Wall clock time and date at job start Tue Mar 31 2020 15:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86797 * 119.99754 * 2 1 4 4 H 1.48497 * 109.47066 * 239.99458 * 3 2 1 5 5 H 1.48500 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46885 * 119.99913 * 3 2 1 7 7 C 1.38644 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00143 * 180.02562 * 7 2 1 9 9 O 1.34822 * 120.00140 * 0.02562 * 7 2 1 10 10 C 1.35658 * 117.00062 * 185.06586 * 9 7 2 11 11 C 1.38765 * 120.13460 * 354.39767 * 10 9 7 12 12 C 1.38105 * 120.04888 * 180.02562 * 11 10 9 13 13 C 1.38444 * 120.32402 * 359.97438 * 12 11 10 14 14 C 1.38015 * 120.27385 * 0.02562 * 13 12 11 15 15 C 1.39289 * 119.94274 * 359.97438 * 14 13 12 16 16 C 1.48289 * 120.15764 * 179.97438 * 15 14 13 17 17 C 1.39439 * 120.09629 * 130.02610 * 16 15 14 18 18 C 1.38011 * 119.98263 * 179.97438 * 17 16 15 19 19 C 1.38260 * 120.18431 * 0.02562 * 18 17 16 20 20 C 1.38799 * 120.20213 * 359.97438 * 19 18 17 21 21 O 1.35907 * 119.99772 * 180.02562 * 20 19 18 22 22 C 1.42900 * 116.99576 * 359.97438 * 21 20 19 23 23 F 1.39898 * 109.47318 * 60.00378 * 22 21 20 24 24 F 1.39897 * 109.46999 * 180.02562 * 22 21 20 25 25 F 1.39896 * 109.47227 * 300.00220 * 22 21 20 26 26 C 1.38538 * 120.01145 * 359.76484 * 20 19 18 27 27 H 0.96997 * 119.99720 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97757 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.84404 * 179.71922 * 12 11 10 30 30 H 1.08007 * 119.86489 * 179.97438 * 13 12 11 31 31 H 1.07998 * 120.02930 * 180.02562 * 14 13 12 32 32 H 1.07999 * 120.01179 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.90921 * 180.02562 * 18 17 16 34 34 H 1.08002 * 119.89990 * 179.97438 * 19 18 17 35 35 H 1.07998 * 120.08971 * 180.28262 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2124 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0695 -3.5037 0.1047 11 6 3.4556 -3.4404 0.0912 12 6 4.2019 -4.5975 0.1990 13 6 3.5740 -5.8253 0.3214 14 6 2.1962 -5.9038 0.3362 15 6 1.4325 -4.7439 0.2283 16 6 -0.0482 -4.8227 0.2431 17 6 -0.7837 -4.0002 1.0956 18 6 -2.1617 -4.0752 1.1072 19 6 -2.8165 -4.9647 0.2756 20 6 -2.0920 -5.7871 -0.5761 21 8 -2.7399 -6.6596 -1.3922 22 6 -4.1669 -6.6772 -1.3206 23 9 -4.6661 -5.4126 -1.6504 24 9 -4.6672 -7.6254 -2.2193 25 9 -4.5646 -7.0113 -0.0216 26 6 -0.7086 -5.7148 -0.5983 27 1 -0.4849 0.8400 -0.0004 28 1 3.9513 -2.4856 -0.0044 29 1 5.2804 -4.5448 0.1836 30 1 4.1649 -6.7255 0.4047 31 1 1.7105 -6.8636 0.4323 32 1 -0.2752 -3.3046 1.7468 33 1 -2.7302 -3.4372 1.7676 34 1 -3.8950 -5.0198 0.2886 35 1 -0.1439 -6.3509 -1.2637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222327567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:18 Heat of formation + Delta-G solvation = -183.861228 kcal Electronic energy + Delta-G solvation = -26681.457038 eV Core-core repulsion = 22194.864295 eV Total energy + Delta-G solvation = -4486.592743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.48779 -49.20095 -49.07478 -41.42392 -40.65852 -38.71465 -37.89605 -34.28199 -33.49029 -31.58188 -30.74517 -29.65931 -27.35431 -26.99698 -24.58126 -23.85646 -22.90121 -22.37821 -20.48542 -20.20027 -20.03141 -19.77655 -18.70115 -17.71764 -17.26258 -16.57443 -16.40879 -16.27728 -15.99458 -15.98055 -15.85125 -15.53909 -15.47820 -15.42555 -15.25227 -15.20282 -15.16962 -14.79689 -14.40642 -14.28262 -14.11265 -13.53178 -13.23506 -12.91043 -12.81746 -12.53388 -12.40995 -12.36005 -12.15119 -11.97688 -11.17033 -10.77355 -10.29996 -9.68672 -9.38003 -8.84279 -8.43077 -6.09690 -0.06738 0.27932 0.41844 0.70668 0.81558 1.36706 1.46175 1.51021 1.75864 2.18327 2.58095 2.73983 2.87554 2.96612 3.21292 3.48385 3.62340 3.65987 3.96097 4.09997 4.21990 4.27617 4.31302 4.45095 4.58915 4.71492 4.88916 4.96170 5.07461 5.15284 5.17995 5.30137 5.38636 5.52691 5.67356 5.75182 5.78199 5.92712 6.05109 6.23509 7.01153 7.80205 8.77509 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.003919 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.092109 B = 7143.308964 C = 8745.997016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.013 4.013 3 Si 1.010 2.990 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.099 0.901 9 O -0.208 6.208 10 C 0.130 3.870 11 C -0.249 4.249 12 C -0.065 4.065 13 C -0.192 4.192 14 C -0.056 4.056 15 C -0.150 4.150 16 C 0.009 3.991 17 C -0.114 4.114 18 C -0.079 4.079 19 C -0.196 4.196 20 C 0.095 3.905 21 O -0.315 6.315 22 C 0.608 3.392 23 F -0.167 7.167 24 F -0.127 7.127 25 F -0.162 7.162 26 C -0.123 4.123 27 H 0.271 0.729 28 H 0.121 0.879 29 H 0.145 0.855 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -12.785 0.154 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.212 4.212 3 Si 0.830 3.170 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.113 6.113 10 C 0.078 3.922 11 C -0.268 4.268 12 C -0.082 4.082 13 C -0.211 4.211 14 C -0.074 4.074 15 C -0.152 4.152 16 C 0.008 3.992 17 C -0.132 4.132 18 C -0.097 4.097 19 C -0.215 4.215 20 C 0.053 3.947 21 O -0.235 6.235 22 C 0.517 3.483 23 F -0.149 7.149 24 F -0.109 7.109 25 F -0.144 7.144 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.123 0.877 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.443 -12.725 0.001 13.182 hybrid contribution -0.103 1.249 -0.027 1.254 sum -3.547 -11.476 -0.026 12.011 Atomic orbital electron populations 1.70177 1.07654 1.28579 1.48023 1.26390 0.96736 1.02208 0.95909 0.84761 0.77495 0.74981 0.79737 1.18528 1.19895 1.18336 1.21742 0.92458 0.81592 1.53453 0.88350 1.83966 1.35138 1.11966 1.80210 1.19859 0.91327 0.87484 0.93541 1.21278 0.92933 1.00421 1.12216 1.21268 1.00393 0.91494 0.95091 1.21115 0.94030 0.98218 1.07695 1.21174 0.94115 0.96109 0.95976 1.18118 0.91333 0.91583 1.14118 1.18490 0.92290 0.94236 0.94142 1.21257 0.94532 0.97977 0.99452 1.21018 0.93677 0.96846 0.98123 1.21575 1.00712 0.99521 0.99661 1.18486 0.91773 0.91847 0.92624 1.86353 1.16496 1.59276 1.61355 1.19245 0.79499 0.74730 0.74781 1.93309 1.87855 1.41347 1.92436 1.93306 1.85702 1.64194 1.67662 1.93297 1.90853 1.92309 1.37954 1.20460 0.90139 1.01974 1.01572 0.92026 0.86174 0.83693 0.82915 0.83508 0.87743 0.83636 0.83614 0.83176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.32 13.67 21.61 0.30 -53.03 16 2 C -0.01 -0.73 5.49 84.83 0.47 -0.27 16 3 Si 1.01 41.69 29.55 68.60 2.03 43.71 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.42 -23.18 9.49 67.92 0.64 -22.54 16 8 H 0.10 5.05 5.21 -2.91 -0.02 5.04 16 9 O -0.21 -11.70 8.11 -21.65 -0.18 -11.87 16 10 C 0.13 6.13 6.56 22.81 0.15 6.28 16 11 C -0.25 -10.32 9.16 22.36 0.20 -10.11 16 12 C -0.06 -2.06 10.03 22.29 0.22 -1.83 16 13 C -0.19 -5.48 10.03 22.27 0.22 -5.26 16 14 C -0.06 -1.77 9.51 22.47 0.21 -1.56 16 15 C -0.15 -6.10 5.49 -19.93 -0.11 -6.20 16 16 C 0.01 0.34 5.27 -20.06 -0.11 0.24 16 17 C -0.11 -4.71 8.78 22.51 0.20 -4.52 16 18 C -0.08 -2.78 10.03 22.22 0.22 -2.55 16 19 C -0.20 -6.25 8.25 22.41 0.18 -6.07 16 20 C 0.09 3.06 6.48 22.48 0.15 3.20 16 21 O -0.31 -8.93 10.37 -92.50 -0.96 -9.89 16 22 C 0.61 14.69 3.42 113.37 0.39 15.07 16 23 F -0.17 -4.28 15.56 44.97 0.70 -3.58 16 24 F -0.13 -2.75 17.53 44.97 0.79 -1.96 16 25 F -0.16 -3.72 15.56 44.97 0.70 -3.02 16 26 C -0.12 -4.23 9.46 22.59 0.21 -4.02 16 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.12 5.06 5.64 -2.91 -0.02 5.05 16 29 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 31 H 0.15 3.70 8.04 -2.91 -0.02 3.68 16 32 H 0.10 4.87 7.68 -2.91 -0.02 4.84 16 33 H 0.15 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.15 3.97 5.08 -2.91 -0.01 3.95 16 35 H 0.15 4.50 8.04 -2.91 -0.02 4.47 16 Total: -1.00 -64.63 321.30 7.80 -56.83 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 1.16 Total: 22.94 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: 3.26 Total: -40.13 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.30 Total: -53.03 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -1.13 Total: -21.76 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 2.19 Total: -8.56 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Total: -64.63 7.80 -56.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222327567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.029 kcal (2) G-P(sol) polarization free energy of solvation -64.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds