Wall clock time and date at job start Tue Mar 31 2020 13:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48501 * 109.46952 * 239.99733 * 3 2 1 5 5 H 1.48502 * 109.47143 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47234 * 119.99664 * 3 2 1 7 7 C 1.37869 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47098 * 179.97438 * 9 7 2 11 11 S 1.81402 * 109.46855 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99771 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.46947 * 179.97438 * 12 11 10 14 14 N 1.30977 * 126.43723 * 90.29779 * 13 12 11 15 15 C 1.35218 * 105.57863 * 180.13704 * 14 13 12 16 16 C 1.48423 * 126.41528 * 179.84192 * 15 14 13 17 17 C 1.39350 * 120.11320 * 179.71802 * 16 15 14 18 18 C 1.38001 * 119.90398 * 180.28047 * 17 16 15 19 19 C 1.38322 * 120.13316 * 359.46786 * 18 17 16 20 20 C 1.38414 * 120.23075 * 0.55362 * 19 18 17 21 21 Cl 1.73597 * 119.95623 * 179.72228 * 20 19 18 22 22 C 1.38165 * 120.08833 * 359.70601 * 20 19 18 23 23 N 1.30758 * 107.17062 * 359.58571 * 15 14 13 24 24 O 1.21295 * 110.09989 * 0.26277 * 23 15 14 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47274 * 59.99449 * 9 7 2 27 27 H 1.09002 * 109.46953 * 299.99157 * 9 7 2 28 28 H 1.08995 * 109.47488 * 59.99604 * 10 9 7 29 29 H 1.09000 * 109.46838 * 299.98979 * 10 9 7 30 30 H 1.09003 * 109.47106 * 59.99726 * 12 11 10 31 31 H 1.08998 * 109.47187 * 299.99672 * 12 11 10 32 32 H 1.08002 * 120.04477 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.93132 * 179.74946 * 18 17 16 34 34 H 1.08005 * 119.88404 * 180.27864 * 19 18 17 35 35 H 1.08005 * 120.06604 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 16 1.3385 -5.2330 0.0013 12 6 2.6652 -6.4701 0.0004 13 6 2.0636 -7.8518 0.0016 14 7 1.7570 -8.5677 -1.0515 15 6 1.2479 -9.7238 -0.5691 16 6 0.7483 -10.8688 -1.3706 17 6 0.2538 -12.0052 -0.7335 18 6 -0.2043 -13.0696 -1.4829 19 6 -0.1837 -13.0060 -2.8645 20 6 0.3067 -11.8801 -3.5031 21 17 0.3359 -11.8109 -5.2374 22 6 0.7726 -10.8112 -2.7620 23 7 1.2833 -9.6464 0.7357 24 8 1.7482 -8.5795 1.0775 25 1 -0.4850 0.8401 0.0004 26 1 0.6248 -2.5570 -0.8896 27 1 0.6243 -2.5567 0.8904 28 1 2.8722 -3.6042 0.8904 29 1 2.8720 -3.6043 -0.8896 30 1 3.2821 -6.3420 0.8899 31 1 3.2807 -6.3422 -0.8900 32 1 0.2337 -12.0548 0.3452 33 1 -0.5839 -13.9522 -0.9896 34 1 -0.5474 -13.8396 -3.4471 35 1 1.1556 -9.9330 -3.2607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376460710.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:22 Heat of formation + Delta-G solvation = 59.490813 kcal Electronic energy + Delta-G solvation = -20357.865581 eV Core-core repulsion = 16896.294887 eV Total energy + Delta-G solvation = -3461.570694 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 324.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.79070 -40.43869 -37.65543 -37.04740 -35.75323 -34.96779 -32.89028 -32.16974 -31.88613 -30.11525 -27.29774 -26.09096 -24.66712 -23.49751 -23.21704 -22.18585 -19.46288 -19.22540 -18.64151 -17.93392 -17.27417 -16.88727 -16.50359 -16.48627 -15.91546 -15.69402 -15.33815 -15.04780 -14.80799 -14.79817 -14.54622 -13.98575 -13.57713 -13.54574 -13.38769 -12.86883 -12.84927 -12.74067 -12.58792 -12.42157 -12.28366 -12.12214 -11.98954 -11.75359 -11.67692 -11.13848 -10.88784 -10.57332 -10.04881 -9.82118 -8.75248 -8.20659 -6.33802 -0.63304 -0.25181 0.03579 0.76788 0.99381 1.27005 1.44382 1.47107 1.48888 1.54934 1.62969 2.22641 2.43015 2.52246 2.68623 3.13422 3.55897 3.73997 3.88961 3.93576 3.97599 4.18174 4.23682 4.32944 4.39332 4.42074 4.44728 4.66197 4.75303 4.91240 5.04326 5.14383 5.20957 5.42355 5.52422 5.57156 5.76706 6.12591 6.81430 6.84878 7.35939 8.90856 Molecular weight = 324.04amu Principal moments of inertia in cm(-1) A = 0.020362 B = 0.002030 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.763715 B =13790.621494 C =14705.378024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.073 0.927 9 C 0.041 3.959 10 C -0.044 4.044 11 S -0.286 6.286 12 C 0.004 3.996 13 C 0.217 3.783 14 N -0.480 5.480 15 C 0.205 3.795 16 C -0.031 4.031 17 C -0.083 4.083 18 C -0.096 4.096 19 C -0.083 4.083 20 C -0.046 4.046 21 Cl -0.061 7.061 22 C -0.078 4.078 23 N -0.382 5.382 24 O 0.087 5.913 25 H 0.264 0.736 26 H -0.005 1.005 27 H -0.003 1.003 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.218 -28.596 -3.774 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.092 0.908 9 C 0.002 3.998 10 C -0.192 4.192 11 S -0.060 6.060 12 C -0.145 4.145 13 C -0.004 4.004 14 N -0.214 5.214 15 C -0.064 4.064 16 C -0.033 4.033 17 C -0.103 4.103 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.073 4.073 21 Cl -0.033 7.033 22 C -0.099 4.099 23 N -0.089 5.089 24 O 0.027 5.973 25 H 0.073 0.927 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.195 0.805 34 H 0.185 0.815 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.706 -29.384 -3.812 29.753 hybrid contribution 1.270 1.687 -0.121 2.115 sum 3.976 -27.697 -3.934 28.256 Atomic orbital electron populations 1.70116 1.08026 1.28037 1.51127 1.26030 0.95742 1.03598 0.94550 0.85413 0.78117 0.77605 0.79386 1.18939 1.21339 1.18802 1.21523 0.93919 0.91047 1.51262 0.90850 1.18700 0.93899 0.91503 0.95701 1.23458 1.00058 0.90304 1.05400 1.87572 1.16818 1.03299 1.98353 1.21814 0.98346 0.82885 1.11423 1.27892 0.95353 0.96891 0.80290 1.72027 1.17266 1.03224 1.28859 1.24171 0.99900 0.94651 0.87724 1.17343 1.03566 0.91024 0.91411 1.21497 0.95606 0.91607 1.01573 1.21459 0.98110 0.99096 0.92685 1.21646 0.96473 0.96762 0.95370 1.20891 1.04334 0.96760 0.85328 1.98393 1.97226 1.98504 1.09131 1.21044 0.98123 0.98614 0.92125 1.74839 1.17510 1.01565 1.14985 1.85284 1.56710 1.19797 1.35516 0.92698 0.98665 0.98411 0.88837 0.89260 0.82882 0.83491 0.83986 0.80451 0.81478 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.82 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -28.94 9.11 25.60 0.23 -28.70 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.04 2.06 4.98 29.85 0.15 2.21 16 10 C -0.04 -1.64 5.88 71.98 0.42 -1.22 16 11 S -0.29 -9.62 21.72 -56.49 -1.23 -10.85 16 12 C 0.00 0.08 6.57 71.24 0.47 0.55 16 13 C 0.22 5.60 7.76 88.36 0.69 6.28 16 14 N -0.48 -13.61 11.26 -302.50 -3.41 -17.02 16 15 C 0.21 5.56 7.80 137.30 1.07 6.64 16 16 C -0.03 -0.70 5.88 -20.04 -0.12 -0.82 16 17 C -0.08 -1.37 9.69 22.48 0.22 -1.15 16 18 C -0.10 -1.00 10.03 22.23 0.22 -0.78 16 19 C -0.08 -0.96 9.82 22.33 0.22 -0.74 16 20 C -0.05 -0.79 6.31 22.29 0.14 -0.65 16 21 Cl -0.06 -1.02 28.95 -2.72 -0.08 -1.10 16 22 C -0.08 -1.66 9.48 22.50 0.21 -1.45 16 23 N -0.38 -10.49 11.86 -59.13 -0.70 -11.19 16 24 O 0.09 2.33 11.29 74.65 0.84 3.17 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 28 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.15 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.15 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.14 2.17 7.87 -2.91 -0.02 2.15 16 33 H 0.18 0.57 8.06 -2.91 -0.02 0.54 16 34 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.13 3.11 7.88 -2.91 -0.02 3.09 16 Total: -1.00 -68.11 344.76 3.25 -64.86 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: 1.12 Total: 2.70 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 4.39 Total: -19.41 kcal Atomic # 7 Polarization: -80.21 SS G_CDS: -3.82 Total: -84.03 kcal Atomic # 8 Polarization: 2.33 SS G_CDS: 0.84 Total: 3.17 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -9.62 SS G_CDS: -1.23 Total: -10.85 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -68.11 3.25 -64.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376460710.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.352 kcal (2) G-P(sol) polarization free energy of solvation -68.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds