Wall clock time and date at job start Tue Mar 31 2020 14:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86802 * 119.99655 * 2 1 4 4 H 1.48499 * 109.47070 * 270.00212 * 3 2 1 5 5 H 1.48497 * 109.46870 * 30.00638 * 3 2 1 6 6 H 1.48501 * 109.46588 * 150.00230 * 3 2 1 7 7 C 1.37870 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47199 * 179.97438 * 9 7 2 11 11 C 1.34772 * 124.17877 * 89.97156 * 10 9 7 12 12 O 1.21237 * 127.15652 * 0.02562 * 11 10 9 13 13 C 1.51586 * 105.68689 * 180.02562 * 11 10 9 14 14 N 1.47314 * 103.58993 * 0.02562 * 13 11 10 15 15 C 1.46494 * 126.68491 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47400 * 90.00441 * 15 14 13 17 17 C 1.38165 * 120.02179 * 260.02233 * 16 15 14 18 18 C 1.38345 * 120.04808 * 179.97438 * 17 16 15 19 19 Cl 1.73598 * 119.95917 * 179.97438 * 18 17 16 20 20 C 1.38391 * 120.07845 * 0.02562 * 18 17 16 21 21 C 1.38121 * 120.04534 * 359.74143 * 20 18 17 22 22 C 1.38699 * 120.02594 * 79.99350 * 16 15 14 23 23 O 1.35925 * 120.03860 * 0.02562 * 22 16 15 24 24 C 1.33786 * 124.18195 * 270.27705 * 10 9 7 25 25 O 1.21542 * 123.76901 * 359.97438 * 24 10 9 26 26 H 0.96994 * 119.99886 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47611 * 59.99859 * 9 7 2 28 28 H 1.09000 * 109.46979 * 300.00059 * 9 7 2 29 29 H 1.09000 * 110.59993 * 241.47621 * 13 11 10 30 30 H 1.08994 * 110.59479 * 118.52474 * 13 11 10 31 31 H 1.09000 * 109.47619 * 329.99618 * 15 14 13 32 32 H 1.09001 * 109.47270 * 210.00189 * 15 14 13 33 33 H 1.08003 * 119.97573 * 359.95143 * 17 16 15 34 34 H 1.08000 * 119.97365 * 180.02562 * 20 18 17 35 35 H 1.07994 * 120.01963 * 180.28032 * 21 20 18 36 36 H 0.96705 * 113.99587 * 90.00069 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0027 11 6 2.6956 -4.1887 1.1117 12 8 2.4436 -3.8947 2.2606 13 6 3.6302 -5.2806 0.6300 14 7 3.5486 -5.1835 -0.8377 15 6 4.2613 -6.0148 -1.8108 16 6 3.4265 -7.2239 -2.1457 17 6 3.6995 -8.4395 -1.5484 18 6 2.9331 -9.5496 -1.8551 19 17 3.2785 -11.0760 -1.1038 20 6 1.8920 -9.4451 -2.7609 21 6 1.6130 -8.2305 -3.3565 22 6 2.3831 -7.1171 -3.0534 23 8 2.1130 -5.9220 -3.6420 24 6 2.6957 -4.1794 -1.1099 25 8 2.4030 -3.8284 -2.2361 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5564 -0.8920 28 1 0.6242 -2.5575 0.8880 29 1 3.2860 -6.2575 0.9698 30 1 4.6482 -5.0918 0.9704 31 1 5.2126 -6.3362 -1.3866 32 1 4.4444 -5.4374 -2.7170 33 1 4.5120 -8.5231 -0.8419 34 1 1.2946 -10.3127 -2.9988 35 1 0.7976 -8.1483 -4.0599 36 1 2.5879 -5.7760 -4.4716 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794790761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:58 Heat of formation + Delta-G solvation = -56.411276 kcal Electronic energy + Delta-G solvation = -25014.100397 eV Core-core repulsion = 21104.750940 eV Total energy + Delta-G solvation = -3909.349457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55369 -40.07656 -37.78686 -37.26841 -36.20310 -35.54987 -34.81385 -32.98631 -31.81962 -29.97856 -28.51137 -27.04080 -25.86466 -23.31459 -22.90720 -22.19110 -21.26329 -19.46328 -18.47452 -17.10250 -17.03936 -16.45539 -16.32824 -16.06525 -15.78881 -15.36384 -14.80210 -14.66267 -14.29149 -14.01603 -13.88737 -13.48638 -13.38224 -13.25299 -12.95161 -12.61881 -12.47910 -12.18222 -12.03315 -11.48086 -11.40401 -11.24718 -11.08891 -10.73167 -10.60336 -10.39528 -9.95416 -9.80600 -9.50951 -9.26253 -8.79152 -8.65975 -8.48862 -8.45916 -6.11068 -4.16057 0.75891 0.87535 1.84087 2.34245 2.70665 3.27409 3.30945 3.35787 3.39983 3.68314 3.84639 4.07243 4.39326 4.43008 4.45255 4.60896 4.76327 4.92623 5.08639 5.21591 5.25430 5.31228 5.38529 5.44870 5.55446 5.76818 5.87208 6.03301 6.24649 6.34196 6.66312 6.75317 7.17122 7.28152 7.65853 7.81908 8.04770 8.07088 8.18309 8.78633 8.94126 9.48541 10.98382 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.003275 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.937263 B = 8547.320386 C = 9110.001263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.558 5.558 11 C 0.517 3.483 12 O -0.481 6.481 13 C 0.062 3.938 14 N -0.635 5.635 15 C 0.205 3.795 16 C -0.133 4.133 17 C -0.080 4.080 18 C -0.053 4.053 19 Cl -0.073 7.073 20 C -0.089 4.089 21 C -0.140 4.140 22 C 0.142 3.858 23 O -0.464 6.464 24 C 0.697 3.303 25 O -0.515 6.515 26 H 0.266 0.734 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 -21.385 -6.486 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.134 3.866 10 N -0.301 5.301 11 C 0.303 3.697 12 O -0.352 6.352 13 C -0.065 4.065 14 N -0.376 5.376 15 C 0.083 3.917 16 C -0.135 4.135 17 C -0.099 4.099 18 C -0.079 4.079 19 Cl -0.044 7.044 20 C -0.108 4.108 21 C -0.159 4.159 22 C 0.095 3.905 23 O -0.274 6.274 24 C 0.399 3.601 25 O -0.386 6.386 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 8.345 -20.898 -6.035 23.298 hybrid contribution 0.654 0.602 -0.264 0.928 sum 9.000 -20.296 -6.299 23.078 Atomic orbital electron populations 1.69930 1.06010 1.27350 1.49669 1.24902 0.94949 0.99331 0.94642 0.86393 0.79691 0.82549 0.78200 1.20413 1.20952 1.19813 1.21251 0.93341 0.90189 1.52261 0.92273 1.19548 0.86609 0.80746 0.99732 1.46854 1.42883 1.34017 1.06333 1.20636 0.80877 0.82683 0.85513 1.90749 1.60450 1.65747 1.18298 1.22438 1.01966 1.00501 0.81563 1.47545 1.48755 1.35814 1.05467 1.19807 0.91822 0.87458 0.92649 1.20704 0.98198 0.95451 0.99197 1.20847 0.99457 0.90397 0.99198 1.20844 0.99564 0.87545 0.99971 1.98371 1.94712 1.30078 1.81228 1.20947 0.96141 0.98266 0.95484 1.21473 1.01184 0.91414 1.01833 1.18563 0.92314 0.85536 0.94054 1.85159 1.69281 1.31626 1.41306 1.15945 0.79306 0.79610 0.85189 1.90936 1.61863 1.65381 1.20373 0.92459 0.92912 0.93209 0.87499 0.87087 0.89036 0.88367 0.84508 0.84696 0.84374 0.75335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -15.43 9.39 -34.44 -0.32 -15.76 16 8 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 9 C 0.25 6.81 5.45 -5.19 -0.03 6.78 16 10 N -0.56 -12.62 2.59 -122.02 -0.32 -12.94 16 11 C 0.52 10.27 8.32 -10.55 -0.09 10.19 16 12 O -0.48 -10.96 17.76 5.59 0.10 -10.86 16 13 C 0.06 0.83 7.66 -4.31 -0.03 0.80 16 14 N -0.63 -9.33 3.00 -181.40 -0.54 -9.87 16 15 C 0.20 2.14 5.94 -5.20 -0.03 2.11 16 16 C -0.13 -1.38 5.48 -104.48 -0.57 -1.95 16 17 C -0.08 -0.72 9.45 -39.57 -0.37 -1.09 16 18 C -0.05 -0.49 6.32 -39.49 -0.25 -0.74 16 19 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 20 C -0.09 -0.80 9.82 -39.57 -0.39 -1.19 16 21 C -0.14 -1.39 9.99 -39.44 -0.39 -1.78 16 22 C 0.14 1.62 6.68 -39.23 -0.26 1.36 16 23 O -0.46 -6.09 10.31 -40.81 -0.42 -6.51 16 24 C 0.70 14.23 8.27 -88.03 -0.73 13.50 16 25 O -0.51 -11.83 14.77 -15.98 -0.24 -12.07 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.05 1.53 7.87 -51.93 -0.41 1.12 16 28 H 0.05 1.42 8.01 -51.93 -0.42 1.01 16 29 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 0.64 8.00 -51.93 -0.42 0.22 16 32 H 0.10 1.05 7.74 -51.93 -0.40 0.64 16 33 H 0.14 0.95 8.04 -52.48 -0.42 0.53 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.39 3.30 9.06 45.56 0.41 3.72 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -35.99 336.97 -8.58 -44.57 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -2.89 Total: -0.39 kcal Atomic # 6 Polarization: 17.56 SS G_CDS: -3.57 Total: 13.99 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.12 Total: -48.72 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -0.56 Total: -29.44 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.99 -8.58 -44.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794790761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.839 kcal (2) G-P(sol) polarization free energy of solvation -35.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds