Wall clock time and date at job start Tue Mar 31 2020 14:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47338 * 270.00039 * 3 2 1 5 5 H 1.48502 * 109.47232 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00161 * 3 2 1 7 7 C 1.38807 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 190.74642 * 7 2 1 9 9 N 1.36937 * 119.99938 * 10.74293 * 7 2 1 10 10 C 1.46498 * 120.00088 * 43.31925 * 9 7 2 11 11 C 1.50696 * 109.47020 * 96.34317 * 10 9 7 12 12 C 1.38628 * 120.42309 * 97.79258 * 11 10 9 13 13 C 1.38657 * 118.42896 * 179.71043 * 12 11 10 14 14 C 1.38198 * 119.18694 * 0.57779 * 13 12 11 15 15 N 1.31871 * 120.77601 * 359.68145 * 14 13 12 16 16 C 1.31959 * 121.71100 * 0.02562 * 15 14 13 17 17 Br 1.89100 * 119.62897 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99927 * 223.31918 * 9 7 2 19 19 C 1.54261 * 110.03369 * 54.37629 * 18 9 7 20 20 C 1.54971 * 104.16000 * 217.13745 * 19 18 9 21 21 C 1.54891 * 102.77770 * 37.88815 * 20 19 18 22 22 C 1.53882 * 110.03046 * 297.15773 * 18 9 7 23 23 H 0.97005 * 119.99748 * 4.99264 * 1 2 3 24 24 H 1.08998 * 109.46691 * 336.34119 * 10 9 7 25 25 H 1.08997 * 109.46955 * 216.34780 * 10 9 7 26 26 H 1.07995 * 120.78323 * 359.97438 * 12 11 10 27 27 H 1.08001 * 120.40643 * 180.25807 * 13 12 11 28 28 H 1.08004 * 119.61165 * 179.69755 * 14 13 12 29 29 H 1.08997 * 110.01908 * 175.77034 * 18 9 7 30 30 H 1.09006 * 110.48813 * 335.78276 * 19 18 9 31 31 H 1.08997 * 110.48859 * 98.42841 * 19 18 9 32 32 H 1.08998 * 110.71747 * 279.57461 * 20 19 18 33 33 H 1.08993 * 110.91986 * 156.29579 * 20 19 18 34 34 H 1.08998 * 110.48483 * 203.40864 * 21 20 19 35 35 H 1.09000 * 110.59681 * 80.81444 * 21 20 19 36 36 H 1.08998 * 110.02877 * 238.56732 * 22 18 9 37 37 H 1.09000 * 110.03162 * 359.95520 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0760 -1.2104 0.1739 9 7 1.3435 -2.3775 -0.2221 10 6 0.3351 -2.4592 -1.2816 11 6 0.9609 -3.0302 -2.5279 12 6 0.8239 -4.3765 -2.8286 13 6 1.4116 -4.8567 -3.9891 14 6 2.1197 -3.9864 -4.7959 15 7 2.2345 -2.7122 -4.4764 16 6 1.6840 -2.2188 -3.3833 17 35 1.8852 -0.3818 -2.9825 18 6 1.6388 -3.5534 0.6003 19 6 1.4859 -3.2046 2.0952 20 6 2.6222 -3.9988 2.7879 21 6 3.7875 -3.8843 1.7740 22 6 3.1014 -3.9857 0.3960 23 1 -0.4850 0.8369 -0.0731 24 1 -0.0513 -1.4621 -1.4930 25 1 -0.4816 -3.1039 -0.9569 26 1 0.2690 -5.0348 -2.1767 27 1 1.3214 -5.8992 -4.2564 28 1 2.5844 -4.3542 -5.6989 29 1 0.9676 -4.3709 0.3371 30 1 1.6180 -2.1341 2.2527 31 1 0.5130 -3.5283 2.4649 32 1 2.3340 -5.0404 2.9291 33 1 2.8921 -3.5417 3.7398 34 1 4.4933 -4.7036 1.9100 35 1 4.2937 -2.9246 1.8783 36 1 3.1400 -5.0133 0.0345 37 1 3.5913 -3.3211 -0.3156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876756428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:46 Heat of formation + Delta-G solvation = 51.445605 kcal Electronic energy + Delta-G solvation = -20555.431392 eV Core-core repulsion = 17572.164369 eV Total energy + Delta-G solvation = -2983.267023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 324.053 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64846 -37.69588 -34.66338 -32.33006 -31.84364 -30.69504 -29.01890 -27.84945 -26.82351 -25.71514 -23.06464 -22.62489 -20.93740 -19.91284 -19.08449 -16.67473 -16.16614 -15.98322 -15.42385 -14.71858 -14.37160 -14.16137 -13.93811 -13.16984 -12.95160 -12.86446 -12.64706 -12.55681 -11.84019 -11.21346 -11.07736 -10.87223 -10.66186 -10.46577 -10.40071 -10.27992 -10.24141 -10.10159 -9.96802 -9.90421 -9.52736 -9.19614 -9.07563 -9.04430 -8.27080 -8.04519 -6.53281 -5.76868 -3.40812 1.46700 1.72967 2.33616 3.28943 3.40512 3.44149 4.16276 4.46257 4.98454 5.19356 5.32758 5.36117 5.42840 5.44135 5.47211 5.62114 5.72419 5.77153 6.10549 6.18473 6.27049 6.29861 6.34236 6.43511 6.52617 6.54992 6.59399 6.64438 6.84248 6.92612 6.95244 7.04188 7.20839 7.38051 7.57289 7.86463 8.26084 8.57207 9.18831 9.77816 10.37485 11.21709 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.009770 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.640029 B = 2865.322405 C = 4536.397146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.037 3.963 3 Si 0.868 3.132 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.239 4.239 8 H 0.058 0.942 9 N -0.561 5.561 10 C 0.170 3.830 11 C -0.094 4.094 12 C -0.082 4.082 13 C -0.168 4.168 14 C 0.074 3.926 15 N -0.472 5.472 16 C 0.127 3.873 17 Br 0.018 6.982 18 C 0.174 3.826 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.134 4.134 23 H 0.255 0.745 24 H 0.121 0.879 25 H 0.036 0.964 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -7.454 -3.942 8.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.164 4.164 3 Si 0.697 3.303 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.075 0.925 9 N -0.278 5.278 10 C 0.044 3.956 11 C -0.102 4.102 12 C -0.110 4.110 13 C -0.189 4.189 14 C -0.085 4.085 15 N -0.182 5.182 16 C -0.090 4.090 17 Br 0.102 6.898 18 C 0.066 3.934 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.174 4.174 23 H 0.065 0.935 24 H 0.138 0.862 25 H 0.054 0.946 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.003 -6.028 -4.216 7.624 hybrid contribution 0.126 -0.258 0.210 0.356 sum 2.129 -6.286 -4.006 7.753 Atomic orbital electron populations 1.69850 1.05196 1.25808 1.51469 1.25094 0.94832 0.97689 0.98756 0.86772 0.80190 0.85142 0.78171 1.20838 1.21474 1.19842 1.18733 0.90605 0.83528 1.44030 0.92481 1.43749 1.45364 1.07716 1.31006 1.20193 0.90042 1.02585 0.82813 1.22259 0.96562 0.93445 0.97919 1.21471 0.98387 0.94924 0.96226 1.22056 0.99753 1.00725 0.96340 1.22488 0.97921 0.88653 0.99441 1.67451 1.18792 1.15099 1.16872 1.23034 0.98208 0.94926 0.92868 1.96879 1.96522 1.03686 1.92735 1.21047 0.92734 0.89165 0.90405 1.22719 0.95850 1.01994 0.95890 1.22448 0.96817 0.99207 0.97689 1.22235 0.97002 1.00435 0.95749 1.22624 0.98789 0.99234 0.96709 0.93501 0.86172 0.94580 0.85233 0.85473 0.83338 0.93643 0.89354 0.93558 0.92955 0.92827 0.93544 0.91975 0.94078 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.05 11.34 55.49 0.63 -22.42 16 2 C 0.04 0.93 3.42 -17.43 -0.06 0.87 16 3 Si 0.87 20.58 28.09 -169.99 -4.77 15.81 16 4 H -0.28 -6.59 6.89 56.52 0.39 -6.20 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.24 -5.85 5.87 -15.06 -0.09 -5.93 16 8 H 0.06 1.48 7.36 -52.49 -0.39 1.09 16 9 N -0.56 -12.52 2.31 -165.76 -0.38 -12.91 16 10 C 0.17 3.70 4.80 -5.20 -0.02 3.68 16 11 C -0.09 -1.86 5.47 -104.45 -0.57 -2.43 16 12 C -0.08 -1.35 9.83 -39.28 -0.39 -1.74 16 13 C -0.17 -2.41 10.11 -39.44 -0.40 -2.81 16 14 C 0.07 1.16 11.18 -17.55 -0.20 0.97 16 15 N -0.47 -9.13 10.32 -11.64 -0.12 -9.25 16 16 C 0.13 2.63 7.16 -17.47 -0.13 2.51 16 17 Br 0.02 0.38 26.78 -68.01 -1.82 -1.44 16 18 C 0.17 3.40 3.42 -66.81 -0.23 3.17 16 19 C -0.13 -2.39 6.41 -25.03 -0.16 -2.55 16 20 C -0.12 -1.97 6.91 -24.69 -0.17 -2.14 16 21 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 22 C -0.13 -2.45 6.24 -25.61 -0.16 -2.61 16 23 H 0.25 6.60 8.32 -40.82 -0.34 6.26 16 24 H 0.12 2.93 4.58 -51.93 -0.24 2.69 16 25 H 0.04 0.75 7.94 -51.93 -0.41 0.34 16 26 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 29 H 0.05 0.85 7.89 -51.93 -0.41 0.44 16 30 H 0.09 1.97 6.90 -51.93 -0.36 1.61 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.42 7.20 -51.93 -0.37 1.04 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -26.31 310.80 -9.66 -35.97 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.13 Total: 0.67 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.74 Total: -11.12 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.13 Total: -44.58 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.77 Total: 15.81 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -1.82 Total: -1.44 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.31 -9.66 -35.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876756428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.417 kcal (2) G-P(sol) polarization free energy of solvation -26.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds