Wall clock time and date at job start Tue Mar 31 2020 14:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00026 * 2 1 4 4 H 1.48495 * 109.47050 * 274.74440 * 3 2 1 5 5 H 1.48494 * 109.47287 * 34.74808 * 3 2 1 6 6 H 1.48502 * 109.46945 * 154.74656 * 3 2 1 7 7 C 1.37881 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00034 * 4.72605 * 7 2 1 9 9 C 1.50701 * 119.99989 * 184.45454 * 7 2 1 10 10 C 1.53001 * 115.55113 * 84.88365 * 9 7 2 11 11 N 1.46501 * 109.46763 * 65.11162 * 10 9 7 12 12 C 1.34777 * 120.00094 * 175.02405 * 11 10 9 13 13 O 1.21566 * 119.99898 * 5.15587 * 12 11 10 14 14 C 1.47774 * 120.00124 * 185.15955 * 12 11 10 15 15 C 1.39624 * 120.15672 * 5.23684 * 14 12 11 16 16 C 1.37887 * 119.86773 * 179.76552 * 15 14 12 17 17 N 1.48024 * 119.91192 * 180.23031 * 16 15 14 18 18 O 1.21793 * 120.00184 * 180.25728 * 17 16 15 19 19 O 1.21795 * 119.99491 * 0.25747 * 17 16 15 20 20 C 1.38420 * 120.18441 * 0.49155 * 16 15 14 21 21 C 1.38272 * 120.31174 * 359.76230 * 20 16 15 22 22 C 1.38148 * 120.13161 * 0.02562 * 21 20 16 23 23 Cl 1.73608 * 120.09185 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.49480 * 299.22005 * 9 7 2 25 25 C 1.52997 * 117.49902 * 230.55922 * 9 7 2 26 26 H 0.96991 * 119.99826 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47568 * 185.10842 * 10 9 7 28 28 H 1.08999 * 109.47163 * 305.11789 * 10 9 7 29 29 H 0.97000 * 120.00207 * 355.02049 * 11 10 9 30 30 H 1.08007 * 120.06412 * 359.97404 * 15 14 12 31 31 H 1.08000 * 119.84871 * 179.73851 * 20 16 15 32 32 H 1.08007 * 119.93161 * 179.97438 * 21 20 16 33 33 H 1.09000 * 117.50319 * 359.97438 * 24 9 7 34 34 H 1.09004 * 117.49461 * 145.01695 * 24 9 7 35 35 H 1.08997 * 117.49479 * 214.97459 * 25 9 7 36 36 H 1.09002 * 117.49952 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3964 2.1042 -1.3952 5 1 1.5005 2.6216 0.7980 6 1 3.5933 1.4132 0.5973 7 6 2.0045 -1.1941 0.0005 8 1 1.4672 -2.1279 -0.0761 9 6 3.5081 -1.1961 0.1019 10 6 4.0739 -1.1268 1.5218 11 7 3.7084 -2.3425 2.2529 12 6 4.1840 -2.5494 3.4969 13 8 4.8389 -1.6865 4.0486 14 6 3.9096 -3.8253 4.1902 15 6 3.2527 -4.8599 3.5212 16 6 3.0039 -6.0496 4.1723 17 7 2.3121 -7.1490 3.4624 18 8 2.0873 -8.1988 4.0374 19 8 1.9677 -7.0036 2.3032 20 6 3.3944 -6.2169 5.4897 21 6 4.0408 -5.1954 6.1611 22 6 4.3005 -3.9996 5.5199 23 17 5.1114 -2.7175 6.3640 24 6 4.2917 -0.4895 -1.0061 25 6 4.2846 -2.0183 -0.9286 26 1 -0.4849 0.8400 -0.0004 27 1 5.1597 -1.0426 1.4766 28 1 3.6630 -0.2571 2.0345 29 1 3.1241 -2.9986 1.8418 30 1 2.9430 -4.7298 2.4947 31 1 3.1931 -7.1495 5.9957 32 1 4.3424 -5.3324 7.1890 33 1 3.7198 -0.0236 -1.8085 34 1 5.2105 0.0243 -0.7235 35 1 5.1986 -2.5095 -0.5951 36 1 3.7078 -2.5582 -1.6797 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404628428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:21 Heat of formation + Delta-G solvation = 1.341597 kcal Electronic energy + Delta-G solvation = -24580.095316 eV Core-core repulsion = 20673.250212 eV Total energy + Delta-G solvation = -3906.845104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.36815 -41.53641 -39.88598 -38.67941 -37.78434 -37.74267 -35.26062 -34.24590 -33.08793 -32.90225 -28.62840 -27.69533 -27.30765 -25.25088 -23.64865 -23.36172 -21.90793 -21.27191 -20.28693 -19.83548 -18.71576 -18.69301 -18.29577 -17.80059 -17.24104 -16.91166 -16.44749 -16.19415 -15.90207 -15.40719 -15.01018 -14.74395 -14.55258 -14.26196 -14.05518 -13.73781 -13.40401 -13.09632 -13.00514 -12.81254 -12.75162 -12.53565 -12.35457 -12.33886 -12.19195 -11.99736 -11.52148 -11.06657 -10.90212 -10.75855 -10.66974 -10.55028 -10.34645 -9.98756 -8.30969 -6.38243 -1.49485 -0.74558 -0.00461 0.15027 0.74159 1.33519 1.39728 1.42966 1.49790 1.95905 2.18488 2.35855 2.97560 3.04203 3.11176 3.23360 3.38041 3.50817 3.83450 3.97605 4.09643 4.20601 4.33463 4.35405 4.40649 4.50120 4.56861 4.79230 4.85042 4.86322 5.08318 5.16162 5.26111 5.38505 5.48654 5.67732 6.26934 6.38091 6.45083 6.71501 7.03023 7.32918 8.83454 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012111 B = 0.004264 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.405837 B = 6565.005668 C = 7922.613604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.928 3.072 4 H -0.272 1.272 5 H -0.304 1.304 6 H -0.231 1.231 7 C -0.482 4.482 8 H 0.044 0.956 9 C -0.042 4.042 10 C 0.167 3.833 11 N -0.696 5.696 12 C 0.545 3.455 13 O -0.547 6.547 14 C -0.134 4.134 15 C -0.012 4.012 16 C -0.059 4.059 17 N 0.030 4.970 18 O -0.131 6.131 19 O -0.203 6.203 20 C -0.002 4.002 21 C -0.096 4.096 22 C 0.050 3.950 23 Cl -0.010 7.010 24 C -0.187 4.187 25 C -0.155 4.155 26 H 0.264 0.736 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.408 0.592 30 H 0.160 0.840 31 H 0.202 0.798 32 H 0.206 0.794 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.682 -11.956 13.803 21.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.754 3.246 4 H -0.197 1.197 5 H -0.232 1.232 6 H -0.154 1.154 7 C -0.520 4.520 8 H 0.062 0.938 9 C -0.044 4.044 10 C 0.043 3.957 11 N -0.346 5.346 12 C 0.331 3.669 13 O -0.426 6.426 14 C -0.139 4.139 15 C -0.032 4.032 16 C -0.142 4.142 17 N 0.548 4.452 18 O -0.356 6.356 19 O -0.408 6.408 20 C -0.021 4.021 21 C -0.115 4.115 22 C 0.021 3.979 23 Cl 0.020 6.980 24 C -0.225 4.225 25 C -0.192 4.192 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.244 0.756 30 H 0.178 0.822 31 H 0.219 0.781 32 H 0.223 0.777 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.409 -10.507 14.472 21.767 hybrid contribution -0.891 0.668 -0.898 1.430 sum 11.518 -9.839 13.574 20.340 Atomic orbital electron populations 1.70033 1.08207 1.27912 1.52088 1.25731 0.95064 1.02580 0.93786 0.86038 0.80731 0.79298 0.78548 1.19720 1.23157 1.15390 1.20358 0.88854 0.92969 1.49793 0.93824 1.19474 0.92581 1.04490 0.87819 1.20953 0.97734 0.85745 0.91231 1.45841 1.49556 1.23935 1.15235 1.18138 0.80456 0.86587 0.81689 1.90842 1.41045 1.45172 1.65538 1.19639 1.04534 0.95018 0.94673 1.21137 0.91180 0.89374 1.01484 1.21138 1.08423 0.88894 0.95780 1.43722 0.98683 1.01882 1.00922 1.94489 1.57420 1.15347 1.68362 1.94650 1.56440 1.88194 1.01507 1.21615 0.89598 1.01650 0.89231 1.21531 0.98381 0.88465 1.03137 1.21713 0.92865 0.92133 0.91175 1.98473 1.75564 1.48636 1.75295 1.23026 1.01745 0.95919 1.01784 1.22894 1.01394 0.92699 1.02205 0.92695 0.91421 0.94019 0.75582 0.82233 0.78122 0.77667 0.90338 0.88118 0.87907 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.85 13.96 21.45 0.30 -56.55 16 2 C 0.03 1.47 5.47 84.66 0.46 1.94 16 3 Si 0.93 42.93 24.95 68.60 1.71 44.64 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 6 H -0.23 -9.71 5.68 99.48 0.56 -9.14 16 7 C -0.48 -25.01 9.18 25.60 0.24 -24.77 16 8 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 9 C -0.04 -1.74 0.82 -52.93 -0.04 -1.79 16 10 C 0.17 6.41 5.12 86.38 0.44 6.85 16 11 N -0.70 -23.97 5.41 -466.04 -2.52 -26.50 16 12 C 0.55 17.62 7.74 86.77 0.67 18.29 16 13 O -0.55 -20.08 14.01 -3.92 -0.05 -20.13 16 14 C -0.13 -3.32 5.88 -20.07 -0.12 -3.44 16 15 C -0.01 -0.27 9.02 22.52 0.20 -0.07 16 16 C -0.06 -1.18 6.84 36.33 0.25 -0.94 16 17 N 0.03 0.74 4.45 -46.55 -0.21 0.54 16 18 O -0.13 -3.05 18.44 18.89 0.35 -2.70 16 19 O -0.20 -6.12 18.44 18.89 0.35 -5.77 16 20 C 0.00 -0.02 9.55 22.32 0.21 0.19 16 21 C -0.10 -1.06 9.82 22.26 0.22 -0.85 16 22 C 0.05 0.98 6.35 22.60 0.14 1.13 16 23 Cl -0.01 -0.22 26.04 -2.72 -0.07 -0.29 16 24 C -0.19 -6.88 7.32 30.62 0.22 -6.65 16 25 C -0.15 -5.33 9.96 30.62 0.30 -5.03 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.07 2.37 8.09 -2.39 -0.02 2.35 16 28 H 0.04 1.80 7.05 -2.39 -0.02 1.78 16 29 H 0.41 13.52 6.43 -92.71 -0.60 12.93 16 30 H 0.16 3.89 6.02 -2.91 -0.02 3.87 16 31 H 0.20 1.06 7.60 -2.91 -0.02 1.04 16 32 H 0.21 0.59 8.06 -2.91 -0.02 0.56 16 33 H 0.08 3.09 7.14 -2.39 -0.02 3.07 16 34 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 35 H 0.10 2.96 8.14 -2.39 -0.02 2.95 16 36 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -68.17 329.84 3.47 -64.70 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.41 Total: 17.19 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 3.21 Total: -15.13 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -2.43 Total: -82.51 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: 0.64 Total: -28.60 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.71 Total: 44.64 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -0.07 Total: -0.29 kcal Total: -68.17 3.47 -64.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404628428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.038 kcal (2) G-P(sol) polarization free energy of solvation -68.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds