Wall clock time and date at job start Tue Mar 31 2020 14:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99858 * 2 1 4 4 O 1.21265 * 120.00348 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99762 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.46925 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.47300 * 180.02562 * 6 5 3 8 8 H 1.07999 * 119.99822 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00339 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00355 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99771 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47174 * 89.99890 * 11 9 7 13 13 H 1.48501 * 109.47062 * 209.99841 * 11 9 7 14 14 H 1.48504 * 109.46913 * 329.99640 * 11 9 7 15 15 C 1.38535 * 120.00196 * 180.02562 * 2 1 3 16 16 N 1.28788 * 124.81623 * 179.69211 * 15 2 1 17 17 C 1.34747 * 117.91704 * 179.77185 * 16 15 2 18 18 C 1.41139 * 128.73370 * 180.24480 * 17 16 15 19 19 C 1.37272 * 120.42237 * 180.27931 * 18 17 16 20 20 Cl 1.73602 * 119.70758 * 179.97438 * 19 18 17 21 21 C 1.38834 * 120.58029 * 359.97438 * 19 18 17 22 22 C 1.37686 * 119.97204 * 0.04641 * 21 19 18 23 23 C 1.39280 * 120.21967 * 359.95107 * 22 21 19 24 24 S 1.75811 * 124.81452 * 0.02562 * 15 2 1 25 25 H 1.08999 * 109.47441 * 89.99653 * 1 2 3 26 26 H 1.09005 * 109.47121 * 209.99861 * 1 2 3 27 27 H 1.08997 * 109.47160 * 329.99513 * 1 2 3 28 28 H 1.09000 * 109.47318 * 299.99141 * 5 3 2 29 29 H 1.09000 * 109.47161 * 59.99772 * 5 3 2 30 30 H 1.09004 * 109.46930 * 299.99901 * 6 5 3 31 31 H 1.09004 * 109.47059 * 59.99503 * 6 5 3 32 32 H 0.96991 * 119.99891 * 179.97438 * 10 9 7 33 33 H 1.08002 * 119.78742 * 0.25471 * 18 17 16 34 34 H 1.07997 * 120.01470 * 180.02562 * 21 19 18 35 35 H 1.08002 * 119.88532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3515 1.1673 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 6 1.6260 4.9404 0.0023 8 1 0.5460 4.9403 0.0031 9 6 2.3153 6.1344 0.0035 10 7 1.6577 7.2734 0.0041 11 14 4.1833 6.1345 0.0029 12 1 4.6779 6.1361 -1.3974 13 1 4.6785 7.3462 0.7041 14 1 4.6786 4.9212 0.7014 15 6 2.1578 -1.1997 -0.0005 16 7 3.4411 -1.3078 -0.0063 17 6 3.9698 -2.5472 -0.0012 18 6 5.3290 -2.9275 -0.0009 19 6 5.6795 -4.2547 -0.0011 20 17 7.3570 -4.7015 -0.0014 21 6 4.7042 -5.2428 -0.0009 22 6 3.3721 -4.8944 -0.0016 23 6 2.9984 -3.5527 -0.0015 24 16 1.4096 -2.7907 -0.0019 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 0.7584 2.5303 -0.8892 29 1 0.7589 2.5298 0.8908 30 1 3.0061 3.5771 0.8911 31 1 3.0062 3.5779 -0.8889 32 1 2.1427 8.1133 0.0053 33 1 6.0983 -2.1694 -0.0010 34 1 4.9902 -6.2842 -0.0006 35 1 2.6146 -5.6642 -0.0020 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362188674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:42 Heat of formation + Delta-G solvation = 4.250650 kcal Electronic energy + Delta-G solvation = -21469.889604 eV Core-core repulsion = 18005.923517 eV Total energy + Delta-G solvation = -3463.966087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.044 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.89056 -40.90903 -38.43180 -37.44310 -36.43210 -35.60669 -33.39430 -32.10562 -30.75652 -28.55102 -27.99261 -25.87440 -24.34679 -23.50527 -22.37740 -20.29051 -19.80274 -19.17899 -18.37333 -17.79403 -17.49161 -16.93878 -16.61863 -16.20604 -16.10495 -15.93051 -15.04921 -15.01028 -14.96636 -14.63064 -14.09089 -14.02793 -13.90071 -13.69664 -13.40125 -13.18322 -12.96901 -12.50353 -12.28891 -12.13384 -12.02349 -12.00944 -11.82262 -11.46083 -11.34110 -11.15835 -10.86332 -10.79495 -10.39485 -9.24449 -9.20387 -8.33182 -6.35318 -0.76758 -0.30113 -0.18486 0.36445 0.92769 1.01649 1.30217 1.33368 1.47461 1.49773 1.67395 2.32551 2.43951 2.99361 3.02914 3.47470 3.61970 3.89690 4.00541 4.03847 4.22364 4.28846 4.35667 4.51312 4.61907 4.69433 4.76420 4.88078 4.90863 5.01504 5.15738 5.30906 5.36965 5.38081 5.56466 5.74350 6.21498 6.58645 6.70830 6.93896 7.30227 8.82053 Molecular weight = 324.04amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.002985 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.609281 B = 9379.187520 C =11037.046360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.530 5.530 3 C 0.505 3.495 4 O -0.519 6.519 5 C -0.104 4.104 6 C 0.002 3.998 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.019 3.981 10 N -0.940 5.940 11 Si 0.930 3.070 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.266 1.266 15 C 0.323 3.677 16 N -0.530 5.530 17 C 0.096 3.904 18 C -0.090 4.090 19 C -0.015 4.015 20 Cl -0.054 7.054 21 C -0.097 4.097 22 C -0.039 4.039 23 C -0.205 4.205 24 S 0.149 5.851 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.008 0.992 31 H 0.006 0.994 32 H 0.267 0.733 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -31.759 0.042 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.260 5.260 3 C 0.294 3.706 4 O -0.390 6.390 5 C -0.144 4.144 6 C -0.036 4.036 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.179 4.179 10 N -0.580 5.580 11 Si 0.755 3.245 12 H -0.196 1.196 13 H -0.203 1.203 14 H -0.191 1.191 15 C -0.050 4.050 16 N -0.253 5.253 17 C -0.024 4.024 18 C -0.112 4.112 19 C -0.045 4.045 20 Cl -0.025 7.025 21 C -0.118 4.118 22 C -0.061 4.061 23 C -0.325 4.325 24 S 0.400 5.600 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.198 0.802 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.038 -31.302 0.035 31.369 hybrid contribution 2.165 0.863 -0.009 2.331 sum 0.127 -30.439 0.025 30.440 Atomic orbital electron populations 1.22663 0.72818 1.06941 1.06151 1.45736 1.09784 1.01136 1.69365 1.22050 0.88250 0.85853 0.74487 1.90764 1.16073 1.86864 1.45343 1.21615 0.99108 0.87419 1.06220 1.19270 0.95058 0.92918 0.96324 1.21357 0.94638 0.90061 1.50146 0.92171 1.25690 1.02379 0.95439 0.94439 1.69994 1.37482 0.98099 1.52447 0.85959 0.81670 0.77826 0.79023 1.19578 1.20309 1.19091 1.24527 0.89982 0.92558 0.97884 1.66373 1.10920 1.24874 1.23098 1.18916 0.95163 0.85463 1.02878 1.20482 0.93245 0.95703 1.01764 1.20615 0.86776 0.93119 1.03954 1.98390 1.14745 1.92526 1.96793 1.21352 0.90374 1.00444 0.99672 1.20689 0.96971 0.91941 0.96541 1.24067 0.96238 0.99883 1.12309 1.84275 1.03421 0.94517 1.77739 0.88174 0.88061 0.86557 0.86437 0.86370 0.97398 0.97539 0.92354 0.85420 0.80197 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.80 9.94 127.77 1.27 2.07 16 2 N -0.53 -14.63 3.06 -663.71 -2.03 -16.66 16 3 C 0.51 18.56 7.63 87.66 0.67 19.23 16 4 O -0.52 -24.55 14.60 -2.98 -0.04 -24.59 16 5 C -0.10 -3.68 4.19 29.85 0.13 -3.55 16 6 C 0.00 0.12 3.33 29.85 0.10 0.22 16 7 C -0.52 -29.28 9.66 25.60 0.25 -29.03 16 8 H 0.06 3.46 7.99 -2.91 -0.02 3.44 16 9 C 0.02 1.10 5.47 84.65 0.46 1.56 16 10 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 11 Si 0.93 46.91 27.47 68.60 1.88 48.80 16 12 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 13 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.27 -13.57 6.54 99.48 0.65 -12.92 16 15 C 0.32 9.46 7.81 179.60 1.40 10.86 16 16 N -0.53 -19.08 8.63 -188.86 -1.63 -20.71 16 17 C 0.10 2.84 6.94 39.79 0.28 3.12 16 18 C -0.09 -2.39 9.86 22.75 0.22 -2.17 16 19 C -0.01 -0.29 6.29 22.18 0.14 -0.15 16 20 Cl -0.05 -0.95 28.93 -2.72 -0.08 -1.03 16 21 C -0.10 -1.29 9.82 22.28 0.22 -1.07 16 22 C -0.04 -0.53 10.05 22.39 0.23 -0.30 16 23 C -0.21 -4.40 6.52 22.90 0.15 -4.25 16 24 S 0.15 2.74 21.91 -56.49 -1.24 1.50 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.00 7.05 -2.38 -0.02 0.98 16 27 H 0.12 1.46 6.44 -2.39 -0.02 1.44 16 28 H 0.12 3.59 8.11 -2.39 -0.02 3.57 16 29 H 0.12 3.58 7.40 -2.39 -0.02 3.56 16 30 H 0.01 0.40 7.16 -2.38 -0.02 0.38 16 31 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 32 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 33 H 0.13 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -80.63 329.14 3.75 -76.88 By element: Atomic # 1 Polarization: -4.18 SS G_CDS: 1.08 Total: -3.10 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 5.51 Total: -3.48 kcal Atomic # 7 Polarization: -91.61 SS G_CDS: -3.36 Total: -94.98 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.59 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.88 Total: 48.80 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.24 Total: 1.50 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -80.63 3.75 -76.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362188674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.134 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds