Wall clock time and date at job start Tue Mar 31 2020 14:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35982 * 117.00024 * 2 1 4 4 C 1.38757 * 119.97048 * 0.22427 * 3 2 1 5 5 C 1.38242 * 120.22447 * 180.23500 * 4 3 2 6 6 C 1.38260 * 120.17000 * 359.79601 * 5 4 3 7 7 F 1.35106 * 120.02660 * 180.02562 * 6 5 4 8 8 C 1.39519 * 119.95144 * 359.97155 * 6 5 4 9 9 C 1.48379 * 120.11670 * 179.97438 * 8 6 5 10 10 C 1.39701 * 119.98852 * 245.02573 * 9 8 6 11 11 C 1.38622 * 120.34905 * 179.97438 * 10 9 8 12 12 F 1.35104 * 119.83521 * 180.02562 * 11 10 9 13 13 C 1.37935 * 120.32870 * 0.02562 * 11 10 9 14 14 C 1.40719 * 119.97151 * 359.97438 * 13 11 10 15 15 C 1.41418 * 120.17867 * 180.02562 * 14 13 11 16 16 H 1.08009 * 119.99979 * 24.37286 * 15 14 13 17 17 C 1.39923 * 120.00386 * 204.37893 * 15 14 13 18 18 N 1.30828 * 120.00016 * 17.73436 * 17 15 14 19 19 Si 1.86801 * 119.99943 * 197.73984 * 17 15 14 20 20 H 1.48498 * 109.47558 * 59.99815 * 19 17 15 21 21 H 1.48509 * 109.47021 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47005 * 299.99176 * 19 17 15 23 23 C 1.38747 * 119.98316 * 64.74949 * 9 8 6 24 24 C 1.38582 * 119.97447 * 179.97438 * 3 2 1 25 25 Cl 1.73599 * 120.08775 * 0.02562 * 24 3 2 26 26 H 1.09000 * 109.47343 * 60.00614 * 1 2 3 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47385 * 300.00512 * 1 2 3 29 29 H 1.08001 * 119.88968 * 359.97438 * 4 3 2 30 30 H 1.07995 * 119.91117 * 179.77222 * 5 4 3 31 31 H 1.08005 * 119.82953 * 0.02562 * 10 9 8 32 32 H 1.08006 * 120.02121 * 179.97438 * 13 11 10 33 33 H 0.97004 * 120.00485 * 180.02562 * 18 17 15 34 34 H 1.07998 * 120.16457 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2900 2.3749 0.0047 5 6 1.9121 3.6094 -0.0002 6 6 3.2922 3.6920 -0.0055 7 9 3.8972 4.9001 -0.0097 8 6 4.0597 2.5269 -0.0054 9 6 5.5411 2.6113 -0.0117 10 6 6.2628 2.1379 -1.1102 11 6 7.6469 2.2135 -1.1242 12 9 8.3344 1.7529 -2.1921 13 6 8.3257 2.7565 -0.0532 14 6 7.6124 3.2375 1.0604 15 6 8.3038 3.7956 2.1605 16 1 9.2890 4.2162 2.0222 17 6 7.7118 3.8029 3.4283 18 7 6.7030 3.0100 3.6838 19 14 8.3618 4.9448 4.7561 20 1 8.2464 6.3527 4.2983 21 1 7.5683 4.7620 5.9981 22 1 9.7869 4.6276 5.0276 23 6 6.2087 3.1656 1.0710 24 6 3.4302 1.2835 0.0005 25 17 4.3773 -0.1714 0.0005 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.2116 2.3158 0.0079 30 1 1.3185 4.5116 -0.0002 31 1 5.7396 1.7115 -1.9534 32 1 9.4042 2.8126 -0.0692 33 1 6.2923 3.0152 4.5626 34 1 5.6527 3.5367 1.9192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245894607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:35 Heat of formation + Delta-G solvation = -94.727284 kcal Electronic energy + Delta-G solvation = -24453.408354 eV Core-core repulsion = 20399.017124 eV Total energy + Delta-G solvation = -4054.391230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.047 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.42619 -47.74724 -40.07532 -37.96930 -36.74786 -35.93102 -33.81955 -31.83658 -30.07896 -29.42621 -28.02280 -27.22827 -25.51012 -23.13439 -22.38631 -21.05503 -20.36734 -18.25385 -17.27314 -17.13725 -16.92384 -15.94558 -15.62643 -15.19340 -15.13713 -14.74606 -14.67182 -14.52843 -14.44965 -14.38261 -13.60867 -13.22512 -12.97616 -12.83890 -12.70940 -12.17464 -11.90914 -11.71323 -11.35557 -11.20367 -11.13276 -11.03062 -10.75163 -10.66240 -10.52466 -10.35159 -10.19952 -9.69243 -9.28955 -8.66392 -7.97588 -7.60357 -7.33056 -6.90432 -4.52868 1.09089 1.25523 2.49239 2.53250 2.69920 3.01796 3.03348 3.09444 3.16761 3.56697 3.84398 4.39356 4.47628 4.74645 4.78167 4.96958 5.00664 5.15436 5.30835 5.37110 5.51289 5.60103 5.78512 6.03523 6.08117 6.20352 6.26542 6.53296 6.77522 6.77584 6.92322 7.06422 7.22432 7.35490 7.52758 7.71921 7.85945 8.05952 8.41002 8.70571 8.72224 10.04018 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.012113 B = 0.005011 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.099258 B = 5586.717349 C = 6496.461878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.304 6.304 3 C 0.121 3.879 4 C -0.183 4.183 5 C -0.114 4.114 6 C 0.084 3.916 7 F -0.125 7.125 8 C 0.001 3.999 9 C -0.034 4.034 10 C -0.243 4.243 11 C 0.116 3.884 12 F -0.166 7.166 13 C -0.254 4.254 14 C 0.128 3.872 15 C -0.454 4.454 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.784 5.784 19 Si 0.911 3.089 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.129 4.129 24 C -0.035 4.035 25 Cl -0.033 7.033 26 H 0.055 0.945 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.285 0.715 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 -1.673 -3.132 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.075 3.925 4 C -0.202 4.202 5 C -0.133 4.133 6 C 0.064 3.936 7 F -0.104 7.104 8 C -0.001 4.001 9 C -0.034 4.034 10 C -0.264 4.264 11 C 0.098 3.902 12 F -0.145 7.145 13 C -0.274 4.274 14 C 0.125 3.875 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.143 4.143 18 N -0.408 5.408 19 Si 0.735 3.265 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.149 4.149 24 C -0.062 4.062 25 Cl -0.004 7.004 26 H 0.074 0.926 27 H 0.119 0.881 28 H 0.075 0.925 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.096 0.904 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.960 -2.060 -2.964 13.453 hybrid contribution 0.218 0.535 0.510 0.771 sum -12.742 -1.525 -2.454 13.066 Atomic orbital electron populations 1.23082 0.78435 1.04034 1.01320 1.86181 1.21182 1.25712 1.88648 1.18522 0.90224 0.85165 0.98567 1.20880 1.00020 0.90737 1.08585 1.20861 0.92440 0.98671 1.01372 1.17427 0.90028 0.80436 1.05724 1.91534 1.83754 1.41206 1.93870 1.18723 0.94811 0.89445 0.97108 1.17804 0.87593 1.02301 0.95724 1.20066 0.91585 1.14414 1.00301 1.17298 0.89485 0.99375 0.84091 1.91343 1.80254 1.87445 1.55464 1.20988 0.98692 1.11042 0.96695 1.17253 0.91179 0.88041 0.91040 1.19561 1.03182 1.33657 0.91832 0.89862 1.25950 0.94071 0.94195 1.00072 1.69801 1.18822 1.28758 1.23420 0.86305 0.79886 0.81303 0.78986 1.18586 1.20184 1.18806 1.21394 0.94393 1.02234 0.96836 1.19964 0.88283 0.88897 1.09073 1.98377 1.71641 1.33698 1.96643 0.92606 0.88150 0.92546 0.84111 0.84141 0.88013 0.87578 0.90414 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -4.13 9.95 -19.69 -0.20 -4.33 16 3 C 0.12 1.85 6.67 -39.26 -0.26 1.59 16 4 C -0.18 -2.31 9.03 -39.39 -0.36 -2.67 16 5 C -0.11 -1.58 10.01 -39.57 -0.40 -1.98 16 6 C 0.08 1.51 7.23 -39.10 -0.28 1.23 16 7 F -0.13 -2.44 16.65 2.25 0.04 -2.40 16 8 C 0.00 0.02 5.31 -104.82 -0.56 -0.54 16 9 C -0.03 -0.78 4.35 -104.99 -0.46 -1.24 16 10 C -0.24 -5.61 8.81 -38.89 -0.34 -5.96 16 11 C 0.12 2.79 7.28 -39.55 -0.29 2.50 16 12 F -0.17 -3.77 17.26 2.25 0.04 -3.74 16 13 C -0.25 -6.31 9.76 -38.76 -0.38 -6.69 16 14 C 0.13 3.33 5.57 -106.87 -0.60 2.74 16 15 C -0.45 -11.63 9.05 -37.74 -0.34 -11.97 16 16 H 0.08 2.04 7.91 -52.48 -0.41 1.62 16 17 C 0.08 1.85 5.14 -17.35 -0.09 1.76 16 18 N -0.78 -19.59 10.96 55.55 0.61 -18.98 16 19 Si 0.91 18.06 29.59 -169.99 -5.03 13.03 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.13 -3.28 8.17 -38.52 -0.31 -3.59 16 24 C -0.03 -0.64 6.33 -39.03 -0.25 -0.89 16 25 Cl -0.03 -0.62 26.84 -51.86 -1.39 -2.02 16 26 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.14 1.24 6.28 -52.49 -0.33 0.91 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 32 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 33 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 34 H 0.13 3.31 6.16 -52.49 -0.32 2.98 16 LS Contribution 321.37 15.07 4.84 4.84 Total: -1.00 -28.05 321.37 -7.69 -35.75 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -2.69 Total: 2.33 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -3.92 Total: -24.49 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.33 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 0.08 Total: -6.14 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.39 Total: -2.02 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.05 -7.69 -35.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245894607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.978 kcal (2) G-P(sol) polarization free energy of solvation -28.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds