Wall clock time and date at job start Tue Mar 31 2020 14:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47284 * 2 1 4 4 C 1.50703 * 109.47029 * 240.00404 * 2 1 3 5 5 H 1.08003 * 119.99935 * 239.99856 * 4 2 1 6 6 C 1.37880 * 120.00001 * 59.99485 * 4 2 1 7 7 N 1.31514 * 120.00110 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99902 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47282 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47020 * 120.00262 * 8 6 4 11 11 H 1.48508 * 109.47198 * 240.00390 * 8 6 4 12 12 N 1.46494 * 109.47228 * 120.00417 * 2 1 3 13 13 C 1.34784 * 119.99862 * 274.99523 * 12 2 1 14 14 O 1.21577 * 119.99952 * 0.02562 * 13 12 2 15 15 N 1.34779 * 119.99623 * 180.02562 * 13 12 2 16 16 C 1.39087 * 119.99507 * 180.02562 * 15 13 12 17 17 N 1.30144 * 126.08149 * 0.04110 * 16 15 13 18 18 N 1.26096 * 117.75133 * 179.67274 * 17 16 15 19 19 C 1.30343 * 117.67963 * 0.55344 * 18 17 16 20 20 C 1.47834 * 126.10861 * 179.75704 * 19 18 17 21 21 C 1.39540 * 122.81074 * 359.69672 * 20 19 18 22 22 C 1.32979 * 114.91794 * 180.29490 * 21 20 19 23 23 S 1.75800 * 109.99492 * 359.59033 * 22 21 20 24 24 C 1.34803 * 122.81766 * 179.71425 * 20 19 18 25 25 S 1.76468 * 126.07821 * 179.97438 * 16 15 13 26 26 H 1.09001 * 109.47083 * 59.99449 * 1 2 3 27 27 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47193 * 299.99597 * 1 2 3 29 29 H 0.96995 * 119.99771 * 179.97438 * 7 6 4 30 30 H 0.96999 * 120.00144 * 95.00214 * 12 2 1 31 31 H 0.96999 * 120.00389 * 359.97438 * 15 13 12 32 32 H 1.08002 * 122.53710 * 0.02562 * 21 20 19 33 33 H 1.08001 * 124.99972 * 179.72520 * 22 21 20 34 34 H 1.08001 * 125.23453 * 359.95767 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1453 -2.2875 -3.6040 10 1 1.1659 -1.5864 -4.8161 11 1 3.1464 -0.1871 -4.8166 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8576 1.1612 2.4118 15 7 2.5969 -0.6537 3.4574 16 6 2.7293 0.0401 4.6556 17 7 2.4541 1.2975 4.8477 18 7 2.6274 1.7662 6.0054 19 6 3.0803 0.9596 6.9237 20 6 3.3554 1.3108 8.3331 21 6 3.1567 2.5935 8.8454 22 6 3.4605 2.7362 10.1321 23 16 4.0215 1.2057 10.7906 24 6 3.8196 0.4190 9.2310 25 16 3.2988 -0.6287 6.1861 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7093 1.1619 -3.4844 30 1 2.2490 -1.6318 1.1524 31 1 2.8276 -1.5948 3.4138 32 1 2.7884 3.4096 8.2414 33 1 3.3732 3.6563 10.6909 34 1 4.0341 -0.6192 9.0245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157887035.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:01 Heat of formation + Delta-G solvation = 59.246686 kcal Electronic energy + Delta-G solvation = -21142.516694 eV Core-core repulsion = 17715.271872 eV Total energy + Delta-G solvation = -3427.244822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.046 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30125 -41.08353 -38.94751 -37.17068 -36.11341 -34.39893 -32.32639 -30.98959 -30.10690 -27.44629 -27.26315 -24.88212 -24.08085 -22.46802 -21.56454 -20.81009 -20.22180 -19.25013 -18.95904 -18.09145 -17.40254 -17.25933 -16.91934 -16.47332 -16.12287 -15.91250 -15.15989 -14.62555 -14.44618 -14.27078 -14.22539 -13.94867 -13.80945 -13.42431 -13.06446 -12.97739 -12.76642 -12.56672 -12.27872 -12.11934 -12.03522 -11.74925 -11.45579 -11.11376 -11.00164 -10.94172 -10.62570 -10.24334 -9.87449 -9.71114 -9.08995 -8.17924 -6.35583 -0.94648 -0.68932 -0.01353 0.09048 0.59139 0.89648 1.23954 1.39919 1.46176 1.48948 1.59542 1.95348 2.18063 2.40807 2.91411 3.13377 3.34887 3.75771 3.96891 4.00705 4.45748 4.51525 4.71242 4.87993 4.90909 4.99897 5.06650 5.19392 5.27704 5.32803 5.52587 5.56046 5.73605 5.98582 6.07139 6.71337 6.99127 7.31354 7.49591 7.64802 8.89003 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.045911 B = 0.002163 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.731410 B =12939.782712 C =13272.084250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.288 3.712 3 H -0.001 1.001 4 C -0.543 4.543 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.286 1.286 12 N -0.702 5.702 13 C 0.688 3.312 14 O -0.587 6.587 15 N -0.618 5.618 16 C 0.257 3.743 17 N -0.314 5.314 18 N -0.266 5.266 19 C 0.060 3.940 20 C -0.056 4.056 21 C -0.128 4.128 22 C -0.208 4.208 23 S 0.195 5.805 24 C -0.191 4.191 25 S 0.172 5.828 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.008 0.992 29 H 0.266 0.734 30 H 0.409 0.591 31 H 0.441 0.559 32 H 0.138 0.862 33 H 0.195 0.805 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.201 -8.020 27.954 30.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.017 0.983 4 C -0.581 4.581 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.180 1.180 10 H -0.205 1.205 11 H -0.212 1.212 12 N -0.356 5.356 13 C 0.385 3.615 14 O -0.461 6.461 15 N -0.275 5.275 16 C -0.115 4.115 17 N -0.157 5.157 18 N -0.103 5.103 19 C -0.222 4.222 20 C -0.074 4.074 21 C -0.159 4.159 22 C -0.343 4.343 23 S 0.459 5.541 24 C -0.332 4.332 25 S 0.413 5.587 26 H 0.087 0.913 27 H 0.064 0.936 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.283 0.717 32 H 0.156 0.844 33 H 0.213 0.787 34 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.197 -7.093 28.959 30.921 hybrid contribution -0.391 -0.139 -2.789 2.820 sum 7.807 -7.232 26.170 28.251 Atomic orbital electron populations 1.21935 0.98230 0.99728 0.99555 1.18345 0.91030 0.91763 0.80388 0.98281 1.21535 1.32650 1.13690 0.90264 0.90239 1.25838 0.94898 0.95609 1.02449 1.70071 1.36976 1.23934 1.24643 0.85231 0.78018 0.78470 0.78181 1.18033 1.20509 1.21241 1.45416 1.68439 1.14187 1.07607 1.16295 0.79109 0.85166 0.80904 1.91027 1.55474 1.15826 1.83800 1.41901 1.67025 1.14225 1.04320 1.26894 0.99977 0.92109 0.92492 1.71620 1.22328 1.09159 1.12592 1.71419 1.14375 1.29792 0.94669 1.27619 1.03851 0.91699 0.99060 1.16754 1.07464 0.95455 0.87712 1.20119 1.03207 0.96641 0.95965 1.25849 1.06934 1.03616 0.97905 1.84123 1.62110 1.00151 1.07734 1.26202 1.05452 1.04257 0.97274 1.84903 1.63901 1.10403 0.99443 0.91307 0.93595 0.97242 0.92521 0.75526 0.71683 0.84429 0.78745 0.79267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.29 14.89 2.56 44.25 0.11 15.00 16 3 H 0.00 -0.05 7.58 -2.38 -0.02 -0.06 16 4 C -0.54 -28.05 8.73 25.60 0.22 -27.82 16 5 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 6 C 0.01 0.65 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.64 11.32 21.45 0.24 -52.40 16 8 Si 0.98 41.38 29.54 68.60 2.03 43.40 16 9 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.70 -28.45 5.07 -461.41 -2.34 -30.79 16 13 C 0.69 28.71 8.49 179.05 1.52 30.23 16 14 O -0.59 -31.43 14.71 -3.96 -0.06 -31.49 16 15 N -0.62 -18.52 5.41 -322.79 -1.75 -20.27 16 16 C 0.26 8.20 8.42 179.03 1.51 9.71 16 17 N -0.31 -12.77 9.78 -55.66 -0.54 -13.31 16 18 N -0.27 -9.54 11.48 -49.45 -0.57 -10.10 16 19 C 0.06 1.57 7.51 87.46 0.66 2.22 16 20 C -0.06 -1.12 5.79 -21.21 -0.12 -1.25 16 21 C -0.13 -2.45 9.92 21.41 0.21 -2.24 16 22 C -0.21 -2.57 11.18 66.65 0.75 -1.82 16 23 S 0.19 1.84 23.32 -56.49 -1.32 0.53 16 24 C -0.19 -2.52 10.79 67.03 0.72 -1.80 16 25 S 0.17 3.47 23.03 -56.49 -1.30 2.17 16 26 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 27 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.41 12.89 8.55 -92.71 -0.79 12.09 16 31 H 0.44 8.31 8.84 -92.71 -0.82 7.49 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 33 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.19 1.54 7.88 -2.91 -0.02 1.52 16 Total: -1.00 -78.68 330.31 0.66 -78.01 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.43 Total: 17.16 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 6.69 Total: 17.09 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -4.96 Total: -126.87 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -0.06 Total: -31.49 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -2.62 Total: 2.69 kcal Total: -78.68 0.66 -78.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157887035.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.261 kcal (2) G-P(sol) polarization free energy of solvation -78.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds