Wall clock time and date at job start Tue Mar 31 2020 14:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35617 * 117.00066 * 2 1 4 4 C 1.39138 * 119.88295 * 0.25663 * 3 2 1 5 5 C 1.36424 * 120.43559 * 180.26139 * 4 3 2 6 6 C 1.40906 * 120.18971 * 359.75523 * 5 4 3 7 7 C 1.41245 * 120.12089 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99716 * 24.58620 * 7 6 5 9 9 C 1.39861 * 119.99896 * 204.58778 * 7 6 5 10 10 N 1.30890 * 120.00165 * 17.95247 * 9 7 6 11 11 Si 1.86801 * 119.99407 * 197.95953 * 9 7 6 12 12 H 1.48495 * 109.47420 * 89.99794 * 11 9 7 13 13 H 1.48508 * 109.46884 * 209.99800 * 11 9 7 14 14 H 1.48500 * 109.47278 * 329.99165 * 11 9 7 15 15 C 1.40619 * 119.76286 * 359.97438 * 6 5 4 16 16 C 1.38593 * 119.57002 * 359.97438 * 15 6 5 17 17 C 1.48318 * 120.09716 * 180.02562 * 16 15 6 18 18 C 1.39383 * 120.09982 * 64.71949 * 17 16 15 19 19 C 1.37974 * 119.95817 * 180.23286 * 18 17 16 20 20 C 1.38523 * 120.15060 * 0.06946 * 19 18 17 21 21 F 1.35099 * 119.90735 * 179.97438 * 20 19 18 22 22 C 1.38703 * 120.19171 * 359.95495 * 20 19 18 23 23 F 1.35103 * 119.98152 * 180.02562 * 22 20 19 24 24 C 1.38306 * 120.03838 * 359.97438 * 22 20 19 25 25 Cl 1.73609 * 120.07038 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.46739 * 60.00126 * 1 2 3 27 27 H 1.08989 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47137 * 300.00496 * 1 2 3 29 29 H 1.07998 * 119.78135 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90421 * 179.74060 * 5 4 3 31 31 H 0.96997 * 119.99822 * 179.97438 * 10 9 7 32 32 H 1.07998 * 120.21583 * 180.02562 * 15 6 5 33 33 H 1.08006 * 120.01956 * 0.26097 * 18 17 16 34 34 H 1.07999 * 119.92440 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2846 2.3737 0.0054 5 6 1.8922 3.5952 0.0001 6 6 3.2982 3.6871 -0.0057 7 6 3.9258 4.9525 -0.0107 8 1 3.4052 5.8149 0.3789 9 6 5.2211 5.0887 -0.5201 10 7 5.7192 4.1615 -1.2982 11 14 6.2404 6.5938 -0.0898 12 1 7.0212 6.3265 1.1447 13 1 7.1700 6.8980 -1.2073 14 1 5.3405 7.7534 0.1349 15 6 4.0745 2.5146 -0.0055 16 6 3.4469 1.2789 0.0010 17 6 4.2542 0.0347 0.0019 18 6 5.0710 -0.2678 1.0900 19 6 5.8245 -1.4236 1.0857 20 6 5.7724 -2.2840 0.0013 21 9 6.5126 -3.4142 0.0020 22 6 4.9621 -1.9889 -1.0850 23 9 4.9142 -2.8313 -2.1402 24 6 4.2024 -0.8331 -1.0884 25 17 3.1875 -0.4632 -2.4474 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2064 2.3109 0.0092 30 1 1.2937 4.4942 0.0001 31 1 6.6175 4.2561 -1.6518 32 1 5.1527 2.5766 -0.0095 33 1 5.1137 0.4019 1.9363 34 1 6.4568 -1.6577 1.9293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205676054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:25 Heat of formation + Delta-G solvation = -89.200877 kcal Electronic energy + Delta-G solvation = -24629.354280 eV Core-core repulsion = 20575.202693 eV Total energy + Delta-G solvation = -4054.151587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.31190 -48.38453 -39.39639 -38.19841 -36.39681 -36.04427 -33.48658 -31.85720 -30.43175 -29.21058 -28.25104 -26.89118 -24.73492 -23.14115 -22.90364 -20.82790 -20.36809 -18.02948 -17.43961 -17.06951 -16.93891 -16.53912 -16.20294 -15.35922 -14.96637 -14.88167 -14.82549 -14.61856 -14.36658 -14.09888 -13.43941 -13.17471 -12.98638 -12.90348 -12.36359 -12.07917 -12.01112 -11.61097 -11.42886 -11.29470 -11.13896 -11.00919 -10.85530 -10.72780 -10.49095 -10.06663 -9.94728 -9.59865 -9.13249 -8.59862 -8.51687 -7.63194 -7.12763 -6.80450 -4.34936 1.04021 1.07092 2.36929 2.56530 2.74461 3.05113 3.07685 3.11731 3.52370 3.89372 3.91837 4.24226 4.43408 4.49772 4.80906 4.92872 5.15363 5.47623 5.58509 5.60635 5.67017 5.78608 5.84276 6.01468 6.05161 6.13241 6.36277 6.47589 6.80236 6.83646 6.94974 7.06941 7.24536 7.32721 7.62303 7.81995 8.03346 8.32852 8.50382 8.78915 8.83332 10.13971 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005192 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.328019 B = 5391.314170 C = 6657.854253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.028 3.972 4 C -0.170 4.170 5 C -0.180 4.180 6 C 0.085 3.915 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.795 5.795 11 Si 0.906 3.094 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.106 4.106 16 C -0.079 4.079 17 C 0.034 3.966 18 C -0.084 4.084 19 C -0.124 4.124 20 C 0.058 3.942 21 F -0.131 7.131 22 C 0.069 3.931 23 F -0.124 7.124 24 C -0.031 4.031 25 Cl -0.026 7.026 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.131 0.869 33 H 0.149 0.851 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.535 -7.905 3.089 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.237 6.237 3 C -0.016 4.016 4 C -0.189 4.189 5 C -0.200 4.200 6 C 0.083 3.917 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.421 5.421 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.187 1.187 15 C -0.125 4.125 16 C -0.080 4.080 17 C 0.032 3.968 18 C -0.102 4.102 19 C -0.143 4.143 20 C 0.038 3.962 21 F -0.110 7.110 22 C 0.048 3.952 23 F -0.102 7.102 24 C -0.059 4.059 25 Cl 0.004 6.996 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.306 -8.182 2.760 8.733 hybrid contribution 0.257 0.510 -0.344 0.667 sum -1.049 -7.671 2.417 8.111 Atomic orbital electron populations 1.22713 0.80925 1.01818 1.00283 1.85878 1.19086 1.28081 1.90660 1.18391 0.90327 0.83269 1.09569 1.20346 0.97545 0.92730 1.08249 1.20670 0.94829 0.95214 1.09264 1.17456 0.90521 0.93213 0.90501 1.19437 0.98623 0.94908 1.36242 0.90382 1.25853 0.97993 0.97725 0.92585 1.69816 1.16487 1.33640 1.22196 0.86343 0.79760 0.81810 0.79027 1.19283 1.20366 1.18693 1.21254 0.99967 0.88868 1.02398 1.17582 0.88790 0.91084 1.10533 1.18724 0.94213 0.93273 0.90541 1.21214 0.94718 0.95972 0.98288 1.21009 1.01408 0.94362 0.97474 1.17397 0.96560 0.86481 0.95758 1.91497 1.74622 1.48188 1.96703 1.17207 1.01383 0.90548 0.86079 1.91517 1.95334 1.69239 1.54150 1.20854 0.97431 0.94666 0.92973 1.98382 1.66023 1.94005 1.41217 0.93898 0.90032 0.93914 0.88258 0.88479 0.90768 0.85165 0.83373 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.32 -6.08 8.84 -18.55 -0.16 -6.24 16 3 C 0.03 0.59 5.96 -38.44 -0.23 0.36 16 4 C -0.17 -3.52 8.95 -39.90 -0.36 -3.88 16 5 C -0.18 -4.06 9.72 -39.23 -0.38 -4.44 16 6 C 0.09 2.09 5.57 -106.85 -0.60 1.50 16 7 C -0.46 -11.44 9.04 -37.83 -0.34 -11.78 16 8 H 0.08 1.87 7.91 -52.49 -0.41 1.45 16 9 C 0.08 1.79 5.13 -17.35 -0.09 1.71 16 10 N -0.80 -19.53 10.96 55.54 0.61 -18.92 16 11 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 13 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 14 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 15 C -0.11 -2.49 8.36 -38.55 -0.32 -2.81 16 16 C -0.08 -1.70 4.68 -104.81 -0.49 -2.19 16 17 C 0.03 0.64 4.94 -104.87 -0.52 0.12 16 18 C -0.08 -1.32 9.72 -39.25 -0.38 -1.70 16 19 C -0.12 -1.71 10.01 -39.57 -0.40 -2.11 16 20 C 0.06 0.91 7.31 -39.30 -0.29 0.62 16 21 F -0.13 -2.00 17.17 2.25 0.04 -1.96 16 22 C 0.07 1.20 7.27 -39.38 -0.29 0.91 16 23 F -0.12 -2.16 16.74 2.25 0.04 -2.12 16 24 C -0.03 -0.59 6.07 -39.11 -0.24 -0.83 16 25 Cl -0.03 -0.49 26.23 -51.86 -1.36 -1.85 16 26 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 27 H 0.08 0.98 8.14 -51.94 -0.42 0.56 16 28 H 0.04 0.58 7.64 -51.93 -0.40 0.18 16 29 H 0.10 1.79 6.26 -52.49 -0.33 1.46 16 30 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.13 3.19 6.16 -52.49 -0.32 2.86 16 33 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 34 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -26.18 319.64 -7.66 -33.84 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -2.69 Total: 2.59 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -3.92 Total: -22.95 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.16 Total: -6.24 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.36 Total: -1.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.18 -7.66 -33.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205676054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.358 kcal (2) G-P(sol) polarization free energy of solvation -26.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds