Wall clock time and date at job start Tue Mar 31 2020 14:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99983 * 2 1 4 4 H 1.48501 * 109.47338 * 270.00039 * 3 2 1 5 5 H 1.48502 * 109.47232 * 30.00092 * 3 2 1 6 6 H 1.48503 * 109.47104 * 150.00161 * 3 2 1 7 7 C 1.38807 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 190.74642 * 7 2 1 9 9 N 1.36937 * 119.99938 * 10.74293 * 7 2 1 10 10 C 1.46498 * 120.00088 * 43.31925 * 9 7 2 11 11 C 1.50696 * 109.47020 * 96.34317 * 10 9 7 12 12 C 1.38628 * 120.42309 * 97.79258 * 11 10 9 13 13 C 1.38657 * 118.42896 * 179.71043 * 12 11 10 14 14 C 1.38198 * 119.18694 * 0.57779 * 13 12 11 15 15 N 1.31871 * 120.77601 * 359.68145 * 14 13 12 16 16 C 1.31959 * 121.71100 * 0.02562 * 15 14 13 17 17 Br 1.89100 * 119.62897 * 180.02562 * 16 15 14 18 18 C 1.46504 * 119.99927 * 223.31918 * 9 7 2 19 19 C 1.54261 * 110.03369 * 54.37629 * 18 9 7 20 20 C 1.54971 * 104.16000 * 217.13745 * 19 18 9 21 21 C 1.54891 * 102.77770 * 37.88815 * 20 19 18 22 22 C 1.53882 * 110.03046 * 297.15773 * 18 9 7 23 23 H 0.97005 * 119.99748 * 4.99264 * 1 2 3 24 24 H 1.08998 * 109.46691 * 336.34119 * 10 9 7 25 25 H 1.08997 * 109.46955 * 216.34780 * 10 9 7 26 26 H 1.07995 * 120.78323 * 359.97438 * 12 11 10 27 27 H 1.08001 * 120.40643 * 180.25807 * 13 12 11 28 28 H 1.08004 * 119.61165 * 179.69755 * 14 13 12 29 29 H 1.08997 * 110.01908 * 175.77034 * 18 9 7 30 30 H 1.09006 * 110.48813 * 335.78276 * 19 18 9 31 31 H 1.08997 * 110.48859 * 98.42841 * 19 18 9 32 32 H 1.08998 * 110.71747 * 279.57461 * 20 19 18 33 33 H 1.08993 * 110.91986 * 156.29579 * 20 19 18 34 34 H 1.08998 * 110.48483 * 203.40864 * 21 20 19 35 35 H 1.09000 * 110.59681 * 80.81444 * 21 20 19 36 36 H 1.08998 * 110.02877 * 238.56732 * 22 18 9 37 37 H 1.09000 * 110.03162 * 359.95520 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0760 -1.2104 0.1739 9 7 1.3435 -2.3775 -0.2221 10 6 0.3351 -2.4592 -1.2816 11 6 0.9609 -3.0302 -2.5279 12 6 0.8239 -4.3765 -2.8286 13 6 1.4116 -4.8567 -3.9891 14 6 2.1197 -3.9864 -4.7959 15 7 2.2345 -2.7122 -4.4764 16 6 1.6840 -2.2188 -3.3833 17 35 1.8852 -0.3818 -2.9825 18 6 1.6388 -3.5534 0.6003 19 6 1.4859 -3.2046 2.0952 20 6 2.6222 -3.9988 2.7879 21 6 3.7875 -3.8843 1.7740 22 6 3.1014 -3.9857 0.3960 23 1 -0.4850 0.8369 -0.0731 24 1 -0.0513 -1.4621 -1.4930 25 1 -0.4816 -3.1039 -0.9569 26 1 0.2690 -5.0348 -2.1767 27 1 1.3214 -5.8992 -4.2564 28 1 2.5844 -4.3542 -5.6989 29 1 0.9676 -4.3709 0.3371 30 1 1.6180 -2.1341 2.2527 31 1 0.5130 -3.5283 2.4649 32 1 2.3340 -5.0404 2.9291 33 1 2.8921 -3.5417 3.7398 34 1 4.4933 -4.7036 1.9100 35 1 4.2937 -2.9246 1.8783 36 1 3.1400 -5.0133 0.0345 37 1 3.5913 -3.3211 -0.3156 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876756428.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:45 Heat of formation + Delta-G solvation = 38.158170 kcal Electronic energy + Delta-G solvation = -20556.007578 eV Core-core repulsion = 17572.164369 eV Total energy + Delta-G solvation = -2983.843209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 324.053 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.02608 -39.21286 -36.25875 -33.88184 -33.32097 -32.34584 -30.50568 -29.29388 -28.32340 -27.43721 -24.63763 -24.02268 -22.43067 -21.27957 -20.70624 -18.28155 -17.61008 -17.44653 -16.97828 -16.33830 -15.89198 -15.68043 -15.46061 -14.63441 -14.58687 -14.34900 -14.02323 -13.93743 -13.44650 -12.90547 -12.89291 -12.63082 -12.21592 -12.10443 -11.88245 -11.86209 -11.75377 -11.68543 -11.54024 -11.31122 -11.10889 -10.83854 -10.53404 -10.46762 -10.03793 -9.54622 -8.35363 -7.66277 -5.32625 0.12657 0.40690 0.82091 1.36035 1.45852 1.48029 2.53310 2.83578 3.44383 3.72769 3.78629 4.00827 4.03815 4.05476 4.18570 4.27017 4.36994 4.50106 4.72432 4.75241 4.81655 4.94192 4.98300 5.02216 5.04743 5.22257 5.22837 5.28719 5.35984 5.41374 5.56235 5.68368 5.74392 5.78583 5.83282 5.92721 6.66372 6.91892 7.34000 7.97958 8.52167 9.27341 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.009770 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.640029 B = 2865.322405 C = 4536.397146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.219 4.219 8 H 0.037 0.963 9 N -0.572 5.572 10 C 0.175 3.825 11 C -0.112 4.112 12 C -0.079 4.079 13 C -0.147 4.147 14 C 0.076 3.924 15 N -0.498 5.498 16 C 0.103 3.897 17 Br -0.016 7.016 18 C 0.167 3.833 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.114 4.114 22 C -0.125 4.125 23 H 0.247 0.753 24 H 0.092 0.908 25 H 0.040 0.960 26 H 0.155 0.845 27 H 0.178 0.822 28 H 0.189 0.811 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -11.266 -4.597 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.185 4.185 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.350 4.350 8 H 0.055 0.945 9 N -0.290 5.290 10 C 0.048 3.952 11 C -0.119 4.119 12 C -0.107 4.107 13 C -0.166 4.166 14 C -0.083 4.083 15 N -0.208 5.208 16 C -0.112 4.112 17 Br 0.068 6.932 18 C 0.061 3.939 19 C -0.165 4.165 20 C -0.149 4.149 21 C -0.152 4.152 22 C -0.164 4.164 23 H 0.057 0.943 24 H 0.110 0.890 25 H 0.058 0.942 26 H 0.173 0.827 27 H 0.196 0.804 28 H 0.206 0.794 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.497 -9.845 -4.878 11.267 hybrid contribution -0.004 0.722 0.275 0.773 sum 2.493 -9.123 -4.602 10.518 Atomic orbital electron populations 1.69924 1.05707 1.25319 1.53757 1.25258 0.94976 0.98638 0.99674 0.86406 0.79435 0.84100 0.77993 1.20705 1.22272 1.20095 1.18499 0.89610 0.84533 1.42364 0.94525 1.43844 1.45057 1.07850 1.32294 1.19953 0.90064 1.01366 0.83809 1.22034 0.97365 0.95058 0.97458 1.21811 0.98072 0.93468 0.97332 1.22551 0.96951 1.02805 0.94318 1.23287 0.97032 0.87388 1.00607 1.67403 1.19573 1.17287 1.16583 1.22860 1.00152 0.93846 0.94362 1.96815 1.96724 1.06565 1.93108 1.21239 0.93940 0.88540 0.90181 1.22634 0.97491 0.99991 0.96348 1.22393 0.94910 1.00186 0.97447 1.22217 0.97557 1.00549 0.94839 1.22493 0.97472 0.99497 0.96972 0.94298 0.89041 0.94207 0.82703 0.80440 0.79423 0.92150 0.93385 0.93193 0.90259 0.91961 0.90682 0.93962 0.91843 0.94717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.17 11.34 21.65 0.25 -48.92 16 2 C 0.01 0.67 3.42 84.86 0.29 0.96 16 3 Si 0.89 43.59 28.09 68.60 1.93 45.51 16 4 H -0.28 -13.52 6.89 99.48 0.69 -12.84 16 5 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 6 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 7 C -0.22 -11.09 5.87 84.03 0.49 -10.59 16 8 H 0.04 2.00 7.36 -2.91 -0.02 1.97 16 9 N -0.57 -25.80 2.31 -678.33 -1.57 -27.37 16 10 C 0.17 7.64 4.80 85.63 0.41 8.05 16 11 C -0.11 -4.30 5.47 -19.76 -0.11 -4.41 16 12 C -0.08 -2.31 9.83 22.46 0.22 -2.09 16 13 C -0.15 -3.42 10.11 22.36 0.23 -3.19 16 14 C 0.08 2.08 11.18 84.68 0.95 3.03 16 15 N -0.50 -18.46 10.32 -190.75 -1.97 -20.43 16 16 C 0.10 4.26 7.16 84.69 0.61 4.86 16 17 Br -0.02 -0.73 26.78 -20.37 -0.55 -1.28 16 18 C 0.17 6.36 3.42 45.72 0.16 6.52 16 19 C -0.13 -4.69 6.41 31.70 0.20 -4.49 16 20 C -0.11 -3.28 6.91 31.91 0.22 -3.05 16 21 C -0.11 -3.52 6.83 31.67 0.22 -3.30 16 22 C -0.12 -4.34 6.24 31.32 0.20 -4.15 16 23 H 0.25 13.42 8.32 -92.70 -0.77 12.65 16 24 H 0.09 4.60 4.58 -2.39 -0.01 4.59 16 25 H 0.04 1.65 7.94 -2.39 -0.02 1.63 16 26 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 27 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.06 2.10 7.89 -2.39 -0.02 2.08 16 30 H 0.05 2.18 6.90 -2.38 -0.02 2.17 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 Total: -1.00 -60.37 310.80 3.21 -57.16 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: 1.04 Total: 7.18 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.08 Total: -11.86 kcal Atomic # 7 Polarization: -93.43 SS G_CDS: -3.29 Total: -96.72 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.93 Total: 45.51 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -0.55 Total: -1.28 kcal Total: -60.37 3.21 -57.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876756428.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.317 kcal (2) G-P(sol) polarization free energy of solvation -60.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds