Wall clock time and date at job start Tue Mar 31 2020 14:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47039 * 239.99580 * 3 2 1 5 5 H 1.48497 * 109.46992 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46610 * 119.99932 * 3 2 1 7 7 C 1.37873 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00370 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99984 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47325 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00339 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99450 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00373 * 179.97438 * 11 10 9 14 14 O 1.42893 * 109.47172 * 180.02562 * 13 11 10 15 15 C 1.34911 * 116.99823 * 180.02562 * 14 13 11 16 16 O 1.21619 * 120.00212 * 359.97438 * 15 14 13 17 17 C 1.46189 * 119.99803 * 180.02562 * 15 14 13 18 18 C 1.34961 * 120.00174 * 179.97438 * 17 15 14 19 19 C 1.47120 * 120.00105 * 179.97438 * 18 17 15 20 20 C 1.40345 * 120.57022 * 180.02562 * 19 18 17 21 21 C 1.38189 * 118.28212 * 179.97438 * 20 19 18 22 22 C 1.38595 * 119.32776 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 119.44442 * 179.97438 * 22 21 20 24 24 N 1.32051 * 121.10583 * 0.27627 * 22 21 20 25 25 C 1.31654 * 121.88895 * 359.43021 * 24 22 21 26 26 H 0.96992 * 120.00016 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47053 * 59.99552 * 9 7 2 28 28 H 1.09005 * 109.46839 * 299.99677 * 9 7 2 29 29 H 0.97003 * 119.99645 * 359.97438 * 10 9 7 30 30 H 1.08998 * 109.46502 * 59.99871 * 13 11 10 31 31 H 1.08992 * 109.46808 * 300.00173 * 13 11 10 32 32 H 1.08000 * 120.00265 * 359.97438 * 17 15 14 33 33 H 1.08000 * 119.99560 * 0.02562 * 18 17 15 34 34 H 1.07999 * 120.86003 * 0.02562 * 20 19 18 35 35 H 1.08002 * 120.33665 * 179.97438 * 21 20 19 36 36 H 1.08004 * 119.73434 * 180.26586 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5615 -5.1049 0.0020 13 6 2.7332 -6.0288 0.0005 14 8 2.0188 -7.2663 0.0006 15 6 2.7536 -8.3977 0.0006 16 8 3.9681 -8.3341 0.0001 17 6 2.0899 -9.7003 0.0002 18 6 2.8249 -10.8322 -0.0003 19 6 2.1570 -12.1430 -0.0001 20 6 2.9096 -13.3276 -0.0001 21 6 2.2335 -14.5329 0.0006 22 6 0.8476 -14.5338 0.0006 23 17 -0.0048 -16.0461 0.0008 24 7 0.1646 -13.4036 -0.0054 25 6 0.7616 -12.2302 -0.0006 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 3.1568 -3.4353 0.0002 30 1 3.3605 -5.9708 0.8900 31 1 3.3592 -5.9711 -0.8899 32 1 1.0114 -9.7569 0.0002 33 1 3.9034 -10.7756 0.0001 34 1 3.9892 -13.2981 0.0003 35 1 2.7796 -15.4646 0.0002 36 1 0.1686 -11.3275 -0.0015 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758705905.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:01 Heat of formation + Delta-G solvation = -77.921378 kcal Electronic energy + Delta-G solvation = -22281.641029 eV Core-core repulsion = 18371.358824 eV Total energy + Delta-G solvation = -3910.282205 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95589 -40.59322 -38.77027 -37.29121 -36.68347 -35.02579 -34.26959 -33.12965 -32.42796 -30.66631 -29.17964 -26.87304 -25.41280 -24.44178 -22.92720 -22.22040 -20.16667 -19.92896 -18.55626 -17.98388 -17.60936 -17.07182 -16.75143 -16.13232 -15.92910 -15.42619 -15.12216 -15.09527 -14.81857 -14.63279 -14.31700 -14.00355 -13.31092 -13.12568 -12.81356 -12.70907 -12.53395 -12.36328 -12.00001 -11.85500 -11.80887 -11.19603 -11.05059 -10.91951 -10.87610 -10.71645 -10.39800 -10.35967 -10.22913 -9.47147 -9.20595 -9.03038 -8.79321 -8.00934 -6.20658 -4.28401 -0.39580 0.48751 1.13819 1.22337 2.36066 2.60252 3.09906 3.15396 3.23383 3.28391 3.29767 3.73413 3.84215 4.05477 4.11802 4.21335 4.32131 4.37270 4.58199 4.77393 4.97167 5.08326 5.14026 5.15213 5.19874 5.20430 5.31106 5.63229 5.65585 5.83585 6.22322 7.04775 7.20456 7.28080 7.44110 7.52363 7.61267 7.90596 8.47688 8.69151 8.94060 9.38039 10.89384 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.001539 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.354827 B =18189.854602 C =18844.761579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.500 3.500 12 O -0.534 6.534 13 C 0.048 3.952 14 O -0.318 6.318 15 C 0.496 3.504 16 O -0.511 6.511 17 C -0.168 4.168 18 C -0.016 4.016 19 C -0.123 4.123 20 C -0.038 4.038 21 C -0.156 4.156 22 C 0.182 3.818 23 Cl -0.026 7.026 24 N -0.476 5.476 25 C 0.142 3.858 26 H 0.267 0.733 27 H 0.030 0.970 28 H 0.030 0.970 29 H 0.393 0.607 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.790 -30.457 0.007 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.030 4.030 14 O -0.232 6.232 15 C 0.342 3.658 16 O -0.402 6.402 17 C -0.186 4.186 18 C -0.035 4.035 19 C -0.125 4.125 20 C -0.063 4.063 21 C -0.176 4.176 22 C 0.018 3.982 23 Cl 0.003 6.997 24 N -0.186 5.186 25 C -0.016 4.016 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.226 0.774 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.165 0.835 33 H 0.163 0.837 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.083 -30.587 0.000 31.186 hybrid contribution 1.798 1.023 0.001 2.069 sum 7.881 -29.564 0.002 30.596 Atomic orbital electron populations 1.69960 1.06119 1.27546 1.48530 1.24948 0.94931 0.99476 0.94574 0.86445 0.79394 0.82182 0.78716 1.20036 1.21033 1.20039 1.21171 0.93303 0.90319 1.53723 0.91807 1.19180 0.88163 0.81513 0.98057 1.46364 1.11528 1.05349 1.72362 1.19881 0.89083 0.83988 0.78805 1.90713 1.16303 1.84537 1.49597 1.22517 0.94646 0.81316 1.04545 1.86243 1.39912 1.13846 1.83229 1.21178 0.85680 0.85677 0.73294 1.90886 1.14910 1.88280 1.46100 1.22267 1.01650 0.88858 1.05870 1.22214 1.00663 0.89281 0.91339 1.20025 0.94748 0.93896 1.03807 1.21850 1.01181 0.90406 0.92871 1.21826 0.92725 1.00287 1.02795 1.21919 0.89255 0.88856 0.98174 1.98431 1.78871 1.26276 1.96170 1.67035 1.41095 0.97583 1.12862 1.23209 0.91359 0.94857 0.92181 0.92299 0.95233 0.95220 0.77414 0.88637 0.88645 0.83526 0.83664 0.82876 0.83102 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.55 -14.53 9.28 -34.44 -0.32 -14.85 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 10 N -0.71 -14.35 5.55 -61.47 -0.34 -14.69 16 11 C 0.50 9.82 7.91 -10.98 -0.09 9.73 16 12 O -0.53 -12.87 16.50 -14.35 -0.24 -13.10 16 13 C 0.05 0.70 5.85 36.01 0.21 0.91 16 14 O -0.32 -4.76 9.65 -47.83 -0.46 -5.22 16 15 C 0.50 6.11 7.87 33.92 0.27 6.38 16 16 O -0.51 -7.05 16.00 -19.35 -0.31 -7.36 16 17 C -0.17 -1.43 9.54 -37.56 -0.36 -1.79 16 18 C -0.02 -0.11 9.48 -37.14 -0.35 -0.46 16 19 C -0.12 -0.76 5.88 -104.91 -0.62 -1.38 16 20 C -0.04 -0.17 9.94 -38.81 -0.39 -0.56 16 21 C -0.16 -0.81 9.86 -39.47 -0.39 -1.20 16 22 C 0.18 1.40 7.27 -17.33 -0.13 1.27 16 23 Cl -0.03 -0.19 29.10 -51.86 -1.51 -1.70 16 24 N -0.48 -4.33 10.32 -9.93 -0.10 -4.43 16 25 C 0.14 1.04 10.59 -17.04 -0.18 0.86 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 30 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 31 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 32 H 0.15 1.00 6.10 -52.49 -0.32 0.68 16 33 H 0.15 0.88 7.52 -52.49 -0.39 0.48 16 34 H 0.15 0.28 8.06 -52.49 -0.42 -0.14 16 35 H 0.15 0.41 8.06 -52.49 -0.42 -0.02 16 36 H 0.18 0.98 6.19 -52.48 -0.32 0.66 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -34.60 348.32 -7.91 -42.51 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -3.45 Total: 1.11 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -2.46 Total: 7.07 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.29 Total: -44.05 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -1.01 Total: -25.68 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.60 -7.91 -42.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758705905.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.414 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds