Wall clock time and date at job start Tue Mar 31 2020 13:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48501 * 109.46952 * 239.99733 * 3 2 1 5 5 H 1.48502 * 109.47143 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47234 * 119.99664 * 3 2 1 7 7 C 1.37869 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47098 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.46855 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99771 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46947 * 179.97438 * 12 11 10 14 14 N 1.30977 * 126.43723 * 90.29779 * 13 12 11 15 15 C 1.35218 * 105.57863 * 180.13704 * 14 13 12 16 16 C 1.48423 * 126.41528 * 179.84192 * 15 14 13 17 17 C 1.39350 * 120.11320 * 179.71802 * 16 15 14 18 18 C 1.38001 * 119.90398 * 180.28047 * 17 16 15 19 19 C 1.38322 * 120.13316 * 359.46786 * 18 17 16 20 20 C 1.38414 * 120.23075 * 0.55362 * 19 18 17 21 21 Cl 1.73597 * 119.95623 * 179.72228 * 20 19 18 22 22 C 1.38165 * 120.08833 * 359.70601 * 20 19 18 23 23 N 1.30758 * 107.17062 * 359.58571 * 15 14 13 24 24 O 1.21295 * 110.09989 * 0.26277 * 23 15 14 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47274 * 59.99449 * 9 7 2 27 27 H 1.09002 * 109.46953 * 299.99157 * 9 7 2 28 28 H 1.08995 * 109.47488 * 59.99604 * 10 9 7 29 29 H 1.09000 * 109.46838 * 299.98979 * 10 9 7 30 30 H 1.09003 * 109.47106 * 59.99726 * 12 11 10 31 31 H 1.08998 * 109.47187 * 299.99672 * 12 11 10 32 32 H 1.08002 * 120.04477 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.93132 * 179.74946 * 18 17 16 34 34 H 1.08005 * 119.88404 * 180.27864 * 19 18 17 35 35 H 1.08005 * 120.06604 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 6 2.6652 -6.4701 0.0004 13 6 2.0636 -7.8518 0.0016 14 7 1.7570 -8.5677 -1.0515 15 6 1.2479 -9.7238 -0.5691 16 6 0.7483 -10.8688 -1.3706 17 6 0.2538 -12.0052 -0.7335 18 6 -0.2043 -13.0696 -1.4829 19 6 -0.1837 -13.0060 -2.8645 20 6 0.3067 -11.8801 -3.5031 21 17 0.3359 -11.8109 -5.2374 22 6 0.7726 -10.8112 -2.7620 23 7 1.2833 -9.6464 0.7357 24 8 1.7482 -8.5795 1.0775 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6243 -2.5567 0.8904 28 1 2.8722 -3.6042 0.8904 29 1 2.8720 -3.6043 -0.8896 30 1 3.2821 -6.3420 0.8899 31 1 3.2807 -6.3422 -0.8900 32 1 0.2337 -12.0548 0.3452 33 1 -0.5839 -13.9522 -0.9896 34 1 -0.5474 -13.8396 -3.4471 35 1 1.1556 -9.9330 -3.2607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376460710.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:22 Heat of formation + Delta-G solvation = 76.106587 kcal Electronic energy + Delta-G solvation = -20357.145067 eV Core-core repulsion = 16896.294887 eV Total energy + Delta-G solvation = -3460.850180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.044 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.75901 -39.75492 -36.93658 -36.07632 -34.00358 -33.76511 -31.46344 -31.15655 -30.96227 -29.10121 -25.35901 -25.19161 -23.75593 -22.75153 -21.67228 -21.01339 -18.41008 -18.32449 -17.10776 -16.60358 -16.22207 -15.98921 -15.61040 -14.94390 -14.68992 -14.55043 -14.28160 -14.10021 -14.03876 -13.53073 -13.34296 -12.57495 -12.51627 -12.24807 -12.15638 -12.01368 -11.72292 -11.59433 -11.33413 -11.26531 -11.05818 -10.78396 -10.50587 -10.28738 -9.80410 -9.66930 -9.34040 -9.19161 -9.07943 -8.47274 -7.39739 -6.11181 -4.16639 0.20992 0.69775 0.79836 1.67445 1.82057 2.28110 2.52739 2.93016 3.14126 3.23083 3.27549 3.32787 3.34517 3.64540 4.34451 4.37458 4.45656 4.57423 4.64654 4.81716 4.86661 5.06586 5.15944 5.24539 5.30405 5.43401 5.59189 5.74518 5.81892 5.85191 5.88785 6.02135 6.19010 6.58777 7.48275 7.55337 7.83600 7.87485 8.19434 8.87922 9.47746 10.99450 Molecular weight = 324.04amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.002030 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.763715 B =13790.621494 C =14705.378024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.243 6.243 12 C -0.016 4.016 13 C 0.219 3.781 14 N -0.462 5.462 15 C 0.208 3.792 16 C -0.004 4.004 17 C -0.080 4.080 18 C -0.109 4.109 19 C -0.094 4.094 20 C -0.038 4.038 21 Cl -0.060 7.060 22 C -0.066 4.066 23 N -0.371 5.371 24 O 0.092 5.908 25 H 0.264 0.736 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -26.908 -3.751 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.208 4.208 11 S -0.017 6.017 12 C -0.165 4.165 13 C -0.002 4.002 14 N -0.196 5.196 15 C -0.062 4.062 16 C -0.006 4.006 17 C -0.100 4.100 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.065 4.065 21 Cl -0.031 7.031 22 C -0.087 4.087 23 N -0.077 5.077 24 O 0.030 5.970 25 H 0.074 0.926 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.298 -27.702 -3.796 27.991 hybrid contribution 1.752 1.351 -0.091 2.214 sum 3.050 -26.351 -3.887 26.810 Atomic orbital electron populations 1.69961 1.06094 1.27119 1.49600 1.25017 0.94919 0.99370 0.94942 0.86556 0.79501 0.82660 0.78694 1.20111 1.21167 1.20106 1.21010 0.92988 0.90023 1.52282 0.92340 1.18922 0.93431 0.89042 0.98787 1.23857 1.01653 0.91379 1.03867 1.87473 1.13823 1.02247 1.98126 1.21736 1.00449 0.85761 1.08581 1.27699 0.95528 0.96571 0.80435 1.72020 1.16753 1.02584 1.28228 1.23720 1.00567 0.94309 0.87613 1.17170 1.01599 0.90606 0.91221 1.21310 0.95893 0.91734 1.01088 1.21054 0.99814 0.98873 0.92928 1.21257 0.98189 0.96951 0.94913 1.20769 1.03956 0.96424 0.85352 1.98394 1.97197 1.98474 1.09082 1.21122 0.97144 0.98281 0.92135 1.74864 1.16767 1.01284 1.14748 1.85308 1.56581 1.19697 1.35436 0.92628 0.95359 0.95353 0.90649 0.90656 0.86314 0.85611 0.84406 0.84118 0.84318 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.91 4.98 -27.88 -0.14 0.78 16 10 C -0.06 -1.12 5.88 37.16 0.22 -0.90 16 11 S -0.24 -4.10 21.72 -107.50 -2.33 -6.44 16 12 C -0.02 -0.20 6.57 36.01 0.24 0.04 16 13 C 0.22 2.91 7.76 -12.99 -0.10 2.81 16 14 N -0.46 -6.57 11.26 -9.88 -0.11 -6.68 16 15 C 0.21 2.81 7.80 -156.12 -1.22 1.59 16 16 C 0.00 -0.04 5.88 -104.90 -0.62 -0.66 16 17 C -0.08 -0.72 9.69 -39.25 -0.38 -1.10 16 18 C -0.11 -0.73 10.03 -39.64 -0.40 -1.13 16 19 C -0.09 -0.67 9.82 -39.49 -0.39 -1.06 16 20 C -0.04 -0.35 6.31 -39.54 -0.25 -0.60 16 21 Cl -0.06 -0.53 28.95 -51.86 -1.50 -2.03 16 22 C -0.07 -0.70 9.48 -39.22 -0.37 -1.07 16 23 N -0.37 -5.13 11.86 30.97 0.37 -4.76 16 24 O 0.09 1.25 11.29 18.05 0.20 1.45 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 30 H 0.12 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.14 1.15 7.87 -52.49 -0.41 0.73 16 33 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 34 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.15 1.63 7.88 -52.48 -0.41 1.22 16 LS Contribution 344.76 15.07 5.20 5.20 Total: -1.00 -30.28 344.76 -10.03 -40.31 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.75 Total: -3.53 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.82 Total: -14.06 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.99 Total: -36.71 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -4.10 SS G_CDS: -2.33 Total: -6.44 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.28 -10.03 -40.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376460710.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.420 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds