Wall clock time and date at job start Tue Mar 31 2020 14:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 116.99448 * 2 1 4 4 C 1.38765 * 119.92986 * 0.02562 * 3 2 1 5 5 C 1.38142 * 120.05710 * 180.02562 * 4 3 2 6 6 F 1.35098 * 120.04953 * 179.97438 * 5 4 3 7 7 C 1.39611 * 119.90120 * 359.97438 * 5 4 3 8 8 C 1.48333 * 120.06987 * 179.97438 * 7 5 4 9 9 C 1.38686 * 120.01457 * 244.99862 * 8 7 5 10 10 C 1.40542 * 119.65313 * 180.02562 * 9 8 7 11 11 C 1.41345 * 120.15347 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99640 * 204.52126 * 11 10 9 13 13 C 1.39885 * 119.99937 * 24.52178 * 11 10 9 14 14 N 1.30862 * 120.00346 * 17.94639 * 13 11 10 15 15 Si 1.86800 * 119.99736 * 197.94964 * 13 11 10 16 16 H 1.48497 * 109.47311 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47433 * 119.99931 * 15 13 11 18 18 H 1.48498 * 109.47150 * 239.99910 * 15 13 11 19 19 C 1.40860 * 119.69329 * 359.97438 * 10 9 8 20 20 C 1.37573 * 120.02085 * 0.02562 * 19 10 9 21 21 C 1.38743 * 120.35302 * 0.27332 * 20 19 10 22 22 F 1.35101 * 119.84482 * 179.72393 * 21 20 19 23 23 C 1.39341 * 119.84934 * 0.24954 * 7 5 4 24 24 C 1.38016 * 119.94654 * 359.49425 * 23 7 5 25 25 Cl 1.73608 * 119.95317 * 180.23034 * 24 23 7 26 26 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46815 * 299.99543 * 1 2 3 28 28 H 1.08995 * 109.47743 * 59.99990 * 1 2 3 29 29 H 1.08003 * 119.97389 * 359.97438 * 4 3 2 30 30 H 1.08002 * 120.17416 * 0.02562 * 9 8 7 31 31 H 0.97005 * 120.00105 * 180.02562 * 14 13 11 32 32 H 1.07988 * 119.98756 * 180.02562 * 19 10 9 33 33 H 1.07997 * 119.82003 * 179.97438 * 20 19 10 34 34 H 1.08003 * 120.02640 * 179.72507 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2886 2.3736 0.0005 5 6 1.9129 3.6060 0.0000 6 9 1.1754 4.7379 0.0000 7 6 3.3070 3.6799 -0.0005 8 6 3.9813 5.0011 -0.0017 9 6 4.7483 5.3876 -1.0906 10 6 5.3842 6.6409 -1.0834 11 6 6.1680 7.0457 -2.1878 12 1 6.9521 7.7764 -2.0545 13 6 5.9282 6.4999 -3.4532 14 7 4.7915 5.9014 -3.7030 15 14 7.2305 6.6252 -4.7865 16 1 8.4161 7.3439 -4.2545 17 1 7.6302 5.2616 -5.2179 18 1 6.6804 7.3702 -5.9473 19 6 5.2360 7.4922 0.0290 20 6 4.4720 7.0956 1.1022 21 6 3.8486 5.8561 1.0993 22 9 3.1054 5.4748 2.1610 23 6 4.0635 2.5097 -0.0058 24 6 3.4333 1.2818 0.0001 25 17 4.3758 -0.1762 -0.0004 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 0.2101 2.3152 0.0005 30 1 4.8564 4.7289 -1.9396 31 1 4.6254 5.5226 -4.5805 32 1 5.7221 8.4564 0.0394 33 1 4.3609 7.7507 1.9536 34 1 5.1422 2.5636 -0.0107 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244352170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:00 Heat of formation + Delta-G solvation = -108.073428 kcal Electronic energy + Delta-G solvation = -24402.488256 eV Core-core repulsion = 20347.518294 eV Total energy + Delta-G solvation = -4054.969962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.07206 -49.31304 -41.26727 -39.52627 -38.32961 -37.40223 -35.51709 -33.18766 -31.74697 -31.29112 -29.82714 -28.07463 -26.97101 -24.30194 -23.94198 -22.95236 -21.95631 -19.74590 -19.26093 -18.29388 -18.09234 -17.52574 -17.26209 -17.03588 -16.85334 -16.46540 -16.20457 -16.02334 -15.62110 -15.37404 -15.26635 -14.68550 -14.29485 -14.18695 -13.84934 -13.79495 -13.65867 -13.20699 -12.88327 -12.79784 -12.62149 -12.50767 -12.48796 -12.20513 -12.00248 -11.96086 -11.64592 -11.42384 -11.03622 -10.07984 -9.69580 -9.33862 -9.05017 -8.70230 -6.38101 -0.21952 -0.09515 0.69480 0.86146 1.03750 1.41470 1.47318 1.56611 2.06058 2.20163 2.22374 2.58307 3.05854 3.44337 3.52619 3.60054 3.79861 3.88809 4.18174 4.28123 4.30907 4.38485 4.50095 4.60819 4.70796 4.78743 4.84386 4.97013 4.99652 5.15068 5.23076 5.35002 5.48493 5.72085 5.81318 5.98476 6.08335 6.20643 6.53600 6.84099 6.86612 8.26561 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.004578 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.675552 B = 6115.357970 C = 7207.041176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.307 6.307 3 C 0.167 3.833 4 C -0.224 4.224 5 C 0.140 3.860 6 F -0.137 7.137 7 C -0.101 4.101 8 C -0.068 4.068 9 C -0.139 4.139 10 C 0.076 3.924 11 C -0.483 4.483 12 H 0.087 0.913 13 C 0.038 3.962 14 N -0.819 5.819 15 Si 0.981 3.019 16 H -0.254 1.254 17 H -0.265 1.265 18 H -0.267 1.267 19 C -0.208 4.208 20 C -0.115 4.115 21 C -0.042 4.042 22 F -0.166 7.166 23 C -0.035 4.035 24 C -0.083 4.083 25 Cl -0.043 7.043 26 H 0.130 0.870 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.180 0.820 30 H 0.117 0.883 31 H 0.291 0.709 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -10.749 3.114 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.220 6.220 3 C 0.120 3.880 4 C -0.244 4.244 5 C 0.120 3.880 6 F -0.115 7.115 7 C -0.103 4.103 8 C -0.069 4.069 9 C -0.158 4.158 10 C 0.073 3.927 11 C -0.511 4.511 12 H 0.105 0.895 13 C -0.178 4.178 14 N -0.444 5.444 15 Si 0.802 3.198 16 H -0.177 1.177 17 H -0.190 1.190 18 H -0.192 1.192 19 C -0.227 4.227 20 C -0.134 4.134 21 C -0.062 4.062 22 F -0.146 7.146 23 C -0.054 4.054 24 C -0.111 4.111 25 Cl -0.014 7.014 26 H 0.148 0.852 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.197 0.803 30 H 0.135 0.865 31 H 0.102 0.898 32 H 0.138 0.862 33 H 0.149 0.851 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.887 -11.165 2.967 12.966 hybrid contribution -0.013 0.547 -0.409 0.683 sum -5.900 -10.618 2.558 12.414 Atomic orbital electron populations 1.23552 0.75513 1.06485 1.02813 1.86173 1.24142 1.24080 1.87591 1.18267 0.89850 0.85236 0.94677 1.21138 1.02513 0.88892 1.11818 1.17716 0.88186 0.82430 0.99634 1.91486 1.76557 1.50106 1.93360 1.18747 0.91541 0.93793 1.06182 1.18384 1.01143 0.92686 0.94715 1.21230 1.00974 0.97172 0.96448 1.17949 0.90976 0.90739 0.93008 1.19885 1.16049 1.22544 0.92671 0.89536 1.26768 0.97033 0.92032 1.01961 1.69875 1.22559 1.27476 1.24486 0.85162 0.78562 0.79286 0.76830 1.17743 1.18961 1.19226 1.21121 1.05549 1.00191 0.95864 1.20740 0.98679 0.94353 0.99635 1.17452 1.04841 0.97399 0.86475 1.91284 1.76055 1.91943 1.55276 1.20849 1.00918 0.88127 0.95483 1.20028 0.89317 0.88676 1.13067 1.98345 1.71651 1.34307 1.97147 0.85152 0.91138 0.91298 0.80318 0.86517 0.89840 0.86212 0.85074 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.81 113.37 1.11 1.25 16 2 O -0.31 -7.17 9.94 -92.34 -0.92 -8.09 16 3 C 0.17 4.76 6.68 22.56 0.15 4.91 16 4 C -0.22 -6.51 9.00 22.37 0.20 -6.31 16 5 C 0.14 5.29 7.07 22.58 0.16 5.45 16 6 F -0.14 -5.63 16.68 44.97 0.75 -4.88 16 7 C -0.10 -4.16 5.00 -19.99 -0.10 -4.26 16 8 C -0.07 -3.23 5.00 -20.05 -0.10 -3.33 16 9 C -0.14 -7.07 8.36 22.94 0.19 -6.88 16 10 C 0.08 3.90 5.57 -21.31 -0.12 3.79 16 11 C -0.48 -24.39 9.04 23.43 0.21 -24.17 16 12 H 0.09 4.15 7.91 -2.91 -0.02 4.13 16 13 C 0.04 1.82 5.13 85.24 0.44 2.26 16 14 N -0.82 -41.02 10.96 21.82 0.24 -40.78 16 15 Si 0.98 36.06 29.59 68.60 2.03 38.09 16 16 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 17 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 18 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 19 C -0.21 -9.74 9.78 22.75 0.22 -9.51 16 20 C -0.12 -5.14 9.99 22.23 0.22 -4.92 16 21 C -0.04 -1.96 7.10 22.82 0.16 -1.80 16 22 F -0.17 -7.54 16.66 44.97 0.75 -6.79 16 23 C -0.04 -1.26 9.50 22.48 0.21 -1.04 16 24 C -0.08 -2.61 6.33 22.38 0.14 -2.47 16 25 Cl -0.04 -1.20 28.49 -2.72 -0.08 -1.28 16 26 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 0.83 7.65 -2.38 -0.02 0.82 16 28 H 0.07 0.85 7.65 -2.39 -0.02 0.83 16 29 H 0.18 3.85 6.28 -2.91 -0.02 3.83 16 30 H 0.12 6.17 6.16 -2.91 -0.02 6.16 16 31 H 0.29 13.17 8.30 -92.70 -0.77 12.40 16 32 H 0.12 5.09 8.06 -2.92 -0.02 5.06 16 33 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.15 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -59.27 323.25 7.05 -52.22 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 1.17 Total: 18.55 kcal Atomic # 6 Polarization: -50.15 SS G_CDS: 3.11 Total: -47.04 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.24 Total: -40.78 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.92 Total: -8.09 kcal Atomic # 9 Polarization: -13.18 SS G_CDS: 1.50 Total: -11.68 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -59.27 7.05 -52.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244352170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.850 kcal (2) G-P(sol) polarization free energy of solvation -59.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds