Wall clock time and date at job start Tue Mar 31 2020 13:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30850 * 125.41667 * 2 1 4 4 C 1.33319 * 109.68945 * 179.79928 * 3 2 1 5 5 C 1.36698 * 107.78298 * 0.37427 * 4 3 2 6 6 C 1.46711 * 126.84817 * 179.89631 * 5 4 3 7 7 O 1.21701 * 119.99340 * 359.68816 * 6 5 4 8 8 N 1.34772 * 120.00104 * 179.68446 * 6 5 4 9 9 C 1.38748 * 120.00030 * 180.02562 * 8 6 5 10 10 N 1.29978 * 125.36720 * 180.02562 * 9 8 6 11 11 C 1.31596 * 117.13051 * 180.02562 * 10 9 8 12 12 C 1.50703 * 122.22886 * 180.26812 * 11 10 9 13 13 C 1.34665 * 115.53993 * 0.02562 * 11 10 9 14 14 S 1.76202 * 125.92607 * 180.02562 * 13 11 10 15 15 C 1.76201 * 100.00001 * 180.02562 * 14 13 11 16 16 H 1.08003 * 119.99851 * 0.02562 * 15 14 13 17 17 C 1.38418 * 120.00084 * 179.97438 * 15 14 13 18 18 N 1.31813 * 119.99930 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00189 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46869 * 0.02562 * 19 17 15 21 21 H 1.48492 * 109.47279 * 120.00081 * 19 17 15 22 22 H 1.48500 * 109.47354 * 240.00344 * 19 17 15 23 23 S 1.76143 * 125.36546 * 0.02562 * 9 8 6 24 24 N 1.34515 * 125.41198 * 180.02562 * 2 1 3 25 25 H 0.96999 * 126.48148 * 359.97438 * 24 2 1 26 26 H 1.08998 * 109.46951 * 269.95906 * 1 2 3 27 27 H 1.08995 * 109.46795 * 29.96187 * 1 2 3 28 28 H 1.09000 * 109.46809 * 149.96302 * 1 2 3 29 29 H 1.07998 * 126.10874 * 180.27528 * 4 3 2 30 30 H 0.97001 * 120.00055 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.46802 * 269.71666 * 12 11 10 32 32 H 1.09002 * 109.46827 * 29.71225 * 12 11 10 33 33 H 1.08998 * 109.46997 * 149.71776 * 12 11 10 34 34 H 0.97003 * 120.00174 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7050 0.0044 5 6 3.5977 -0.6611 -0.0012 6 6 4.8025 -1.4982 -0.0013 7 8 5.9036 -0.9797 -0.0018 8 7 4.6900 -2.8412 -0.0008 9 6 5.8294 -3.6329 -0.0004 10 7 5.8425 -4.9326 -0.0004 11 6 7.0197 -5.5209 0.0006 12 6 7.1687 -7.0205 -0.0053 13 6 8.0822 -4.6936 0.0020 14 16 9.7745 -5.1842 0.0029 15 6 10.5516 -3.6028 0.0054 16 1 9.9502 -2.7057 0.0064 17 6 11.9326 -3.5103 0.0073 18 7 12.6665 -4.6052 0.0066 19 14 12.7565 -1.8337 0.0093 20 1 11.7181 -0.7720 0.0091 21 1 13.6015 -1.6989 1.2229 22 1 13.6046 -1.6975 -1.2021 23 16 7.4863 -3.0350 0.0002 24 7 2.2865 -1.0963 -0.0005 25 1 1.9850 -2.0183 -0.0006 26 1 -0.3633 -0.0007 1.0277 27 1 -0.3633 0.8903 -0.5132 28 1 -0.3633 -0.8897 -0.5144 29 1 4.3977 1.3723 0.0097 30 1 3.8124 -3.2544 -0.0008 31 1 7.2067 -7.3858 1.0210 32 1 6.3179 -7.4682 -0.5190 33 1 8.0892 -7.2921 -0.5219 34 1 13.6344 -4.5404 0.0083 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339291670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:25 Heat of formation + Delta-G solvation = 33.949484 kcal Electronic energy + Delta-G solvation = -21274.469334 eV Core-core repulsion = 17846.127543 eV Total energy + Delta-G solvation = -3428.341791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.046 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.42239 -41.24460 -40.09722 -36.37561 -34.82497 -33.90003 -33.00931 -31.96289 -28.91848 -28.59429 -27.72662 -25.82563 -23.66977 -22.41917 -22.03192 -21.28959 -20.24456 -19.27867 -18.99746 -17.48464 -17.32477 -17.19000 -17.07561 -16.27262 -16.26113 -15.65567 -15.40500 -15.06805 -14.95263 -14.41961 -14.34848 -13.64299 -13.44654 -13.40703 -13.30004 -13.23198 -13.07625 -12.90533 -12.52583 -12.21289 -12.04077 -11.67681 -11.38719 -11.34444 -11.32752 -10.87518 -10.54303 -10.51725 -9.79325 -9.50118 -8.58721 -8.39506 -6.31188 -0.41480 0.13942 0.15667 0.77812 1.25914 1.32468 1.32646 1.42703 1.49047 1.58157 1.79344 1.85099 2.13464 2.14137 2.80891 3.07961 3.25769 3.51728 3.69276 3.96027 4.20932 4.40812 4.46381 4.59199 4.76665 4.80358 4.84424 4.93814 4.97909 5.13054 5.29557 5.35350 5.42889 5.75780 6.01670 6.20512 6.55781 6.74909 6.79265 6.86582 8.49122 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.017610 B = 0.003322 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.651523 B = 8426.959795 C = 9996.162814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.264 3.736 3 N -0.528 5.528 4 C 0.078 3.922 5 C -0.099 4.099 6 C 0.594 3.406 7 O -0.526 6.526 8 N -0.600 5.600 9 C 0.221 3.779 10 N -0.477 5.477 11 C 0.036 3.964 12 C -0.062 4.062 13 C -0.278 4.278 14 S 0.105 5.895 15 C -0.576 4.576 16 H 0.081 0.919 17 C 0.036 3.964 18 N -0.895 5.895 19 Si 0.985 3.015 20 H -0.268 1.268 21 H -0.264 1.264 22 H -0.264 1.264 23 S 0.164 5.836 24 N -0.538 5.538 25 H 0.440 0.560 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.108 0.892 29 H 0.185 0.815 30 H 0.430 0.570 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.462 4.128 0.003 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.000 4.000 3 N -0.248 5.248 4 C -0.077 4.077 5 C -0.214 4.214 6 C 0.382 3.618 7 O -0.402 6.402 8 N -0.251 5.251 9 C -0.151 4.151 10 N -0.198 5.198 11 C -0.105 4.105 12 C -0.122 4.122 13 C -0.514 4.514 14 S 0.354 5.646 15 C -0.724 4.724 16 H 0.099 0.901 17 C -0.171 4.171 18 N -0.529 5.529 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.188 1.188 22 H -0.188 1.188 23 S 0.409 5.591 24 N -0.145 5.145 25 H 0.283 0.717 26 H 0.123 0.877 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.202 0.798 30 H 0.271 0.729 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -23.133 4.841 -0.005 23.634 hybrid contribution 0.301 -0.251 0.014 0.392 sum -22.832 4.590 0.009 23.289 Atomic orbital electron populations 1.20618 0.80512 1.06372 1.05818 1.24405 0.97543 0.80592 0.97496 1.70297 1.01878 1.29728 1.22917 1.22887 0.95538 0.91302 0.97977 1.20153 0.83364 0.94956 1.22972 1.17254 0.88326 0.80185 0.76023 1.90867 1.27156 1.72208 1.49927 1.42151 1.06835 1.04761 1.71310 1.23925 0.92286 0.90644 1.08286 1.66016 1.28190 1.05708 1.19935 1.19701 0.84023 0.98466 1.08358 1.20254 1.02913 0.85818 1.03166 1.28624 1.06608 1.01119 1.15021 1.82893 0.85616 1.11584 1.84549 1.23491 0.95270 0.93483 1.60186 0.90087 1.25872 0.96432 1.02381 0.92455 1.70093 1.07240 1.29565 1.46042 0.85093 0.78257 0.77003 0.79033 1.19210 1.18833 1.18828 1.86104 0.96452 1.03473 1.73094 1.43147 1.04327 1.11478 1.55585 0.71744 0.87656 0.88148 0.87330 0.79783 0.72939 0.90256 0.89399 0.91318 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.25 10.51 71.24 0.75 0.50 16 2 C 0.26 3.49 8.12 138.20 1.12 4.62 16 3 N -0.53 -11.04 11.20 -187.35 -2.10 -13.14 16 4 C 0.08 1.80 11.66 84.11 0.98 2.78 16 5 C -0.10 -2.11 7.07 40.00 0.28 -1.82 16 6 C 0.59 16.69 7.75 86.46 0.67 17.36 16 7 O -0.53 -19.41 14.41 -4.35 -0.06 -19.47 16 8 N -0.60 -15.78 5.39 -313.19 -1.69 -17.46 16 9 C 0.22 8.02 8.39 179.19 1.50 9.52 16 10 N -0.48 -17.66 10.55 -184.95 -1.95 -19.62 16 11 C 0.04 1.46 6.73 41.78 0.28 1.74 16 12 C -0.06 -2.03 10.02 71.24 0.71 -1.31 16 13 C -0.28 -12.88 6.67 67.00 0.45 -12.43 16 14 S 0.11 5.46 20.74 -56.49 -1.17 4.29 16 15 C -0.58 -32.42 9.26 67.86 0.63 -31.79 16 16 H 0.08 4.57 5.97 -2.91 -0.02 4.55 16 17 C 0.04 1.96 5.49 84.74 0.46 2.43 16 18 N -0.89 -50.46 13.22 21.59 0.29 -50.18 16 19 Si 0.98 43.21 29.55 68.60 2.03 45.23 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 23 S 0.16 7.28 18.34 -56.49 -1.04 6.25 16 24 N -0.54 -6.64 6.07 -176.12 -1.07 -7.71 16 25 H 0.44 2.03 8.32 -92.71 -0.77 1.26 16 26 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.43 7.40 8.06 -92.71 -0.75 6.65 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.32 7.38 -2.39 -0.02 2.30 16 34 H 0.28 14.61 8.32 -92.71 -0.77 13.84 16 Total: -1.00 -74.94 329.29 0.75 -74.19 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -0.32 Total: 6.03 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 7.84 Total: -8.42 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -6.52 Total: -108.10 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.06 Total: -19.47 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 12.74 SS G_CDS: -2.21 Total: 10.54 kcal Total: -74.94 0.75 -74.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339291670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.140 kcal (2) G-P(sol) polarization free energy of solvation -74.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds