Wall clock time and date at job start Tue Mar 31 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00027 * 2 1 4 4 H 1.48497 * 109.47255 * 267.09652 * 3 2 1 5 5 H 1.48500 * 109.47100 * 27.09204 * 3 2 1 6 6 H 1.48494 * 109.47398 * 147.09165 * 3 2 1 7 7 C 1.37869 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00114 * 353.97069 * 7 2 1 9 9 C 1.50704 * 120.00070 * 173.97159 * 7 2 1 10 10 O 1.42902 * 110.28601 * 327.06563 * 9 7 2 11 11 C 1.54260 * 110.32313 * 204.93739 * 9 7 2 12 12 C 1.54379 * 105.15098 * 240.94543 * 11 9 7 13 13 N 1.48716 * 104.51622 * 336.27495 * 12 11 9 14 14 C 1.40349 * 111.01546 * 158.96387 * 13 12 11 15 15 N 1.34069 * 125.86436 * 244.17452 * 14 13 12 16 16 C 1.32483 * 109.24394 * 179.88677 * 15 14 13 17 17 S 1.76279 * 141.82818 * 180.02562 * 16 15 14 18 18 C 1.75778 * 90.69333 * 180.32711 * 17 16 15 19 19 C 1.30934 * 109.80319 * 359.97438 * 18 17 16 20 20 N 1.35061 * 108.95716 * 0.38204 * 16 15 14 21 21 C 1.34904 * 125.86135 * 64.49072 * 14 13 12 22 22 N 1.48741 * 126.51474 * 359.97438 * 21 14 13 23 23 O 1.21796 * 120.00102 * 270.00704 * 22 21 14 24 24 O 1.21799 * 119.99904 * 90.00146 * 22 21 14 25 25 C 1.48556 * 104.29399 * 39.35775 * 13 12 11 26 26 H 0.97002 * 119.99926 * 0.02562 * 1 2 3 27 27 H 0.96706 * 114.00139 * 294.05746 * 10 9 7 28 28 H 1.08998 * 110.32776 * 359.89919 * 11 9 7 29 29 H 1.09005 * 110.32091 * 122.00238 * 11 9 7 30 30 H 1.09005 * 110.40820 * 94.97794 * 12 11 9 31 31 H 1.08994 * 110.41669 * 217.41913 * 12 11 9 32 32 H 1.08001 * 125.09880 * 180.02562 * 18 17 16 33 33 H 1.07996 * 121.83944 * 179.97438 * 19 18 17 34 34 H 1.09001 * 110.41437 * 201.79868 * 25 13 12 35 35 H 1.09000 * 110.40966 * 79.35013 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5581 2.0110 -1.3982 5 1 1.4172 2.6697 0.6376 6 1 3.5146 1.4588 0.7606 7 6 2.0045 -1.1940 0.0005 8 1 1.4691 -2.1266 0.0992 9 6 3.5053 -1.1976 -0.1365 10 8 3.9297 -0.1141 -0.9659 11 6 3.9865 -2.5411 -0.7223 12 6 4.9060 -3.1469 0.3597 13 7 5.3704 -1.9770 1.1518 14 6 5.8117 -2.3736 2.4238 15 7 5.2553 -2.0242 3.5925 16 6 5.9331 -2.5841 4.5835 17 16 5.9684 -2.7088 6.3415 18 6 7.3852 -3.7461 6.2609 19 6 7.7298 -3.9299 5.0111 20 7 6.9524 -3.3037 4.0663 21 6 6.8722 -3.1668 2.6806 22 7 7.7831 -3.7791 1.6767 23 8 7.5324 -4.8790 1.2176 24 8 8.7798 -3.1805 1.3137 25 6 4.1731 -1.1034 1.2522 26 1 -0.4850 0.8401 -0.0004 27 1 3.6432 -0.1877 -1.8866 28 1 3.1375 -3.1986 -0.9091 29 1 4.5449 -2.3741 -1.6435 30 1 4.3460 -3.8356 0.9924 31 1 5.7522 -3.6558 -0.1017 32 1 7.8946 -4.1690 7.1141 33 1 8.5790 -4.5386 4.7379 34 1 4.4689 -0.0757 1.4628 35 1 3.4976 -1.4715 2.0245 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:26 Heat of formation + Delta-G solvation = 83.895892 kcal Electronic energy + Delta-G solvation = -25670.604984 eV Core-core repulsion = 21801.676161 eV Total energy + Delta-G solvation = -3868.928824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.43625 -41.90065 -39.19779 -37.13157 -36.65354 -35.11415 -32.34845 -31.76708 -31.07578 -28.96020 -28.35174 -26.17005 -24.98707 -24.26091 -22.57918 -21.50071 -20.63505 -19.95224 -19.26778 -18.97612 -17.91976 -17.64429 -17.40174 -16.73519 -16.49757 -15.91523 -15.24806 -15.00646 -14.67292 -14.24358 -13.99033 -13.63567 -13.15932 -12.70226 -12.17135 -12.11790 -11.94506 -11.82702 -11.64669 -11.61156 -11.49652 -11.24498 -11.15675 -11.08178 -10.74096 -10.51279 -10.25820 -10.06619 -9.91228 -9.19396 -8.62573 -8.56326 -8.42653 -8.28032 -6.19227 -4.32266 0.06166 0.18079 0.36520 0.74184 1.08117 1.41871 2.04985 2.19574 3.48002 3.53465 3.65871 3.73489 3.79895 4.27162 4.51454 4.54844 4.65951 4.92565 5.04018 5.19396 5.22649 5.36212 5.39464 5.68909 5.73850 5.97910 6.13696 6.23811 6.41676 6.43860 6.52624 6.72014 6.96990 7.09459 7.16529 7.46079 7.52686 8.14201 8.65449 8.82177 9.42529 10.89371 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015699 B = 0.004576 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.081901 B = 6117.699842 C = 7253.844291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.947 3.053 4 H -0.291 1.291 5 H -0.325 1.325 6 H -0.268 1.268 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.225 3.775 10 O -0.560 6.560 11 C -0.139 4.139 12 C 0.040 3.960 13 N -0.441 5.441 14 C 0.335 3.665 15 N -0.455 5.455 16 C 0.195 3.805 17 S 0.244 5.756 18 C -0.220 4.220 19 C 0.048 3.952 20 N -0.387 5.387 21 C -0.026 4.026 22 N 0.058 4.942 23 O -0.127 6.127 24 O -0.113 6.113 25 C 0.053 3.947 26 H 0.267 0.733 27 H 0.371 0.629 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.207 0.793 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.257 -9.046 12.628 21.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.782 3.218 4 H -0.218 1.218 5 H -0.257 1.257 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.098 0.902 9 C 0.185 3.815 10 O -0.367 6.367 11 C -0.178 4.178 12 C -0.086 4.086 13 N -0.160 5.160 14 C 0.105 3.895 15 N -0.184 5.184 16 C -0.172 4.172 17 S 0.494 5.506 18 C -0.357 4.357 19 C -0.081 4.081 20 N -0.072 5.072 21 C -0.219 4.219 22 N 0.593 4.407 23 O -0.349 6.349 24 O -0.340 6.340 25 C -0.072 4.072 26 H 0.076 0.924 27 H 0.219 0.781 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.224 0.776 33 H 0.201 0.799 34 H 0.107 0.893 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.902 -7.227 14.491 21.342 hybrid contribution 1.451 -0.947 -1.465 2.269 sum 15.353 -8.174 13.026 21.730 Atomic orbital electron populations 1.69965 1.06840 1.27842 1.47536 1.25137 0.94890 1.00534 0.92366 0.85732 0.77957 0.80015 0.78101 1.21824 1.25670 1.19451 1.21299 0.88397 0.95340 1.54299 0.90187 1.19851 0.93549 0.82124 0.86021 1.86155 1.79181 1.47650 1.23760 1.23118 0.98087 0.99613 0.96952 1.23315 0.98817 0.90721 0.95707 1.63310 1.34429 1.14254 1.04052 1.19249 0.89341 0.89497 0.91436 1.71066 1.26348 1.26061 0.94903 1.26538 0.90842 0.98153 1.01652 1.85118 1.27269 1.50690 0.87495 1.25203 1.03512 1.07380 0.99642 1.20454 0.99166 1.01407 0.87085 1.43153 1.23642 1.36713 1.03649 1.20618 1.03984 1.19129 0.78199 1.42291 0.99322 0.99582 0.99552 1.94564 1.77783 1.05037 1.57485 1.94579 1.14175 1.62876 1.62331 1.23777 0.86952 0.96763 0.99724 0.92394 0.78103 0.89744 0.91111 0.92484 0.90292 0.77605 0.79884 0.89267 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.08 2.13 5.46 -17.82 -0.10 2.04 16 3 Si 0.95 23.93 24.86 -169.99 -4.23 19.71 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.33 -8.40 7.11 56.52 0.40 -8.00 16 6 H -0.27 -6.82 5.24 56.52 0.30 -6.53 16 7 C -0.56 -14.89 8.58 -34.44 -0.30 -15.19 16 8 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 9 C 0.22 5.14 0.90 -90.39 -0.08 5.06 16 10 O -0.56 -12.60 8.38 -35.23 -0.30 -12.89 16 11 C -0.14 -2.69 6.40 -25.35 -0.16 -2.86 16 12 C 0.04 0.73 6.22 -2.09 -0.01 0.72 16 13 N -0.44 -8.97 5.50 -169.03 -0.93 -9.90 16 14 C 0.34 6.38 6.19 -153.77 -0.95 5.43 16 15 N -0.46 -8.40 10.09 -12.53 -0.13 -8.53 16 16 C 0.20 2.82 8.92 -88.68 -0.79 2.03 16 17 S 0.24 2.10 23.37 -107.50 -2.51 -0.42 16 18 C -0.22 -1.27 11.11 29.03 0.32 -0.95 16 19 C 0.05 0.42 11.26 -16.73 -0.19 0.23 16 20 N -0.39 -5.31 3.20 -59.97 -0.19 -5.51 16 21 C -0.03 -0.44 7.83 -139.83 -1.10 -1.53 16 22 N 0.06 0.97 4.25 33.78 0.14 1.11 16 23 O -0.13 -2.05 18.49 -29.46 -0.54 -2.60 16 24 O -0.11 -1.91 19.26 -29.46 -0.57 -2.48 16 25 C 0.05 1.20 4.92 -2.18 -0.01 1.19 16 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.37 7.21 8.99 45.56 0.41 7.62 16 28 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 29 H 0.07 1.25 7.98 -51.93 -0.41 0.83 16 30 H 0.06 1.05 7.98 -51.93 -0.41 0.63 16 31 H 0.08 1.37 7.20 -51.93 -0.37 0.99 16 32 H 0.21 0.29 8.06 -52.49 -0.42 -0.14 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.09 2.15 6.48 -51.93 -0.34 1.82 16 35 H 0.08 2.01 7.15 -51.93 -0.37 1.64 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -33.62 314.23 -9.50 -43.12 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -2.39 Total: 3.11 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.36 Total: -3.83 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.33 Total: -48.46 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -1.41 Total: -17.97 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.23 Total: 19.71 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.51 Total: -0.42 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.62 -9.50 -43.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.015 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds