Wall clock time and date at job start Tue Mar 31 2020 14:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17407 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46886 * 268.45906 * 3 2 1 5 5 C 1.36933 * 119.99835 * 87.73523 * 4 3 2 6 6 H 1.08005 * 119.99849 * 165.05895 * 5 4 3 7 7 C 1.38811 * 120.00100 * 345.05784 * 5 4 3 8 8 N 1.31619 * 120.00224 * 352.50822 * 7 5 4 9 9 Si 1.86801 * 119.99758 * 172.50731 * 7 5 4 10 10 H 1.48498 * 109.47501 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46932 * 120.00427 * 9 7 5 12 12 H 1.48503 * 109.47152 * 239.99908 * 9 7 5 13 13 S 1.65601 * 119.99714 * 267.45580 * 4 3 2 14 14 O 1.42097 * 106.40416 * 23.81905 * 13 4 3 15 15 O 1.42108 * 106.39877 * 156.73765 * 13 4 3 16 16 C 1.76196 * 107.21890 * 270.27700 * 13 4 3 17 17 C 1.38257 * 120.00043 * 114.72956 * 16 13 4 18 18 C 1.38214 * 119.99829 * 179.76529 * 17 16 13 19 19 N 1.48022 * 120.00133 * 180.23454 * 18 17 16 20 20 O 1.21794 * 120.00228 * 180.27376 * 19 18 17 21 21 O 1.21803 * 119.99786 * 0.27280 * 19 18 17 22 22 C 1.38259 * 120.00132 * 0.50575 * 18 17 16 23 23 C 1.38210 * 119.99755 * 359.74990 * 22 18 17 24 24 C 1.38217 * 120.00289 * 294.99981 * 16 13 4 25 25 C 1.50706 * 119.99452 * 0.02562 * 24 16 13 26 26 H 4.40641 * 5.51397 * 180.02562 * 4 1 2 27 27 H 1.08998 * 109.47098 * 148.46191 * 3 2 1 28 28 H 1.08998 * 109.47609 * 28.46242 * 3 2 1 29 29 H 0.96993 * 120.00180 * 179.97438 * 8 7 5 30 30 H 1.07992 * 120.00078 * 0.02562 * 17 16 13 31 31 H 1.08005 * 120.00078 * 179.72380 * 22 18 17 32 32 H 1.08002 * 119.99891 * 179.97438 * 23 22 18 33 33 H 1.09000 * 109.46807 * 90.00207 * 25 24 16 34 34 H 1.09006 * 109.46691 * 209.99501 * 25 24 16 35 35 H 1.09000 * 109.47187 * 329.99589 * 25 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0380 1.3808 5 6 3.3188 -1.1287 2.0735 6 1 3.8963 -1.1292 2.9862 7 6 2.7637 -2.3106 1.6027 8 7 1.9402 -2.2879 0.5762 9 14 3.1855 -3.9335 2.4261 10 1 4.1257 -3.6892 3.5492 11 1 1.9447 -4.5612 2.9474 12 1 3.8207 -4.8403 1.4364 13 16 3.4696 1.4908 2.1014 14 8 2.6982 2.4669 1.4147 15 8 3.3793 1.2739 3.5029 16 6 5.1583 1.8633 1.7633 17 6 5.4819 2.9557 0.9801 18 6 6.8067 3.2506 0.7190 19 7 7.1534 4.4231 -0.1153 20 8 8.3207 4.6802 -0.3495 21 8 6.2713 5.1309 -0.5675 22 6 7.8080 2.4472 1.2323 23 6 7.4842 1.3521 2.0109 24 6 6.1593 1.0602 2.2765 25 6 5.8062 -0.1345 3.1248 26 1 -1.0500 -0.0002 0.0000 27 1 3.0090 0.8767 -0.5375 28 1 3.0099 -0.9026 -0.4897 29 1 1.5527 -3.1139 0.2470 30 1 4.6997 3.5809 0.5758 31 1 8.8431 2.6751 1.0246 32 1 8.2664 0.7243 2.4116 33 1 5.6823 -1.0093 2.4865 34 1 6.6052 -0.3189 3.8430 35 1 4.8760 0.0609 3.6583 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394303743.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:00 Heat of formation + Delta-G solvation = 22.555314 kcal Electronic energy + Delta-G solvation = -25742.999443 eV Core-core repulsion = 21839.117942 eV Total energy + Delta-G solvation = -3903.881502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.066 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.37573 -40.74005 -38.45052 -38.05667 -37.78043 -36.90385 -34.59258 -33.49768 -32.83395 -32.77116 -29.85195 -28.22773 -26.32005 -25.53942 -24.81076 -23.07581 -21.18033 -20.30129 -19.92905 -19.65212 -18.83718 -18.72805 -18.26340 -17.52418 -17.18816 -16.85024 -16.23245 -16.15081 -15.32228 -15.30876 -15.12760 -14.92660 -14.33868 -13.84384 -13.75137 -13.55418 -13.33227 -13.26521 -13.15033 -12.88214 -12.80483 -12.70748 -12.65388 -12.39527 -12.38614 -12.15512 -11.92225 -11.56783 -11.46751 -10.99740 -10.82276 -10.54114 -10.44328 -9.96265 -7.96657 -5.80447 -1.34884 -0.72349 -0.50178 0.14067 0.22707 1.51625 1.56595 1.64927 1.81075 2.05616 2.40865 2.54656 2.64662 2.81075 3.16232 3.23134 3.31472 3.44215 3.54081 3.68894 3.89932 4.01090 4.25623 4.36856 4.43583 4.48379 4.56727 4.79350 4.95300 5.01218 5.05011 5.23440 5.33291 5.42606 5.58272 5.72636 6.40899 6.49496 7.08706 7.27883 7.41001 8.96467 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.005123 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.475577 B = 5463.727661 C = 6308.636007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.126 4.126 3 C 0.255 3.745 4 N -0.853 5.853 5 C -0.344 4.344 6 H 0.135 0.865 7 C -0.004 4.004 8 N -0.900 5.900 9 Si 0.971 3.029 10 H -0.247 1.247 11 H -0.299 1.299 12 H -0.281 1.281 13 S 2.681 3.319 14 O -0.995 6.995 15 O -0.974 6.974 16 C -0.690 4.690 17 C 0.032 3.968 18 C -0.091 4.091 19 N 0.034 4.966 20 O -0.137 6.137 21 O -0.210 6.210 22 C 0.005 3.995 23 C -0.124 4.124 24 C 0.081 3.919 25 C -0.195 4.195 26 H 0.226 0.774 27 H 0.069 0.931 28 H 0.114 0.886 29 H 0.260 0.740 30 H 0.156 0.844 31 H 0.193 0.807 32 H 0.204 0.796 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.741 1.847 2.192 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.128 4.128 3 C 0.130 3.870 4 N -0.686 5.686 5 C -0.473 4.473 6 H 0.152 0.848 7 C -0.206 4.206 8 N -0.541 5.541 9 Si 0.797 3.203 10 H -0.170 1.170 11 H -0.226 1.226 12 H -0.207 1.207 13 S 2.773 3.227 14 O -0.985 6.985 15 O -0.965 6.965 16 C -0.776 4.776 17 C 0.011 3.989 18 C -0.175 4.175 19 N 0.551 4.449 20 O -0.362 6.362 21 O -0.414 6.414 22 C -0.014 4.014 23 C -0.143 4.143 24 C 0.080 3.920 25 C -0.250 4.250 26 H 0.243 0.757 27 H 0.087 0.913 28 H 0.132 0.868 29 H 0.071 0.929 30 H 0.173 0.827 31 H 0.210 0.790 32 H 0.221 0.779 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.880 1.734 2.978 12.369 hybrid contribution -0.131 -0.434 -0.538 0.704 sum 11.748 1.300 2.439 12.069 Atomic orbital electron populations 1.25040 0.96487 1.07452 1.01127 1.23641 0.95391 0.94718 0.99100 1.18000 0.84217 1.01679 0.83145 1.52921 1.75171 1.19466 1.21010 1.20162 1.34013 0.84478 1.08630 0.84826 1.25867 0.95449 1.01682 0.97561 1.70151 1.30048 1.27222 1.26658 0.85190 0.77844 0.78605 0.78692 1.16992 1.22593 1.20707 1.01888 0.74850 0.72589 0.73396 1.93489 1.68564 1.60875 1.75607 1.93438 1.86594 1.85550 1.30876 1.31237 1.27009 1.05946 1.13413 1.20708 0.95742 0.93079 0.89327 1.21264 0.96417 0.93275 1.06582 1.43714 1.00417 1.01570 0.99243 1.94459 1.03775 1.75907 1.62010 1.94593 1.43161 1.48497 1.55121 1.21730 1.00575 0.90037 0.89028 1.21766 0.96271 0.97379 0.98874 1.20406 0.93099 0.91381 0.87162 1.22359 1.06505 0.95366 1.00802 0.75731 0.91323 0.86828 0.92937 0.82658 0.78986 0.77872 0.86136 0.85793 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 63. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.56 19.25 74.32 1.43 -11.13 16 2 C -0.13 -6.00 11.15 31.12 0.35 -5.65 16 3 C 0.25 11.28 5.08 84.57 0.43 11.71 16 4 N -0.85 -37.25 2.88 -352.51 -1.01 -38.26 16 5 C -0.34 -15.26 7.62 84.03 0.64 -14.62 16 6 H 0.13 5.38 4.17 -2.91 -0.01 5.37 16 7 C 0.00 -0.19 5.25 84.86 0.45 0.26 16 8 N -0.90 -44.39 8.33 21.65 0.18 -44.21 16 9 Si 0.97 36.75 29.56 68.60 2.03 38.77 16 10 H -0.25 -8.35 7.11 99.48 0.71 -7.64 16 11 H -0.30 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 13 S 2.68 109.53 5.11 -56.49 -0.29 109.24 16 14 O -1.00 -44.99 16.00 -128.00 -2.05 -47.04 16 15 O -0.97 -42.70 14.63 -128.00 -1.87 -44.57 16 16 C -0.69 -22.20 5.91 22.27 0.13 -22.07 16 17 C 0.03 1.00 9.06 22.27 0.20 1.20 16 18 C -0.09 -2.47 6.85 36.37 0.25 -2.22 16 19 N 0.03 1.02 4.45 -46.46 -0.21 0.82 16 20 O -0.14 -3.79 18.45 18.89 0.35 -3.44 16 21 O -0.21 -7.14 18.45 18.88 0.35 -6.79 16 22 C 0.01 0.09 9.56 22.27 0.21 0.31 16 23 C -0.12 -2.12 9.70 22.27 0.22 -1.90 16 24 C 0.08 2.06 5.87 -19.86 -0.12 1.94 16 25 C -0.20 -4.83 7.79 71.24 0.55 -4.28 16 26 H 0.23 8.07 7.80 -4.42 -0.03 8.03 16 27 H 0.07 2.71 7.71 -2.39 -0.02 2.69 16 28 H 0.11 5.16 6.36 -2.39 -0.02 5.15 16 29 H 0.26 12.58 8.31 -92.71 -0.77 11.81 16 30 H 0.16 5.16 6.89 -2.91 -0.02 5.14 16 31 H 0.19 2.23 7.61 -2.91 -0.02 2.21 16 32 H 0.20 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.12 3.07 6.59 -2.39 -0.02 3.05 16 34 H 0.12 1.97 8.09 -2.38 -0.02 1.95 16 35 H 0.09 2.96 3.52 -2.39 -0.01 2.95 16 Total: -1.00 -64.31 317.36 3.38 -60.93 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.16 Total: 21.00 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 4.74 Total: -46.45 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -1.04 Total: -81.65 kcal Atomic # 8 Polarization: -98.62 SS G_CDS: -3.22 Total: -101.84 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 109.53 SS G_CDS: -0.29 Total: 109.24 kcal Total: -64.31 3.38 -60.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394303743.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.489 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds