Wall clock time and date at job start Tue Mar 31 2020 14:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00048 * 2 1 4 4 H 1.48502 * 109.47468 * 270.00290 * 3 2 1 5 5 H 1.48504 * 109.47371 * 30.00027 * 3 2 1 6 6 H 1.48504 * 109.47198 * 149.99569 * 3 2 1 7 7 C 1.37877 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99950 * 181.48255 * 7 2 1 9 9 C 1.50698 * 120.00071 * 1.49083 * 7 2 1 10 10 C 1.53006 * 115.54946 * 324.77978 * 9 7 2 11 11 N 1.46505 * 109.46542 * 305.55180 * 10 9 7 12 12 C 1.34780 * 119.99416 * 184.74410 * 11 10 9 13 13 O 1.21557 * 120.00402 * 5.40280 * 12 11 10 14 14 C 1.47767 * 119.99539 * 185.40948 * 12 11 10 15 15 C 1.39625 * 120.15777 * 355.48902 * 14 12 11 16 16 C 1.37901 * 119.86748 * 179.72432 * 15 14 12 17 17 C 1.38429 * 120.17874 * 0.23752 * 16 15 14 18 18 N 1.48014 * 119.83809 * 180.02562 * 17 16 15 19 19 O 1.21802 * 120.00054 * 359.97438 * 18 17 16 20 20 O 1.21800 * 120.00011 * 180.02562 * 18 17 16 21 21 C 1.38265 * 120.31857 * 0.02562 * 17 16 15 22 22 C 1.38149 * 120.13114 * 0.02562 * 21 17 16 23 23 Cl 1.73597 * 120.09379 * 180.02562 * 22 21 17 24 24 C 1.53002 * 117.49947 * 110.44559 * 9 7 2 25 25 C 1.52993 * 117.50067 * 179.10801 * 9 7 2 26 26 H 0.97002 * 119.99795 * 5.01101 * 1 2 3 27 27 H 1.08994 * 109.47307 * 185.55249 * 10 9 7 28 28 H 1.09001 * 109.47085 * 65.54273 * 10 9 7 29 29 H 0.97001 * 120.00430 * 4.74509 * 11 10 9 30 30 H 1.08001 * 120.06685 * 0.02562 * 15 14 12 31 31 H 1.07994 * 119.90898 * 180.25789 * 16 15 14 32 32 H 1.08001 * 119.93261 * 179.97438 * 21 17 16 33 33 H 1.09005 * 117.49405 * 215.00144 * 24 9 7 34 34 H 1.08992 * 117.50330 * 0.02562 * 24 9 7 35 35 H 1.09004 * 117.50044 * 359.97438 * 25 9 7 36 36 H 1.08999 * 117.50010 * 144.97023 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0843 -1.1942 0.0247 9 6 1.2515 -2.4989 -0.0328 10 6 -0.0727 -2.5164 0.7335 11 7 0.1579 -2.0912 2.1164 12 6 -0.8526 -2.1208 3.0078 13 8 -1.9280 -2.5915 2.6922 14 6 -0.6532 -1.5808 4.3687 15 6 0.6057 -1.1256 4.7653 16 6 0.7838 -0.6175 6.0348 17 6 -0.2808 -0.5624 6.9179 18 7 -0.0814 -0.0151 8.2786 19 8 1.0175 0.3849 8.6191 20 8 -1.0159 0.0343 9.0582 21 6 -1.5295 -1.0162 6.5350 22 6 -1.7222 -1.5286 5.2667 23 17 -3.2906 -2.0974 4.7867 24 6 1.3376 -3.3318 -1.3134 25 6 2.0739 -3.7889 -0.0516 26 1 -0.4850 0.8369 -0.0734 27 1 -0.4827 -3.5263 0.7275 28 1 -0.7775 -1.8352 0.2567 29 1 1.0377 -1.7884 2.3905 30 1 1.4374 -1.1667 4.0774 31 1 1.7563 -0.2614 6.3408 32 1 -2.3556 -0.9706 7.2292 33 1 0.4509 -3.8922 -1.6099 34 1 1.9392 -2.9361 -2.1316 35 1 3.1597 -3.6938 -0.0403 36 1 1.6718 -4.6499 0.4823 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404649787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:08 Heat of formation + Delta-G solvation = 6.196667 kcal Electronic energy + Delta-G solvation = -24663.681545 eV Core-core repulsion = 20757.046972 eV Total energy + Delta-G solvation = -3906.634572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.40652 -41.42057 -39.72431 -38.39944 -37.82175 -37.67308 -35.01712 -34.15305 -33.29697 -32.40724 -28.80942 -27.68493 -26.93670 -24.46379 -24.07199 -22.95549 -21.61265 -21.16079 -20.65161 -19.88677 -19.23885 -18.74862 -18.01998 -17.24150 -16.75677 -16.59929 -16.26280 -16.12309 -15.88275 -15.39421 -15.03244 -14.68228 -14.53752 -14.12618 -13.61484 -13.32937 -13.11031 -12.94854 -12.92224 -12.81387 -12.57780 -12.52269 -12.36940 -12.32363 -12.27627 -12.02947 -11.46847 -10.94435 -10.90332 -10.73111 -10.61544 -10.35597 -10.15189 -9.69980 -7.96292 -6.20330 -1.61884 -0.45746 -0.12147 0.04626 0.84974 1.43106 1.49340 1.51004 1.55740 2.13650 2.37665 2.43158 3.03986 3.09870 3.30521 3.42047 3.50946 3.61039 3.69281 4.17520 4.26424 4.31077 4.43681 4.55042 4.58745 4.74928 4.81516 4.83139 4.98472 5.13120 5.15088 5.30407 5.53647 5.61386 5.74997 5.98368 6.37363 6.38042 6.69548 6.88290 7.31843 7.45423 8.90983 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.004220 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.184403 B = 6633.416046 C = 7756.562895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.041 3.959 3 Si 0.941 3.059 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.009 3.991 10 C 0.176 3.824 11 N -0.665 5.665 12 C 0.532 3.468 13 O -0.558 6.558 14 C -0.074 4.074 15 C -0.065 4.065 16 C -0.041 4.041 17 C -0.025 4.025 18 N 0.030 4.970 19 O -0.150 6.150 20 O -0.170 6.170 21 C -0.050 4.050 22 C -0.005 4.005 23 Cl -0.015 7.015 24 C -0.201 4.201 25 C -0.186 4.186 26 H 0.258 0.742 27 H 0.025 0.975 28 H 0.084 0.916 29 H 0.406 0.594 30 H 0.180 0.820 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -1.776 11.654 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.161 4.161 3 Si 0.768 3.232 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.053 3.947 11 N -0.312 5.312 12 C 0.317 3.683 13 O -0.438 6.438 14 C -0.078 4.078 15 C -0.085 4.085 16 C -0.060 4.060 17 C -0.109 4.109 18 N 0.549 4.451 19 O -0.369 6.369 20 O -0.384 6.384 21 C -0.070 4.070 22 C -0.034 4.034 23 Cl 0.015 6.985 24 C -0.240 4.240 25 C -0.223 4.223 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.243 0.757 30 H 0.198 0.802 31 H 0.210 0.790 32 H 0.198 0.802 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.042 -2.286 10.754 10.994 hybrid contribution 0.405 1.118 -0.107 1.194 sum 0.362 -1.168 10.646 10.716 Atomic orbital electron populations 1.70010 1.06712 1.26875 1.49281 1.25497 0.95242 1.01265 0.94063 0.85807 0.79237 0.80239 0.77895 1.21385 1.21749 1.18357 1.20717 0.92572 0.89247 1.51269 0.92051 1.19272 0.93574 0.90476 0.95827 1.20842 0.97799 0.95991 0.80098 1.45551 1.12352 1.63096 1.10242 1.18181 0.84766 0.80538 0.84820 1.90812 1.26105 1.47179 1.79751 1.20485 0.94368 0.98558 0.94371 1.21647 0.96275 0.94629 0.95903 1.21357 0.99831 0.93837 0.90940 1.21154 0.97310 1.08417 0.83971 1.43620 1.00333 0.98330 1.02777 1.94547 1.11964 1.48804 1.81583 1.94561 1.34534 1.60344 1.48933 1.20835 0.97058 0.94088 0.94983 1.20757 0.89179 1.00270 0.93197 1.98448 1.22005 1.86544 1.91525 1.22967 1.01951 1.06332 0.92755 1.22959 0.98360 0.99112 1.01882 0.93243 0.95732 0.89855 0.75695 0.80234 0.78995 0.80162 0.90754 0.90514 0.89636 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.87 10.23 21.45 0.22 -43.66 16 2 C 0.04 1.89 5.29 84.65 0.45 2.34 16 3 Si 0.94 37.44 29.54 68.60 2.03 39.47 16 4 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 7 C -0.50 -22.55 8.31 25.60 0.21 -22.34 16 8 H 0.06 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.01 0.39 2.06 -52.93 -0.11 0.28 16 10 C 0.18 7.55 4.64 86.38 0.40 7.95 16 11 N -0.66 -24.67 5.13 -466.03 -2.39 -27.06 16 12 C 0.53 19.35 7.75 86.76 0.67 20.02 16 13 O -0.56 -23.63 13.97 -3.89 -0.05 -23.68 16 14 C -0.07 -2.07 5.88 -20.07 -0.12 -2.19 16 15 C -0.07 -1.38 9.54 22.52 0.21 -1.17 16 16 C -0.04 -0.74 9.54 22.24 0.21 -0.53 16 17 C -0.03 -0.54 6.86 36.43 0.25 -0.29 16 18 N 0.03 0.71 4.45 -46.34 -0.21 0.51 16 19 O -0.15 -3.64 18.43 18.88 0.35 -3.29 16 20 O -0.17 -4.32 18.43 18.89 0.35 -3.97 16 21 C -0.05 -1.10 9.32 22.25 0.21 -0.89 16 22 C -0.01 -0.13 6.35 22.60 0.14 0.01 16 23 Cl -0.01 -0.44 26.03 -2.72 -0.07 -0.51 16 24 C -0.20 -7.94 9.96 30.62 0.30 -7.63 16 25 C -0.19 -6.69 9.92 30.62 0.30 -6.38 16 26 H 0.26 12.62 8.32 -92.71 -0.77 11.85 16 27 H 0.02 1.05 8.05 -2.39 -0.02 1.03 16 28 H 0.08 4.20 5.90 -2.39 -0.01 4.19 16 29 H 0.41 13.58 5.99 -92.71 -0.56 13.03 16 30 H 0.18 3.22 6.42 -2.91 -0.02 3.20 16 31 H 0.19 2.45 7.60 -2.91 -0.02 2.42 16 32 H 0.18 3.33 7.59 -2.91 -0.02 3.31 16 33 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 34 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 36 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -55.00 333.21 3.96 -51.04 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.60 Total: 21.99 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 3.14 Total: -10.83 kcal Atomic # 7 Polarization: -67.83 SS G_CDS: -2.38 Total: -70.21 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: 0.64 Total: -30.94 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -55.00 3.96 -51.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404649787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.238 kcal (2) G-P(sol) polarization free energy of solvation -55.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds