Wall clock time and date at job start Tue Mar 31 2020 15:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86798 * 120.00037 * 2 1 4 4 H 1.48503 * 109.47168 * 270.00295 * 3 2 1 5 5 H 1.48507 * 109.47016 * 30.00196 * 3 2 1 6 6 H 1.48503 * 109.47366 * 149.99661 * 3 2 1 7 7 C 1.39890 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00304 * 196.24133 * 7 2 1 9 9 C 1.41157 * 119.99869 * 16.23270 * 7 2 1 10 10 C 1.40889 * 120.15896 * 208.85033 * 9 7 2 11 11 C 1.36372 * 119.84726 * 180.02562 * 10 9 7 12 12 C 1.39465 * 120.17979 * 359.74636 * 11 10 9 13 13 N 1.39280 * 119.84151 * 180.27590 * 12 11 10 14 14 C 1.34779 * 120.00145 * 329.04995 * 13 12 11 15 15 O 1.21585 * 119.99512 * 4.64540 * 14 13 12 16 16 N 1.34769 * 120.00274 * 184.64305 * 14 13 12 17 17 C 1.47339 * 121.36893 * 180.02562 * 16 14 13 18 18 C 1.53100 * 107.89690 * 118.09704 * 17 16 14 19 19 C 1.49966 * 110.40585 * 45.50428 * 18 17 16 20 20 C 1.29782 * 124.56845 * 341.00368 * 19 18 17 21 21 F 1.35101 * 118.19571 * 180.85348 * 20 19 18 22 22 C 1.47006 * 121.36723 * 359.71403 * 16 14 13 23 23 C 1.39578 * 120.32435 * 0.51480 * 12 11 10 24 24 Cl 1.73599 * 119.92938 * 179.76606 * 23 12 11 25 25 C 1.36480 * 120.14592 * 359.48372 * 23 12 11 26 26 H 0.97000 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.07777 * 0.04900 * 10 9 7 28 28 H 1.08004 * 119.91598 * 180.02562 * 11 10 9 29 29 H 0.97002 * 120.00006 * 149.04763 * 13 12 11 30 30 H 1.08997 * 109.77441 * 237.69737 * 17 16 14 31 31 H 1.08997 * 109.77293 * 358.49778 * 17 16 14 32 32 H 1.08997 * 109.31364 * 165.79159 * 18 17 16 33 33 H 1.09007 * 109.31188 * 285.40551 * 18 17 16 34 34 H 1.08000 * 117.71923 * 161.02410 * 19 18 17 35 35 H 1.08997 * 109.51965 * 342.93508 * 22 16 14 36 36 H 1.08997 * 109.52037 * 103.12488 * 22 16 14 37 37 H 1.07991 * 120.09462 * 180.23574 * 25 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0083 -1.2115 -0.0005 8 1 3.0560 -1.2302 0.2610 9 6 1.3447 -2.4094 -0.3428 10 6 1.7753 -3.6367 0.1988 11 6 1.1300 -4.7903 -0.1366 12 6 0.0427 -4.7570 -1.0094 13 7 -0.6149 -5.9387 -1.3427 14 6 0.0669 -7.1006 -1.3847 15 8 1.2354 -7.1321 -1.0502 16 7 -0.5465 -8.2274 -1.7974 17 6 0.1697 -9.5137 -1.8546 18 6 -0.5243 -10.4818 -0.8927 19 6 -2.0124 -10.4131 -1.0650 20 6 -2.6437 -9.4297 -1.6295 21 9 -3.9914 -9.4932 -1.7007 22 6 -1.9597 -8.2249 -2.2026 23 6 -0.3867 -3.5460 -1.5545 24 17 -1.7375 -3.5173 -2.6445 25 6 0.2494 -2.3835 -1.2279 26 1 -0.4851 0.8400 0.0004 27 1 2.6143 -3.6638 0.8783 28 1 1.4588 -5.7317 0.2782 29 1 -1.5636 -5.9256 -1.5445 30 1 0.1328 -9.9115 -2.8687 31 1 1.2068 -9.3721 -1.5507 32 1 -0.1844 -11.4973 -1.0958 33 1 -0.2701 -10.2149 0.1331 34 1 -2.5999 -11.2395 -0.6931 35 1 -2.4433 -7.3212 -1.8317 36 1 -2.0268 -8.2550 -3.2901 37 1 -0.0859 -1.4465 -1.6471 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335583250.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:01 Heat of formation + Delta-G solvation = -46.541828 kcal Electronic energy + Delta-G solvation = -24467.612759 eV Core-core repulsion = 20571.064064 eV Total energy + Delta-G solvation = -3896.548696 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.88574 -41.80994 -39.76793 -38.33663 -37.25432 -36.21830 -35.00854 -33.76110 -31.80596 -31.27262 -30.74041 -27.56109 -26.46635 -24.65405 -23.55306 -22.69933 -21.63889 -20.07761 -19.34380 -19.01380 -18.17284 -17.83283 -17.21642 -16.93542 -16.53508 -16.36786 -16.09233 -15.95256 -15.55381 -15.26521 -14.73368 -14.53139 -14.36286 -14.21307 -13.96405 -13.71128 -13.57553 -13.17843 -12.98795 -12.90744 -12.74298 -12.55252 -12.17210 -12.08319 -12.04368 -11.89329 -11.60345 -11.36509 -10.97576 -10.64716 -9.96492 -9.85321 -9.40549 -8.87320 -8.64216 -6.32192 0.66466 0.83752 0.96084 1.34439 1.41975 1.46543 1.51444 1.54796 2.05064 2.22600 2.69032 2.74832 3.13270 3.57325 3.59339 3.89005 4.03500 4.21546 4.29869 4.34468 4.46644 4.65397 4.74257 4.87176 4.89371 4.95362 5.00283 5.18936 5.25394 5.32262 5.36418 5.40807 5.46462 5.64455 5.85076 5.92780 6.02920 6.23850 6.51433 6.82355 6.86049 6.88354 7.46654 8.31806 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.003155 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.556094 B = 8873.582685 C = 9680.788879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.490 4.490 8 H 0.082 0.918 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.079 4.079 12 C 0.031 3.969 13 N -0.659 5.659 14 C 0.706 3.294 15 O -0.605 6.605 16 N -0.623 5.623 17 C 0.118 3.882 18 C -0.089 4.089 19 C -0.172 4.172 20 C 0.020 3.980 21 F -0.154 7.154 22 C 0.133 3.867 23 C -0.024 4.024 24 Cl -0.089 7.089 25 C -0.159 4.159 26 H 0.290 0.710 27 H 0.108 0.892 28 H 0.128 0.872 29 H 0.405 0.595 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -15.880 -4.432 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.178 4.178 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.182 1.182 7 C -0.519 4.519 8 H 0.100 0.900 9 C 0.084 3.916 10 C -0.239 4.239 11 C -0.099 4.099 12 C -0.064 4.064 13 N -0.308 5.308 14 C 0.409 3.591 15 O -0.485 6.485 16 N -0.361 5.361 17 C -0.004 4.004 18 C -0.127 4.127 19 C -0.192 4.192 20 C 0.001 3.999 21 F -0.133 7.133 22 C 0.009 3.991 23 C -0.052 4.052 24 Cl -0.061 7.061 25 C -0.179 4.179 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.146 0.854 29 H 0.244 0.756 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.130 0.870 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.012 -15.787 -4.302 17.113 hybrid contribution -0.771 0.904 -0.028 1.188 sum -5.783 -14.883 -4.329 16.543 Atomic orbital electron populations 1.69858 1.08865 1.30871 1.34980 1.26725 0.95515 1.04392 0.91175 0.85189 0.79092 0.75900 0.79496 1.18751 1.19315 1.18173 1.19767 0.98015 0.91873 1.42289 0.89995 1.17837 0.91225 0.93315 0.89194 1.20984 1.04711 0.92681 1.05543 1.20656 0.95105 0.98283 0.95892 1.16694 1.01117 0.83397 1.05197 1.42068 1.12084 1.04688 1.71977 1.15809 0.84314 0.80542 0.78473 1.90849 1.16561 1.84867 1.56237 1.47225 1.11018 1.08073 1.69794 1.21882 0.97117 0.80148 1.01236 1.20721 0.89970 1.01711 1.00276 1.22376 0.98508 0.98451 0.99823 1.19191 0.76974 0.98591 1.05180 1.91503 1.30252 1.96562 1.95005 1.20542 0.80585 0.96369 1.01558 1.20340 0.93220 0.94249 0.97432 1.98244 1.45469 1.98823 1.63535 1.20699 1.00123 0.95496 1.01617 0.89887 0.87426 0.85439 0.75592 0.88442 0.89229 0.85842 0.90451 0.84668 0.88857 0.86995 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.62 11.15 21.82 0.24 -41.37 16 2 C 0.04 1.85 5.13 85.23 0.44 2.28 16 3 Si 0.98 37.23 29.59 68.60 2.03 39.26 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.49 -25.72 9.02 23.39 0.21 -25.51 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.09 4.64 5.53 -21.28 -0.12 4.53 16 10 C -0.22 -10.93 9.74 22.48 0.22 -10.71 16 11 C -0.08 -3.72 8.65 22.13 0.19 -3.53 16 12 C 0.03 1.37 6.39 38.58 0.25 1.62 16 13 N -0.66 -23.49 4.99 -316.69 -1.58 -25.07 16 14 C 0.71 24.23 8.20 179.06 1.47 25.70 16 15 O -0.61 -25.08 12.97 -3.98 -0.05 -25.13 16 16 N -0.62 -15.20 2.97 -841.98 -2.50 -17.71 16 17 C 0.12 2.17 6.50 86.25 0.56 2.74 16 18 C -0.09 -1.23 6.28 29.65 0.19 -1.04 16 19 C -0.17 -2.63 9.69 26.67 0.26 -2.37 16 20 C 0.02 0.37 7.26 26.66 0.19 0.57 16 21 F -0.15 -3.15 17.19 44.97 0.77 -2.37 16 22 C 0.13 2.55 6.49 85.29 0.55 3.11 16 23 C -0.02 -1.07 6.30 22.18 0.14 -0.93 16 24 Cl -0.09 -3.31 27.85 -2.72 -0.08 -3.39 16 25 C -0.16 -8.14 8.37 22.50 0.19 -7.95 16 26 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 27 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 28 H 0.13 5.93 5.87 -2.91 -0.02 5.92 16 29 H 0.41 12.33 5.54 -92.71 -0.51 11.82 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.98 7.07 -2.39 -0.02 1.96 16 32 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 35 H 0.09 1.83 5.90 -2.39 -0.01 1.82 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.11 6.11 6.43 -2.92 -0.02 6.09 16 Total: -1.00 -62.15 327.25 4.20 -57.96 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.62 Total: 29.34 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.74 Total: -11.51 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -3.84 Total: -84.15 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.05 Total: -25.13 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.77 Total: -2.37 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 2.03 Total: 39.26 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.08 Total: -3.39 kcal Total: -62.15 4.20 -57.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335583250.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.414 kcal (2) G-P(sol) polarization free energy of solvation -62.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds