Wall clock time and date at job start Tue Mar 31 2020 15:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47168 * 270.00295 * 3 2 1 5 5 H 1.48507 * 109.47016 * 30.00196 * 3 2 1 6 6 H 1.48503 * 109.47366 * 149.99661 * 3 2 1 7 7 C 1.39890 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00304 * 196.24133 * 7 2 1 9 9 C 1.41157 * 119.99869 * 16.23270 * 7 2 1 10 10 C 1.40889 * 120.15896 * 208.85033 * 9 7 2 11 11 C 1.36372 * 119.84726 * 180.02562 * 10 9 7 12 12 C 1.39465 * 120.17979 * 359.74636 * 11 10 9 13 13 N 1.39280 * 119.84151 * 180.27590 * 12 11 10 14 14 C 1.34779 * 120.00145 * 329.04995 * 13 12 11 15 15 O 1.21585 * 119.99512 * 4.64540 * 14 13 12 16 16 N 1.34769 * 120.00274 * 184.64305 * 14 13 12 17 17 C 1.47339 * 121.36893 * 180.02562 * 16 14 13 18 18 C 1.53100 * 107.89690 * 118.09704 * 17 16 14 19 19 C 1.49966 * 110.40585 * 45.50428 * 18 17 16 20 20 C 1.29782 * 124.56845 * 341.00368 * 19 18 17 21 21 F 1.35101 * 118.19571 * 180.85348 * 20 19 18 22 22 C 1.47006 * 121.36723 * 359.71403 * 16 14 13 23 23 C 1.39578 * 120.32435 * 0.51480 * 12 11 10 24 24 Cl 1.73599 * 119.92938 * 179.76606 * 23 12 11 25 25 C 1.36480 * 120.14592 * 359.48372 * 23 12 11 26 26 H 0.97000 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.07777 * 0.04900 * 10 9 7 28 28 H 1.08004 * 119.91598 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00006 * 149.04763 * 13 12 11 30 30 H 1.08997 * 109.77441 * 237.69737 * 17 16 14 31 31 H 1.08997 * 109.77293 * 358.49778 * 17 16 14 32 32 H 1.08997 * 109.31364 * 165.79159 * 18 17 16 33 33 H 1.09007 * 109.31188 * 285.40551 * 18 17 16 34 34 H 1.08000 * 117.71923 * 161.02410 * 19 18 17 35 35 H 1.08997 * 109.51965 * 342.93508 * 22 16 14 36 36 H 1.08997 * 109.52037 * 103.12488 * 22 16 14 37 37 H 1.07991 * 120.09462 * 180.23574 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0083 -1.2115 -0.0005 8 1 3.0560 -1.2302 0.2610 9 6 1.3447 -2.4094 -0.3428 10 6 1.7753 -3.6367 0.1988 11 6 1.1300 -4.7903 -0.1366 12 6 0.0427 -4.7570 -1.0094 13 7 -0.6149 -5.9387 -1.3427 14 6 0.0669 -7.1006 -1.3847 15 8 1.2354 -7.1321 -1.0502 16 7 -0.5465 -8.2274 -1.7974 17 6 0.1697 -9.5137 -1.8546 18 6 -0.5243 -10.4818 -0.8927 19 6 -2.0124 -10.4131 -1.0650 20 6 -2.6437 -9.4297 -1.6295 21 9 -3.9914 -9.4932 -1.7007 22 6 -1.9597 -8.2249 -2.2026 23 6 -0.3867 -3.5460 -1.5545 24 17 -1.7375 -3.5173 -2.6445 25 6 0.2494 -2.3835 -1.2279 26 1 -0.4851 0.8400 0.0004 27 1 2.6143 -3.6638 0.8783 28 1 1.4588 -5.7317 0.2782 29 1 -1.5636 -5.9256 -1.5445 30 1 0.1328 -9.9115 -2.8687 31 1 1.2068 -9.3721 -1.5507 32 1 -0.1844 -11.4973 -1.0958 33 1 -0.2701 -10.2149 0.1331 34 1 -2.5999 -11.2395 -0.6931 35 1 -2.4433 -7.3212 -1.8317 36 1 -2.0268 -8.2550 -3.2901 37 1 -0.0859 -1.4465 -1.6471 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335583250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:03 Heat of formation + Delta-G solvation = -32.550261 kcal Electronic energy + Delta-G solvation = -24467.006039 eV Core-core repulsion = 20571.064064 eV Total energy + Delta-G solvation = -3895.941976 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -49.07695 -40.47549 -38.27664 -37.01152 -35.55504 -34.59480 -33.46820 -32.56191 -30.93584 -29.44434 -29.00836 -26.33043 -25.02582 -23.65061 -21.87083 -21.05285 -20.28936 -18.77498 -18.03537 -17.48601 -16.90214 -16.80755 -15.97018 -15.66665 -15.36987 -15.04673 -14.89076 -14.47359 -14.29945 -13.78905 -13.35466 -13.28653 -12.97660 -12.85637 -12.57090 -12.49090 -12.23129 -11.93772 -11.76528 -11.30452 -11.26829 -11.14917 -10.99960 -10.50517 -10.39970 -10.15422 -9.93167 -9.67578 -9.28870 -9.16517 -8.93217 -8.79206 -7.56808 -7.09536 -6.85223 -4.42678 1.58567 2.41360 2.63319 2.83623 3.03760 3.06540 3.07686 3.14017 3.47841 3.87555 3.88128 4.08331 4.36177 4.49514 4.69857 4.83737 5.00896 5.04648 5.20432 5.41474 5.47508 5.68014 5.69483 6.02966 6.11595 6.21594 6.28646 6.51535 6.65002 6.83200 6.95235 7.04014 7.12194 7.30253 7.60652 7.67639 7.86634 8.07725 8.23761 8.40060 8.71286 8.75011 8.89507 10.09200 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.003155 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.556094 B = 8873.582685 C = 9680.788879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.083 0.917 9 C 0.115 3.885 10 C -0.208 4.208 11 C -0.072 4.072 12 C 0.018 3.982 13 N -0.661 5.661 14 C 0.708 3.292 15 O -0.570 6.570 16 N -0.631 5.631 17 C 0.125 3.875 18 C -0.095 4.095 19 C -0.184 4.184 20 C 0.037 3.963 21 F -0.148 7.148 22 C 0.136 3.864 23 C -0.017 4.017 24 Cl -0.122 7.122 25 C -0.143 4.143 26 H 0.283 0.717 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.394 0.606 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 -14.540 -3.734 15.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.111 3.889 10 C -0.229 4.229 11 C -0.092 4.092 12 C -0.076 4.076 13 N -0.309 5.309 14 C 0.411 3.589 15 O -0.447 6.447 16 N -0.371 5.371 17 C 0.002 3.998 18 C -0.133 4.133 19 C -0.204 4.204 20 C 0.017 3.983 21 F -0.127 7.127 22 C 0.012 3.988 23 C -0.045 4.045 24 Cl -0.094 7.094 25 C -0.163 4.163 26 H 0.094 0.906 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.230 0.770 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.241 -14.379 -3.584 15.413 hybrid contribution -0.897 0.711 -0.191 1.160 sum -5.138 -13.668 -3.775 15.082 Atomic orbital electron populations 1.69813 1.07540 1.29626 1.34462 1.25937 0.94804 1.01445 0.92187 0.86261 0.80463 0.80337 0.79418 1.19179 1.20261 1.18514 1.19542 0.97782 0.90806 1.40421 0.89865 1.17545 0.90338 0.92600 0.88387 1.20832 1.04257 0.92536 1.05243 1.20555 0.94577 0.98621 0.95435 1.16650 1.01968 0.82169 1.06767 1.42184 1.11555 1.05392 1.71736 1.15689 0.84644 0.79897 0.78689 1.90875 1.14928 1.84154 1.54745 1.47218 1.09904 1.08612 1.71351 1.21595 0.97893 0.81108 0.99157 1.20706 0.90630 1.00557 1.01410 1.22146 0.98111 0.98615 1.01494 1.19259 0.77161 0.98314 1.03564 1.91515 1.29829 1.96525 1.94787 1.20394 0.82210 0.95969 1.00260 1.20318 0.92418 0.94690 0.97078 1.98248 1.47436 1.98858 1.64857 1.20786 0.99360 0.95266 1.00889 0.90578 0.87932 0.85648 0.76999 0.90971 0.87698 0.89204 0.89636 0.86263 0.88577 0.89041 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.67 11.15 55.54 0.62 -19.05 16 2 C 0.07 1.81 5.13 -17.34 -0.09 1.72 16 3 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.60 9.02 -37.86 -0.34 -11.95 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 9 C 0.11 2.94 5.53 -106.80 -0.59 2.35 16 10 C -0.21 -5.04 9.74 -39.25 -0.38 -5.42 16 11 C -0.07 -1.66 8.65 -39.80 -0.34 -2.00 16 12 C 0.02 0.41 6.39 -83.52 -0.53 -0.13 16 13 N -0.66 -12.03 4.99 -14.07 -0.07 -12.10 16 14 C 0.71 12.44 8.20 -86.92 -0.71 11.73 16 15 O -0.57 -11.82 12.97 5.29 0.07 -11.75 16 16 N -0.63 -8.27 2.97 -180.10 -0.54 -8.80 16 17 C 0.13 1.30 6.50 -3.53 -0.02 1.28 16 18 C -0.10 -0.80 6.28 -28.19 -0.18 -0.97 16 19 C -0.18 -1.69 9.69 -36.04 -0.35 -2.04 16 20 C 0.04 0.38 7.26 -36.06 -0.26 0.12 16 21 F -0.15 -1.66 17.19 2.25 0.04 -1.62 16 22 C 0.14 1.46 6.49 -5.29 -0.03 1.43 16 23 C -0.02 -0.38 6.30 -39.72 -0.25 -0.63 16 24 Cl -0.12 -2.33 27.85 -51.86 -1.44 -3.77 16 25 C -0.14 -3.56 8.37 -39.23 -0.33 -3.89 16 26 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 28 H 0.13 2.87 5.87 -52.48 -0.31 2.56 16 29 H 0.39 6.24 5.54 -40.82 -0.23 6.02 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.22 7.07 -51.93 -0.37 0.86 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.10 1.03 5.90 -51.93 -0.31 0.73 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.13 3.33 6.43 -52.49 -0.34 2.99 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -28.27 327.25 -9.47 -37.74 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -3.63 Total: 9.80 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -4.42 Total: -8.40 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.01 Total: -39.96 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.07 Total: -11.75 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.44 Total: -3.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.27 -9.47 -37.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335583250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.186 kcal (2) G-P(sol) polarization free energy of solvation -28.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds