 17 17 N 1.30638 * 125.54781 * 355.32560 * 16 14 9 18 18 C 1.30724 * 115.88573 * 180.02562 * 17 16 14 19 19 C 1.34234 * 115.78441 * 0.02562 * 18 17 16 20 20 C 1.50701 * 125.44198 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.47066 * 89.99943 * 20 19 18 22 22 F 1.39891 * 109.47213 * 329.99988 * 20 19 18 23 23 F 1.39899 * 109.46943 * 209.99351 * 20 19 18 24 24 S 1.71064 * 109.11081 * 0.23806 * 19 18 17 25 25 H 0.96992 * 120.00515 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47349 * 23.03809 * 10 9 7 27 27 H 1.09006 * 109.47415 * 143.04070 * 10 9 7 28 28 H 0.96699 * 117.00373 * 179.97438 * 13 11 10 29 29 H 1.07999 * 122.10726 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4948 2.0465 -1.4001 5 1 1.4448 2.6526 0.7000 6 1 3.5450 1.4402 0.7000 7 6 2.0089 -1.2046 -0.0005 8 1 3.0854 -1.2065 0.0856 9 7 1.3295 -2.3864 -0.1101 10 6 0.1121 -2.4590 -0.9219 11 6 -1.0949 -2.3108 -0.0318 12 8 -0.9528 -2.1605 1.1586 13 8 -2.3278 -2.3467 -0.5613 14 6 1.7798 -3.4844 0.5288 15 8 1.2310 -4.5566 0.3565 16 6 2.9346 -3.3865 1.4343 17 7 3.6557 -2.3153 1.6324 18 6 4.6422 -2.4403 2.4810 19 6 4.7841 -3.6539 3.0367 20 6 5.8430 -4.0383 4.0377 21 9 5.3694 -3.8000 5.3324 22 9 6.9944 -3.2757 3.8147 23 9 6.1482 -5.3962 3.8955 24 16 3.5754 -4.6964 2.4215 25 1 -0.4850 0.8399 0.0004 26 1 0.1196 -1.6573 -1.6604 27 1 0.0719 -3.4219 -1.4313 28 1 -3.0709 -2.2477 0.0494 29 1 5.3019 -1.6191 2.7193 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071350.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:29 Heat of formation + Delta-G solvation = -220.258240 kcal Electronic energy + Delta-G solvation = -25323.202082 eV Core-core repulsion = 20731.101560 eV Total energy + Delta-G solvation = -4592.100523 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.022 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.28209 -48.80351 -48.75601 -41.50451 -40.70987 -39.64561 -37.10649 -36.42532 -33.70661 -32.88572 -30.15874 -28.16820 -26.71408 -25.44223 -23.45406 -22.28630 -21.16073 -20.53053 -19.71263 -19.64301 -18.87662 -18.44548 -18.21908 -17.53549 -17.17607 -16.43971 -16.19844 -16.09089 -16.03905 -15.71638 -15.55037 -15.47758 -15.19380 -14.92337 -14.91302 -14.76991 -14.62834 -13.71652 -13.58504 -13.46629 -13.26289 -12.94200 -12.75158 -12.56584 -12.12885 -12.07515 -11.51722 -11.19212 -11.07721 -10.91703 -10.50255 -10.13086 -9.82159 -8.52292 -6.06771 -1.11378 -0.13178 0.43944 1.15853 1.47894 1.49857 1.52933 1.62247 1.80478 2.03278 2.27564 2.46914 2.56996 2.75969 3.02420 3.04064 3.22129 3.37323 4.03667 4.12216 4.40471 4.58546 4.80665 4.86313 5.47012 5.57237 5.96302 6.34174 6.43111 6.92827 7.17651 7.42081 7.62661 8.53028 Molecular weight = 324.02amu Principal moments of inertia in cm(-1) A = 0.016381 B = 0.004786 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.932820 B = 5848.426406 C = 7030.487937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.003 3.997 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.258 1.258 7 C -0.314 4.314 8 H 0.138 0.862 9 N -0.389 5.389 10 C 0.147 3.853 11 C 0.504 3.496 12 O -0.543 6.543 13 O -0.521 6.521 14 C 0.498 3.502 15 O -0.621 6.621 16 C 0.035 3.965 17 N -0.434 5.434 18 C 0.104 3.896 19 C -0.402 4.402 20 C 0.568 3.432 21 F -0.171 7.171 22 F -0.162 7.162 23 F -0.172 7.172 24 S 0.287 5.713 25 H 0.278 0.722 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.414 0.586 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.161 -2.651 2.336 7.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.445 4.445 8 H 0.155 0.845 9 N -0.104 5.104 10 C 0.022 3.978 11 C 0.346 3.654 12 O -0.432 6.432 13 O -0.334 6.334 14 C 0.288 3.712 15 O -0.510 6.510 16 C -0.236 4.236 17 N -0.151 5.151 18 C -0.058 4.058 19 C -0.527 4.527 20 C 0.511 3.489 21 F -0.152 7.152 22 F -0.143 7.143 23 F -0.153 7.153 24 S 0.546 5.454 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.123 0.877 28 H 0.273 0.727 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.654 -3.708 2.160 7.917 hybrid contribution 0.127 1.768 0.975 2.023 sum 6.781 -1.940 3.135 7.719 Atomic orbital electron populations 1.69683 1.07665 1.29348 1.44431 1.26439 0.96070 1.03446 0.94256 0.84821 0.78415 0.75638 0.79026 1.18647 1.21479 1.18140 1.20869 0.94348 0.81517 1.47745 0.84489 1.43471 1.20480 1.09384 1.37080 1.20666 0.80673 1.04296 0.92154 1.23331 0.84313 0.69939 0.87798 1.90560 1.86692 1.46527 1.19375 1.84420 1.16729 1.85710 1.46502 1.17091 0.85402 0.85513 0.83226 1.90680 1.62814 1.28850 1.68683 1.27774 1.00447 0.92480 1.02929 1.67570 1.04956 1.26009 1.16529 1.22267 0.95565 0.96536 0.91417 1.25828 1.09514 1.03693 1.13640 1.16581 0.79244 0.74539 0.78538 1.93244 1.88335 1.94145 1.39503 1.93218 1.50986 1.75605 1.94539 1.93224 1.93648 1.32738 1.95671 1.83675 1.17446 1.10782 1.33458 0.91189 0.85608 0.87702 0.72667 0.77730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.55 8.70 21.69 0.19 -42.36 15 2 C 0.00 0.16 5.16 84.97 0.44 0.60 15 3 Si 1.00 37.45 29.56 68.60 2.03 39.48 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 15 5 H -0.29 -11.08 7.11 99.48 0.71 -10.37 15 6 H -0.26 -9.43 7.11 99.48 0.71 -8.73 15 7 C -0.31 -14.99 8.14 84.13 0.68 -14.30 15 8 H 0.14 6.38 5.62 -2.91 -0.02 6.36 15 9 N -0.39 -18.86 2.15 -643.73 -1.38 -20.25 15 10 C 0.15 6.51 5.17 85.63 0.44 6.95 15 11 C 0.50 23.02 6.36 71.24 0.45 23.47 15 12 O -0.54 -29.10 16.04 21.97 0.35 -28.75 15 13 O -0.52 -18.83 13.42 -51.35 -0.69 -19.52 15 14 C 0.50 24.27 7.35 86.56 0.64 24.91 15 15 O -0.62 -31.68 16.61 -4.27 -0.07 -31.75 15 16 C 0.03 1.49 7.23 87.19 0.63 2.12 15 17 N -0.43 -17.45 7.21 -190.41 -1.37 -18.82 15 18 C 0.10 3.32 10.79 83.94 0.91 4.22 15 19 C -0.40 -12.08 5.82 24.77 0.14 -11.93 15 20 C 0.57 14.54 3.52 71.24 0.25 14.79 15 21 F -0.17 -4.44 17.30 44.97 0.78 -3.67 15 22 F -0.16 -3.85 16.95 44.97 0.76 -3.09 15 23 F -0.17 -4.30 17.02 44.97 0.77 -3.54 15 24 S 0.29 9.69 22.69 -56.49 -1.28 8.41 15 25 H 0.28 12.96 8.31 -92.71 -0.77 12.19 15 26 H 0.13 5.35 7.10 -2.39 -0.02 5.34 15 27 H 0.11 4.26 7.57 -2.38 -0.02 4.24 15 28 H 0.41 11.31 9.10 -74.06 -0.67 10.63 15 29 H 0.21 5.16 8.00 -2.91 -0.02 5.13 15 Total: -1.00 -62.00 294.20 5.26 -56.74 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.60 Total: 16.27 kcal Atomic # 6 Polarization: 46.25 SS G_CDS: 4.59 Total: 50.83 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -2.57 Total: -81.43 kcal Atomic # 8 Polarization: -79.60 SS G_CDS: -0.41 Total: -80.01 kcal Atomic # 9 Polarization: -12.60 SS G_CDS: 2.31 Total: -10.29 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: 9.69 SS G_CDS: -1.28 Total: 8.41 kcal Total: -62.00 5.26 -56.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071350.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.519 kcal (2) G-P(sol) polarization free energy of solvation -62.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds