Wall clock time and date at job start Tue Mar 31 2020 15:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99458 * 3 2 1 5 5 H 1.48500 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46885 * 119.99913 * 3 2 1 7 7 C 1.38644 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00143 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.35658 * 117.00062 * 185.06586 * 9 7 2 11 11 C 1.38765 * 120.13460 * 354.39767 * 10 9 7 12 12 C 1.38105 * 120.04888 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38015 * 120.27385 * 0.02562 * 13 12 11 15 15 C 1.39289 * 119.94274 * 359.97438 * 14 13 12 16 16 C 1.48289 * 120.15764 * 179.97438 * 15 14 13 17 17 C 1.39439 * 120.09629 * 130.02610 * 16 15 14 18 18 C 1.38011 * 119.98263 * 179.97438 * 17 16 15 19 19 C 1.38260 * 120.18431 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.20213 * 359.97438 * 19 18 17 21 21 O 1.35907 * 119.99772 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99576 * 359.97438 * 21 20 19 23 23 F 1.39898 * 109.47318 * 60.00378 * 22 21 20 24 24 F 1.39897 * 109.46999 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.47227 * 300.00220 * 22 21 20 26 26 C 1.38538 * 120.01145 * 359.76484 * 20 19 18 27 27 H 0.96997 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97757 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.84404 * 179.71922 * 12 11 10 30 30 H 1.08007 * 119.86489 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.02930 * 180.02562 * 14 13 12 32 32 H 1.07999 * 120.01179 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.90921 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.89990 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.08971 * 180.28262 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0695 -3.5037 0.1047 11 6 3.4556 -3.4404 0.0912 12 6 4.2019 -4.5975 0.1990 13 6 3.5740 -5.8253 0.3214 14 6 2.1962 -5.9038 0.3362 15 6 1.4325 -4.7439 0.2283 16 6 -0.0482 -4.8227 0.2431 17 6 -0.7837 -4.0002 1.0956 18 6 -2.1617 -4.0752 1.1072 19 6 -2.8165 -4.9647 0.2756 20 6 -2.0920 -5.7871 -0.5761 21 8 -2.7399 -6.6596 -1.3922 22 6 -4.1669 -6.6772 -1.3206 23 9 -4.6661 -5.4126 -1.6504 24 9 -4.6672 -7.6254 -2.2193 25 9 -4.5646 -7.0113 -0.0216 26 6 -0.7086 -5.7148 -0.5983 27 1 -0.4849 0.8400 -0.0004 28 1 3.9513 -2.4856 -0.0044 29 1 5.2804 -4.5448 0.1836 30 1 4.1649 -6.7255 0.4047 31 1 1.7105 -6.8636 0.4323 32 1 -0.2752 -3.3046 1.7468 33 1 -2.7302 -3.4372 1.7676 34 1 -3.8950 -5.0198 0.2886 35 1 -0.1439 -6.3509 -1.2637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222327567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:19 Heat of formation + Delta-G solvation = -169.860899 kcal Electronic energy + Delta-G solvation = -26680.849938 eV Core-core repulsion = 22194.864295 eV Total energy + Delta-G solvation = -4485.985643 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.42998 -48.17243 -48.00429 -40.04952 -39.14184 -37.27940 -36.34747 -32.45158 -32.01153 -30.20444 -29.24075 -28.16676 -25.91835 -25.42422 -23.17580 -22.46990 -21.35156 -21.00666 -19.22633 -19.12804 -18.86248 -18.05432 -17.13381 -16.31356 -15.89211 -15.16669 -15.11475 -14.84074 -14.81251 -14.56121 -14.47921 -14.41948 -14.31455 -14.16341 -14.09402 -13.80634 -13.66232 -13.36667 -13.02221 -12.83049 -12.62128 -11.78222 -11.77005 -11.43600 -11.34958 -11.06173 -10.90123 -10.82037 -10.56679 -10.51870 -9.46164 -8.96469 -8.83554 -8.28861 -7.91393 -7.23978 -6.53472 -4.12256 1.36286 1.57045 1.68529 2.19279 2.30066 2.88816 3.08570 3.09150 3.12014 3.81859 3.88063 3.91386 4.13905 4.49623 4.93294 4.98872 5.01646 5.12526 5.32745 5.46925 5.58688 5.71686 5.75134 5.82111 5.97507 6.18018 6.26572 6.35174 6.56113 6.61135 6.72447 6.82270 6.92593 7.05807 7.12205 7.27205 7.28987 7.37522 7.69651 7.89714 8.91198 9.57986 10.62785 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003919 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.092109 B = 7143.308964 C = 8745.997016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.044 3.956 3 Si 0.939 3.061 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.397 4.397 8 H 0.092 0.908 9 O -0.162 6.162 10 C 0.167 3.833 11 C -0.233 4.233 12 C -0.066 4.066 13 C -0.216 4.216 14 C -0.056 4.056 15 C -0.143 4.143 16 C 0.027 3.973 17 C -0.091 4.091 18 C -0.077 4.077 19 C -0.201 4.201 20 C 0.090 3.910 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.165 7.165 24 F -0.138 7.138 25 F -0.168 7.168 26 C -0.122 4.122 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.070 -10.530 0.404 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.473 4.473 8 H 0.109 0.891 9 O -0.064 6.064 10 C 0.112 3.888 11 C -0.252 4.252 12 C -0.084 4.084 13 C -0.235 4.235 14 C -0.074 4.074 15 C -0.144 4.144 16 C 0.026 3.974 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.219 4.219 20 C 0.049 3.951 21 O -0.233 6.233 22 C 0.512 3.488 23 F -0.147 7.147 24 F -0.119 7.119 25 F -0.150 7.150 26 C -0.140 4.140 27 H 0.081 0.919 28 H 0.147 0.853 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.491 -10.410 0.250 11.341 hybrid contribution 0.162 0.918 -0.112 0.939 sum -4.329 -9.493 0.138 10.434 Atomic orbital electron populations 1.70031 1.05856 1.27910 1.44918 1.25264 0.95836 0.98750 0.96313 0.85805 0.78778 0.79799 0.79234 1.19485 1.20243 1.19463 1.21304 0.91851 0.80758 1.53337 0.89056 1.83981 1.34074 1.11233 1.77153 1.19277 0.90069 0.87355 0.92068 1.21126 0.93461 0.99210 1.11434 1.20847 0.98622 0.92366 0.96607 1.20534 0.94115 0.97078 1.11739 1.20731 0.93499 0.95920 0.97223 1.17730 0.90471 0.91449 1.14760 1.18391 0.92241 0.93392 0.93342 1.21361 0.93363 0.97605 0.98604 1.20821 0.94476 0.96486 0.97685 1.21356 0.99682 1.00365 1.00510 1.18473 0.91769 0.91996 0.92866 1.86375 1.15227 1.59863 1.61806 1.19359 0.80368 0.74634 0.74432 1.93306 1.87970 1.41068 1.92392 1.93275 1.86048 1.64640 1.67973 1.93281 1.91047 1.92382 1.38306 1.20366 0.89497 1.02266 1.01892 0.91865 0.85267 0.87335 0.87339 0.86720 0.84799 0.85344 0.85713 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.64 13.67 55.48 0.76 -22.88 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 19.65 29.55 -169.99 -5.02 14.63 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.40 -10.44 9.49 30.88 0.29 -10.14 16 8 H 0.09 2.23 5.21 -52.49 -0.27 1.95 16 9 O -0.16 -4.29 8.11 0.35 0.00 -4.28 16 10 C 0.17 3.82 6.56 -38.74 -0.25 3.56 16 11 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 12 C -0.07 -1.15 10.03 -39.55 -0.40 -1.54 16 13 C -0.22 -3.53 10.03 -39.59 -0.40 -3.93 16 14 C -0.06 -0.96 9.51 -39.27 -0.37 -1.33 16 15 C -0.14 -2.88 5.49 -104.73 -0.57 -3.45 16 16 C 0.03 0.52 5.27 -104.93 -0.55 -0.04 16 17 C -0.09 -1.79 8.78 -39.22 -0.34 -2.14 16 18 C -0.08 -1.32 10.03 -39.66 -0.40 -1.72 16 19 C -0.20 -3.28 8.25 -39.37 -0.32 -3.61 16 20 C 0.09 1.52 6.48 -39.26 -0.25 1.26 16 21 O -0.31 -4.75 10.37 -19.45 -0.20 -4.96 16 22 C 0.60 7.92 3.42 101.05 0.35 8.27 16 23 F -0.17 -2.26 15.56 2.25 0.04 -2.22 16 24 F -0.14 -1.65 17.53 2.25 0.04 -1.61 16 25 F -0.17 -2.12 15.56 2.25 0.04 -2.09 16 26 C -0.12 -2.14 9.46 -39.08 -0.37 -2.51 16 27 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 31 H 0.11 1.68 8.04 -52.49 -0.42 1.26 16 32 H 0.13 2.83 7.68 -52.49 -0.40 2.42 16 33 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.13 1.81 5.08 -52.49 -0.27 1.54 16 35 H 0.13 2.11 8.04 -52.49 -0.42 1.69 16 LS Contribution 321.30 15.07 4.84 4.84 Total: -1.00 -27.90 321.30 -6.06 -33.95 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.49 Total: 6.04 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -4.06 Total: -21.43 kcal Atomic # 7 Polarization: -23.64 SS G_CDS: 0.76 Total: -22.88 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.20 Total: -9.24 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.90 -6.06 -33.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222327567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.907 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds