Wall clock time and date at job start Tue Mar 31 2020 14:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35617 * 117.00066 * 2 1 4 4 C 1.39138 * 119.88295 * 0.25663 * 3 2 1 5 5 C 1.36424 * 120.43559 * 180.26139 * 4 3 2 6 6 C 1.40906 * 120.18971 * 359.75523 * 5 4 3 7 7 C 1.41245 * 120.12089 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99716 * 24.58620 * 7 6 5 9 9 C 1.39861 * 119.99896 * 204.58778 * 7 6 5 10 10 N 1.30890 * 120.00165 * 17.95247 * 9 7 6 11 11 Si 1.86801 * 119.99407 * 197.95953 * 9 7 6 12 12 H 1.48495 * 109.47420 * 89.99794 * 11 9 7 13 13 H 1.48508 * 109.46884 * 209.99800 * 11 9 7 14 14 H 1.48500 * 109.47278 * 329.99165 * 11 9 7 15 15 C 1.40619 * 119.76286 * 359.97438 * 6 5 4 16 16 C 1.38593 * 119.57002 * 359.97438 * 15 6 5 17 17 C 1.48318 * 120.09716 * 180.02562 * 16 15 6 18 18 C 1.39383 * 120.09982 * 64.71949 * 17 16 15 19 19 C 1.37974 * 119.95817 * 180.23286 * 18 17 16 20 20 C 1.38523 * 120.15060 * 0.06946 * 19 18 17 21 21 F 1.35099 * 119.90735 * 179.97438 * 20 19 18 22 22 C 1.38703 * 120.19171 * 359.95495 * 20 19 18 23 23 F 1.35103 * 119.98152 * 180.02562 * 22 20 19 24 24 C 1.38306 * 120.03838 * 359.97438 * 22 20 19 25 25 Cl 1.73609 * 120.07038 * 180.02562 * 24 22 20 26 26 H 1.09004 * 109.46739 * 60.00126 * 1 2 3 27 27 H 1.08989 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47137 * 300.00496 * 1 2 3 29 29 H 1.07998 * 119.78135 * 359.97438 * 4 3 2 30 30 H 1.08003 * 119.90421 * 179.74060 * 5 4 3 31 31 H 0.96997 * 119.99822 * 179.97438 * 10 9 7 32 32 H 1.07998 * 120.21583 * 180.02562 * 15 6 5 33 33 H 1.08006 * 120.01956 * 0.26097 * 18 17 16 34 34 H 1.07999 * 119.92440 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2846 2.3737 0.0054 5 6 1.8922 3.5952 0.0001 6 6 3.2982 3.6871 -0.0057 7 6 3.9258 4.9525 -0.0107 8 1 3.4052 5.8149 0.3789 9 6 5.2211 5.0887 -0.5201 10 7 5.7192 4.1615 -1.2982 11 14 6.2404 6.5938 -0.0898 12 1 7.0212 6.3265 1.1447 13 1 7.1700 6.8980 -1.2073 14 1 5.3405 7.7534 0.1349 15 6 4.0745 2.5146 -0.0055 16 6 3.4469 1.2789 0.0010 17 6 4.2542 0.0347 0.0019 18 6 5.0710 -0.2678 1.0900 19 6 5.8245 -1.4236 1.0857 20 6 5.7724 -2.2840 0.0013 21 9 6.5126 -3.4142 0.0020 22 6 4.9621 -1.9889 -1.0850 23 9 4.9142 -2.8313 -2.1402 24 6 4.2024 -0.8331 -1.0884 25 17 3.1875 -0.4632 -2.4474 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.2064 2.3109 0.0092 30 1 1.2937 4.4942 0.0001 31 1 6.6175 4.2561 -1.6518 32 1 5.1527 2.5766 -0.0095 33 1 5.1137 0.4019 1.9363 34 1 6.4568 -1.6577 1.9293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205676054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:24 Heat of formation + Delta-G solvation = -99.987945 kcal Electronic energy + Delta-G solvation = -24629.822042 eV Core-core repulsion = 20575.202693 eV Total energy + Delta-G solvation = -4054.619349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.60586 -49.67776 -40.88762 -39.59745 -38.01287 -37.47467 -35.19795 -33.36904 -31.73139 -30.92508 -29.70842 -28.27235 -26.40578 -24.55536 -24.22078 -22.47010 -21.93625 -19.49257 -18.90599 -18.50903 -18.37562 -17.98623 -17.51014 -16.99679 -16.48822 -16.25480 -16.11632 -15.97791 -15.81454 -15.35965 -14.94498 -14.73220 -14.41105 -14.34340 -13.87207 -13.67954 -13.43631 -13.17309 -12.85229 -12.73984 -12.60115 -12.41525 -12.32227 -12.29987 -11.97877 -11.68935 -11.55335 -11.23389 -10.84741 -9.93697 -9.91635 -9.27474 -8.82862 -8.53912 -6.17268 -0.29134 -0.22536 0.89050 0.96669 1.05300 1.43715 1.54079 1.54963 2.20619 2.26131 2.59419 2.73788 2.85220 3.19965 3.46089 3.61380 3.74855 3.91225 4.26046 4.33374 4.46265 4.52559 4.56398 4.68301 4.78238 4.82952 4.88945 5.08906 5.15254 5.26451 5.32572 5.51185 5.56754 5.62700 5.90474 6.06195 6.28537 6.60266 6.83574 7.00420 7.11157 8.41137 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.012217 B = 0.005192 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.328019 B = 5391.314170 C = 6657.854253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.331 6.331 3 C 0.038 3.962 4 C -0.173 4.173 5 C -0.192 4.192 6 C 0.054 3.946 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.039 3.961 10 N -0.829 5.829 11 Si 0.973 3.027 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.261 1.261 15 C -0.119 4.119 16 C -0.080 4.080 17 C 0.008 3.992 18 C -0.080 4.080 19 C -0.099 4.099 20 C 0.065 3.935 21 F -0.126 7.126 22 C 0.058 3.942 23 F -0.128 7.128 24 C -0.046 4.046 25 Cl -0.040 7.040 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.103 0.897 31 H 0.285 0.715 32 H 0.115 0.885 33 H 0.165 0.835 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -8.970 4.437 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.246 6.246 3 C -0.007 4.007 4 C -0.192 4.192 5 C -0.212 4.212 6 C 0.052 3.948 7 C -0.527 4.527 8 H 0.092 0.908 9 C -0.175 4.175 10 N -0.456 5.456 11 Si 0.795 3.205 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.185 1.185 15 C -0.139 4.139 16 C -0.081 4.081 17 C 0.006 3.994 18 C -0.098 4.098 19 C -0.117 4.117 20 C 0.045 3.955 21 F -0.104 7.104 22 C 0.037 3.963 23 F -0.106 7.106 24 C -0.073 4.073 25 Cl -0.011 7.011 26 H 0.064 0.936 27 H 0.128 0.872 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.182 0.818 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.072 -9.264 4.111 10.192 hybrid contribution 0.059 0.641 -0.736 0.978 sum -1.013 -8.624 3.375 9.316 Atomic orbital electron populations 1.23046 0.78521 1.04089 1.01023 1.85879 1.21538 1.26896 1.90270 1.18547 0.90489 0.84077 1.07580 1.20628 0.99094 0.92026 1.07411 1.20849 0.94416 0.96375 1.09540 1.17781 0.91640 0.93728 0.91638 1.19636 0.99954 0.95119 1.37947 0.90785 1.26566 0.98526 1.00447 0.91923 1.69884 1.16975 1.35499 1.23215 0.85329 0.78060 0.78265 0.78841 1.18564 1.19958 1.18516 1.21121 0.99251 0.89664 1.03861 1.17736 0.89621 0.91465 1.09291 1.18762 0.95686 0.92825 0.92077 1.21437 0.93814 0.96806 0.97721 1.21381 1.00165 0.92414 0.97749 1.17515 0.95797 0.86710 0.95485 1.91520 1.74323 1.47946 1.96643 1.17332 1.01952 0.90339 0.86701 1.91503 1.95418 1.69216 1.54500 1.20900 0.98222 0.95462 0.92758 1.98365 1.66575 1.94178 1.41994 0.93554 0.87164 0.92636 0.85443 0.87876 0.90415 0.86707 0.81786 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.33 -11.98 8.84 -89.29 -0.79 -12.77 16 3 C 0.04 1.54 5.96 23.01 0.14 1.68 16 4 C -0.17 -7.05 8.95 22.06 0.20 -6.86 16 5 C -0.19 -8.80 9.72 22.50 0.22 -8.58 16 6 C 0.05 2.74 5.57 -21.31 -0.12 2.62 16 7 C -0.50 -25.40 9.04 23.40 0.21 -25.19 16 8 H 0.07 3.68 7.91 -2.91 -0.02 3.65 16 9 C 0.04 1.91 5.13 85.23 0.44 2.35 16 10 N -0.83 -41.89 10.96 21.81 0.24 -41.65 16 11 Si 0.97 37.02 29.60 68.60 2.03 39.05 16 12 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 13 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 15 C -0.12 -5.79 8.36 22.94 0.19 -5.60 16 16 C -0.08 -3.46 4.68 -19.98 -0.09 -3.55 16 17 C 0.01 0.28 4.94 -20.03 -0.10 0.18 16 18 C -0.08 -2.35 9.72 22.48 0.22 -2.13 16 19 C -0.10 -2.39 10.01 22.28 0.22 -2.16 16 20 C 0.07 1.87 7.31 22.45 0.16 2.03 16 21 F -0.13 -3.45 17.17 44.97 0.77 -2.68 16 22 C 0.06 1.94 7.27 22.40 0.16 2.11 16 23 F -0.13 -4.36 16.74 44.97 0.75 -3.61 16 24 C -0.05 -1.69 6.07 22.58 0.14 -1.55 16 25 Cl -0.04 -1.55 26.23 -2.72 -0.07 -1.62 16 26 H 0.05 1.21 7.66 -2.38 -0.02 1.19 16 27 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.35 7.64 -2.39 -0.02 1.33 16 29 H 0.13 4.36 6.26 -2.91 -0.02 4.34 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 32 H 0.12 5.84 6.16 -2.91 -0.02 5.82 16 33 H 0.16 4.28 8.06 -2.91 -0.02 4.25 16 34 H 0.19 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -57.91 319.64 7.20 -50.71 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.17 Total: 15.36 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.10 Total: -42.79 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.24 Total: -41.65 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.79 Total: -12.77 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 1.53 Total: -6.29 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.07 Total: -1.62 kcal Total: -57.91 7.20 -50.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205676054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.274 kcal (2) G-P(sol) polarization free energy of solvation -57.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds