Wall clock time and date at job start Tue Mar 31 2020 13:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36962 * 120.00371 * 2 1 4 4 H 1.07998 * 120.00220 * 157.73533 * 3 2 1 5 5 C 1.38992 * 119.99356 * 337.73932 * 3 2 1 6 6 N 1.31403 * 120.00433 * 345.81530 * 5 3 2 7 7 Si 1.86801 * 119.99661 * 165.81408 * 5 3 2 8 8 H 1.48508 * 109.46826 * 89.99678 * 7 5 3 9 9 H 1.48497 * 109.47324 * 209.99848 * 7 5 3 10 10 H 1.48504 * 109.47094 * 330.00311 * 7 5 3 11 11 C 1.34776 * 120.00223 * 180.02562 * 2 1 3 12 12 O 1.21631 * 120.00392 * 175.93428 * 11 2 1 13 13 C 1.47429 * 119.99709 * 356.21409 * 11 2 1 14 14 C 1.36707 * 125.77343 * 187.53507 * 13 11 2 15 15 N 1.35083 * 106.77776 * 179.90043 * 14 13 11 16 16 C 1.40269 * 126.60659 * 180.10727 * 15 14 13 17 17 C 1.38809 * 120.07292 * 359.97438 * 16 15 14 18 18 C 1.38131 * 119.98574 * 179.74465 * 17 16 15 19 19 C 1.38289 * 120.12029 * 0.50493 * 18 17 16 20 20 C 1.38339 * 120.13637 * 359.76806 * 19 18 17 21 21 Cl 1.73603 * 119.98975 * 179.97438 * 20 19 18 22 22 C 1.38454 * 120.02181 * 359.97438 * 20 19 18 23 23 F 1.35097 * 120.06174 * 179.97438 * 22 20 19 24 24 N 1.40207 * 106.78003 * 0.35265 * 15 14 13 25 25 N 1.28751 * 108.41066 * 359.77676 * 24 15 14 26 26 H 1.09005 * 109.46999 * 216.10899 * 1 2 3 27 27 H 1.09007 * 109.47117 * 336.10245 * 1 2 3 28 28 H 1.08991 * 109.47259 * 96.10433 * 1 2 3 29 29 H 0.96997 * 119.99727 * 180.02562 * 6 5 3 30 30 H 1.07997 * 126.60571 * 0.02967 * 14 13 11 31 31 H 1.08004 * 120.00781 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.93772 * 180.25229 * 18 17 16 33 33 H 1.07997 * 119.92635 * 179.75064 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1861 0.0000 4 1 3.1694 1.2209 0.3544 5 6 1.5325 2.3449 -0.4560 6 7 0.4123 2.2677 -1.1386 7 14 2.2954 4.0121 -0.0985 8 1 3.2290 4.3747 -1.1950 9 1 1.2242 5.0361 -0.0014 10 1 3.0395 3.9510 1.1852 11 6 2.1389 -1.1672 -0.0005 12 8 3.3529 -1.1685 -0.0752 13 6 1.4041 -2.4426 0.0832 14 6 1.9654 -3.6796 0.2372 15 7 0.9483 -4.5680 0.2689 16 6 1.0569 -5.9588 0.4152 17 6 2.3064 -6.5492 0.5450 18 6 2.4109 -7.9184 0.6942 19 6 1.2731 -8.7043 0.7041 20 6 0.0255 -8.1218 0.5694 21 17 -1.4003 -9.1120 0.5816 22 6 -0.0862 -6.7494 0.4248 23 9 -1.3041 -6.1798 0.2927 24 7 -0.2363 -3.8326 0.1218 25 7 0.0693 -2.5864 0.0153 26 1 -0.3633 -0.8303 0.6057 27 1 -0.3634 0.9396 0.4163 28 1 -0.3633 -0.1093 -1.0217 29 1 -0.0182 3.0764 -1.4571 30 1 3.0187 -3.9031 0.3198 31 1 3.1966 -5.9377 0.5331 32 1 3.3834 -8.3765 0.7993 33 1 1.3587 -9.7749 0.8169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181348546.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:25 Heat of formation + Delta-G solvation = 74.248081 kcal Electronic energy + Delta-G solvation = -23985.335150 eV Core-core repulsion = 19990.483954 eV Total energy + Delta-G solvation = -3994.851196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.17608 -42.10446 -39.64313 -38.11131 -37.07982 -34.80515 -34.57521 -31.72317 -31.21858 -30.59450 -29.84310 -26.37764 -25.08386 -24.40670 -23.72658 -22.00047 -21.76173 -19.83034 -18.49928 -17.67406 -16.92613 -16.81677 -16.45694 -15.91987 -15.70883 -15.47180 -15.12937 -14.69411 -14.55031 -13.96736 -13.81866 -13.71234 -13.41167 -12.99307 -12.81531 -12.30950 -12.20528 -11.92026 -11.64257 -11.60772 -11.48759 -11.30707 -11.08784 -11.01789 -10.54195 -10.37264 -9.99056 -9.32611 -9.23727 -9.03343 -8.69720 -8.60701 -7.71953 -6.40304 -3.90916 0.07336 0.38051 1.42173 1.60442 2.00690 2.30093 2.90630 3.17372 3.22481 3.28039 3.46681 3.97129 4.09284 4.16352 4.24715 4.39268 4.53202 4.65103 4.75622 5.04115 5.14180 5.17238 5.29778 5.41219 5.52645 5.59881 5.68933 5.87829 6.18973 6.61783 6.83006 7.05783 7.39004 7.49476 8.03767 8.21363 8.44041 9.08833 9.33186 9.91065 10.61684 Molecular weight = 324.05amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.002732 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.366437 B =10246.624021 C =10999.476530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.410 5.410 3 C -0.304 4.304 4 H 0.104 0.896 5 C 0.032 3.968 6 N -0.863 5.863 7 Si 0.931 3.069 8 H -0.275 1.275 9 H -0.281 1.281 10 H -0.267 1.267 11 C 0.500 3.500 12 O -0.594 6.594 13 C -0.040 4.040 14 C 0.060 3.940 15 N -0.330 5.330 16 C 0.132 3.868 17 C -0.101 4.101 18 C -0.091 4.091 19 C -0.088 4.088 20 C -0.059 4.059 21 Cl -0.037 7.037 22 C 0.118 3.882 23 F -0.099 7.099 24 N -0.063 5.063 25 N -0.192 5.192 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.271 0.729 30 H 0.204 0.796 31 H 0.153 0.847 32 H 0.153 0.847 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -22.454 4.267 22.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.125 5.125 3 C -0.433 4.433 4 H 0.122 0.878 5 C -0.173 4.173 6 N -0.500 5.500 7 Si 0.757 3.243 8 H -0.201 1.201 9 H -0.206 1.206 10 H -0.192 1.192 11 C 0.287 3.713 12 O -0.480 6.480 13 C -0.176 4.176 14 C -0.090 4.090 15 N -0.111 5.111 16 C 0.038 3.962 17 C -0.122 4.122 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.087 4.087 21 Cl -0.007 7.007 22 C 0.095 3.905 23 F -0.077 7.077 24 N -0.041 5.041 25 N -0.066 5.066 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.221 0.779 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.809 -22.290 4.037 22.667 hybrid contribution 0.762 0.804 0.006 1.108 sum -0.047 -21.486 4.044 21.864 Atomic orbital electron populations 1.21888 0.79777 1.00958 1.01454 1.43539 1.06496 1.04280 1.58158 1.19768 0.99738 0.83329 1.40446 0.87844 1.25463 0.96450 1.00448 0.94965 1.70058 1.18056 1.29831 1.32078 0.85864 0.78612 0.80558 0.79290 1.20095 1.20644 1.19179 1.16479 0.86427 0.81177 0.87224 1.90620 1.12622 1.85987 1.58771 1.22173 0.88961 0.96305 1.10193 1.23219 0.95576 0.88352 1.01891 1.47453 1.08075 1.04675 1.50853 1.17495 0.93871 0.79689 1.05188 1.21077 0.95155 0.96081 0.99854 1.21039 0.99269 0.92013 0.98721 1.21105 0.89356 1.01545 0.98752 1.20811 0.90712 0.89419 1.07763 1.98412 1.37350 1.68194 1.96793 1.16931 0.80600 0.89168 1.03840 1.91668 1.39231 1.84477 1.92346 1.82256 1.02662 0.97194 1.21960 1.74981 1.13557 1.08093 1.09960 0.92584 0.90839 0.92847 0.91833 0.77944 0.82956 0.82939 0.83169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.54 7.88 59.84 0.47 3.01 16 2 N -0.41 -11.04 3.01 -123.42 -0.37 -11.41 16 3 C -0.30 -8.52 9.26 -14.98 -0.14 -8.66 16 4 H 0.10 2.95 7.45 -52.49 -0.39 2.56 16 5 C 0.03 0.85 5.01 -17.46 -0.09 0.77 16 6 N -0.86 -23.24 10.79 55.50 0.60 -22.65 16 7 Si 0.93 20.39 29.58 -169.99 -5.03 15.37 16 8 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 11 C 0.50 12.79 7.61 -12.52 -0.10 12.70 16 12 O -0.59 -16.30 16.59 5.25 0.09 -16.21 16 13 C -0.04 -0.86 6.69 -83.54 -0.56 -1.41 16 14 C 0.06 1.01 10.62 -16.67 -0.18 0.83 16 15 N -0.33 -5.27 3.82 -10.36 -0.04 -5.31 16 16 C 0.13 1.62 6.70 -83.51 -0.56 1.06 16 17 C -0.10 -0.82 9.47 -39.41 -0.37 -1.19 16 18 C -0.09 -0.50 10.04 -39.60 -0.40 -0.90 16 19 C -0.09 -0.55 9.82 -39.53 -0.39 -0.94 16 20 C -0.06 -0.55 6.32 -39.46 -0.25 -0.80 16 21 Cl -0.04 -0.33 28.61 -51.86 -1.48 -1.82 16 22 C 0.12 1.44 7.27 -39.22 -0.29 1.16 16 23 F -0.10 -1.48 15.15 2.25 0.03 -1.44 16 24 N -0.06 -1.21 12.06 60.35 0.73 -0.48 16 25 N -0.19 -4.07 8.83 32.85 0.29 -3.78 16 26 H 0.06 1.28 5.33 -51.93 -0.28 1.01 16 27 H 0.07 1.86 6.55 -51.93 -0.34 1.52 16 28 H 0.05 1.37 7.95 -51.93 -0.41 0.96 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.20 2.61 7.13 -52.49 -0.37 2.23 16 31 H 0.15 0.95 6.81 -52.48 -0.36 0.59 16 32 H 0.15 0.34 8.06 -52.48 -0.42 -0.09 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -33.16 312.10 -5.45 -38.61 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -2.13 Total: -1.20 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.84 Total: 5.62 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.21 Total: -43.63 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.09 Total: -16.21 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.03 Total: -1.44 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.37 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.16 -5.45 -38.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181348546.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.862 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds