Wall clock time and date at job start Tue Mar 31 2020 14:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47284 * 2 1 4 4 C 1.50703 * 109.47029 * 240.00404 * 2 1 3 5 5 H 1.08003 * 119.99935 * 239.99856 * 4 2 1 6 6 C 1.37880 * 120.00001 * 59.99485 * 4 2 1 7 7 N 1.31514 * 120.00110 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47020 * 120.00262 * 8 6 4 11 11 H 1.48508 * 109.47198 * 240.00390 * 8 6 4 12 12 N 1.46494 * 109.47228 * 120.00417 * 2 1 3 13 13 C 1.34784 * 119.99862 * 274.99523 * 12 2 1 14 14 O 1.21577 * 119.99952 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99623 * 180.02562 * 13 12 2 16 16 C 1.39087 * 119.99507 * 180.02562 * 15 13 12 17 17 N 1.30144 * 126.08149 * 0.04110 * 16 15 13 18 18 N 1.26096 * 117.75133 * 179.67274 * 17 16 15 19 19 C 1.30343 * 117.67963 * 0.55344 * 18 17 16 20 20 C 1.47834 * 126.10861 * 179.75704 * 19 18 17 21 21 C 1.39540 * 122.81074 * 359.69672 * 20 19 18 22 22 C 1.32979 * 114.91794 * 180.29490 * 21 20 19 23 23 S 1.75800 * 109.99492 * 359.59033 * 22 21 20 24 24 C 1.34803 * 122.81766 * 179.71425 * 20 19 18 25 25 S 1.76468 * 126.07821 * 179.97438 * 16 15 13 26 26 H 1.09001 * 109.47083 * 59.99449 * 1 2 3 27 27 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47193 * 299.99597 * 1 2 3 29 29 H 0.96995 * 119.99771 * 179.97438 * 7 6 4 30 30 H 0.96999 * 120.00144 * 95.00214 * 12 2 1 31 31 H 0.96999 * 120.00389 * 359.97438 * 15 13 12 32 32 H 1.08002 * 122.53710 * 0.02562 * 21 20 19 33 33 H 1.08001 * 124.99972 * 179.72520 * 22 21 20 34 34 H 1.08001 * 125.23453 * 359.95767 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1453 -2.2875 -3.6040 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1871 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1612 2.4118 15 7 2.5969 -0.6537 3.4574 16 6 2.7293 0.0401 4.6556 17 7 2.4541 1.2975 4.8477 18 7 2.6274 1.7662 6.0054 19 6 3.0803 0.9596 6.9237 20 6 3.3554 1.3108 8.3331 21 6 3.1567 2.5935 8.8454 22 6 3.4605 2.7362 10.1321 23 16 4.0215 1.2057 10.7906 24 6 3.8196 0.4190 9.2310 25 16 3.2988 -0.6287 6.1861 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1619 -3.4844 30 1 2.2490 -1.6318 1.1524 31 1 2.8276 -1.5948 3.4138 32 1 2.7884 3.4096 8.2414 33 1 3.3732 3.6563 10.6909 34 1 4.0341 -0.6192 9.0245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157887035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:02 Heat of formation + Delta-G solvation = 83.068745 kcal Electronic energy + Delta-G solvation = -21141.483692 eV Core-core repulsion = 17715.271872 eV Total energy + Delta-G solvation = -3426.211821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.046 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.09144 -39.58793 -38.19061 -35.52783 -34.47890 -32.52602 -31.28178 -29.65263 -28.73266 -26.25210 -25.30067 -23.96827 -22.78665 -20.92135 -20.22713 -19.51900 -19.06492 -18.31107 -17.69402 -16.69082 -16.12791 -15.98343 -15.57192 -15.05295 -14.61726 -14.22519 -13.73441 -13.51773 -13.43378 -13.31703 -13.21106 -12.77574 -12.48050 -11.96195 -11.45920 -11.34170 -11.13357 -10.97884 -10.77045 -10.64240 -10.35806 -10.29046 -10.17096 -10.02570 -9.48925 -9.27975 -9.11222 -9.04284 -8.62853 -8.28806 -7.97895 -6.17514 -4.27396 -0.00169 0.38382 0.85845 1.04069 1.21465 1.52975 2.21518 2.68375 2.94979 3.20892 3.28835 3.31042 3.71065 4.06548 4.26835 4.49006 4.56617 4.78465 5.01979 5.12956 5.15504 5.26743 5.69761 5.86502 5.99928 6.12310 6.57076 6.85765 6.90881 7.09408 7.32411 7.53955 7.68110 7.86712 8.08496 8.52966 8.68891 8.78113 9.04411 9.40045 10.88568 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.045911 B = 0.002163 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.731410 B =12939.782712 C =13272.084250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.280 3.720 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.881 5.881 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.711 5.711 13 C 0.683 3.317 14 O -0.530 6.530 15 N -0.636 5.636 16 C 0.298 3.702 17 N -0.259 5.259 18 N -0.217 5.217 19 C 0.054 3.946 20 C -0.019 4.019 21 C -0.102 4.102 22 C -0.212 4.212 23 S 0.130 5.870 24 C -0.199 4.199 25 S 0.056 5.944 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.418 0.582 32 H 0.155 0.845 33 H 0.172 0.828 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.471 -4.952 25.342 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.179 3.821 3 H 0.070 0.930 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.518 5.518 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.363 5.363 13 C 0.380 3.620 14 O -0.401 6.401 15 N -0.291 5.291 16 C -0.073 4.073 17 N -0.104 5.104 18 N -0.054 5.054 19 C -0.228 4.228 20 C -0.037 4.037 21 C -0.133 4.133 22 C -0.347 4.347 23 S 0.393 5.607 24 C -0.339 4.339 25 S 0.295 5.705 26 H 0.111 0.889 27 H 0.046 0.954 28 H 0.036 0.964 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.255 0.745 32 H 0.172 0.828 33 H 0.189 0.811 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.432 -3.946 26.276 27.338 hybrid contribution 0.047 -1.088 -2.376 2.614 sum 6.479 -5.034 23.900 25.269 Atomic orbital electron populations 1.22118 0.98278 0.99230 1.01182 1.18796 0.91033 0.93874 0.78417 0.92995 1.21203 1.32710 1.13385 0.90068 0.91919 1.24891 0.94780 0.94968 0.99088 1.69911 1.35644 1.22288 1.23954 0.86353 0.78586 0.79455 0.82437 1.19759 1.20839 1.20824 1.45913 1.68387 1.13432 1.08616 1.16269 0.79739 0.85879 0.80065 1.91059 1.53257 1.13152 1.82592 1.42553 1.67417 1.13498 1.05590 1.26732 0.98240 0.91629 0.90742 1.71690 1.21178 1.06643 1.10839 1.71441 1.11118 1.28403 0.94429 1.26894 1.07141 0.90428 0.98308 1.16629 1.04353 0.94202 0.88492 1.20140 1.01332 0.96938 0.94877 1.25509 1.08686 1.01892 0.98650 1.84241 1.64395 1.01960 1.10107 1.25827 1.07883 1.03559 0.96658 1.85457 1.66452 1.14025 1.04532 0.88901 0.95387 0.96433 0.92483 0.77990 0.74498 0.82779 0.81101 0.81375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 2 C 0.28 7.00 2.56 -69.09 -0.18 6.82 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 4 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.71 -14.23 5.07 -59.81 -0.30 -14.53 16 13 C 0.68 13.82 8.49 -86.91 -0.74 13.08 16 14 O -0.53 -13.35 14.71 5.30 0.08 -13.27 16 15 N -0.64 -9.58 5.41 -16.00 -0.09 -9.67 16 16 C 0.30 4.73 8.42 -86.84 -0.73 4.00 16 17 N -0.26 -5.02 9.78 31.05 0.30 -4.72 16 18 N -0.22 -3.70 11.48 33.02 0.38 -3.32 16 19 C 0.05 0.72 7.51 -14.26 -0.11 0.62 16 20 C -0.02 -0.20 5.79 -106.70 -0.62 -0.82 16 21 C -0.10 -0.99 9.92 -40.92 -0.41 -1.40 16 22 C -0.21 -1.55 11.18 28.91 0.32 -1.23 16 23 S 0.13 0.86 23.32 -107.50 -2.51 -1.65 16 24 C -0.20 -1.64 10.79 29.51 0.32 -1.32 16 25 S 0.06 0.62 23.03 -107.50 -2.48 -1.85 16 26 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.33 8.55 -40.82 -0.35 5.98 16 31 H 0.42 4.28 8.84 -40.82 -0.36 3.92 16 32 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.17 1.07 7.88 -52.49 -0.41 0.66 16 LS Contribution 330.31 15.07 4.98 4.98 Total: -1.00 -33.52 330.31 -9.28 -42.79 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.06 Total: 5.91 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.19 Total: 3.99 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.92 Total: -56.15 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -4.98 Total: -3.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.52 -9.28 -42.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157887035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.863 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds