Wall clock time and date at job start Tue Mar 31 2020 14:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99845 * 2 1 4 4 C 1.38269 * 121.63965 * 180.25805 * 3 2 1 5 5 C 1.35063 * 114.72355 * 180.19794 * 4 3 2 6 6 C 1.50697 * 127.19778 * 179.84418 * 5 4 3 7 7 N 1.46499 * 109.47338 * 89.70728 * 6 5 4 8 8 C 1.39925 * 120.00008 * 179.97438 * 7 6 5 9 9 C 1.38705 * 120.08171 * 359.73139 * 8 7 6 10 10 C 1.38217 * 120.02024 * 179.69756 * 9 8 7 11 11 C 1.38533 * 120.17273 * 0.59729 * 10 9 8 12 12 F 1.35095 * 119.92158 * 179.70139 * 11 10 9 13 13 C 1.38353 * 120.15736 * 359.67728 * 11 10 9 14 14 C 1.38725 * 119.98180 * 0.02562 * 13 11 10 15 15 O 1.35802 * 120.08516 * 180.02562 * 14 13 11 16 16 C 1.34798 * 116.99933 * 354.40282 * 15 14 13 17 17 H 1.07997 * 120.00289 * 5.06512 * 16 15 14 18 18 C 1.38632 * 119.99843 * 185.06297 * 16 15 14 19 19 N 1.31580 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47471 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00084 * 20 18 16 23 23 H 1.48505 * 109.47003 * 240.00020 * 20 18 16 24 24 S 1.72026 * 105.60030 * 359.58188 * 5 4 3 25 25 N 1.30338 * 121.64067 * 359.97214 * 3 2 1 26 26 H 1.09002 * 109.47353 * 300.00449 * 1 2 3 27 27 H 1.09002 * 109.46750 * 60.00613 * 1 2 3 28 28 H 1.08994 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08001 * 122.63974 * 0.02580 * 4 3 2 30 30 H 1.08997 * 109.47571 * 329.70812 * 6 5 4 31 31 H 1.08997 * 109.46871 * 209.70693 * 6 5 4 32 32 H 0.97005 * 119.99842 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.99162 * 359.97373 * 9 8 7 34 34 H 1.07999 * 119.91548 * 180.27673 * 10 9 8 35 35 H 1.08006 * 120.00806 * 180.02562 * 13 11 10 36 36 H 0.96995 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4243 1.3232 -0.0053 5 6 3.8881 2.5917 -0.0003 6 6 5.3284 3.0352 -0.0008 7 7 5.7948 3.1785 -1.3822 8 6 7.1093 3.5838 -1.6382 9 6 7.9706 3.8557 -0.5855 10 6 9.2707 4.2499 -0.8399 11 6 9.7141 4.3867 -2.1452 12 9 10.9841 4.7781 -2.3880 13 6 8.8595 4.1228 -3.2008 14 6 7.5551 3.7208 -2.9529 15 8 6.7147 3.4607 -3.9874 16 6 7.1718 3.7232 -5.2281 17 1 8.1930 4.0443 -5.3706 18 6 6.3309 3.5810 -6.3211 19 7 5.0866 3.1903 -6.1474 20 14 6.9645 3.9440 -8.0404 21 1 8.3870 4.3638 -7.9654 22 1 6.8518 2.7227 -8.8777 23 1 6.1583 5.0348 -8.6449 24 16 2.4908 3.5952 -0.0009 25 7 1.3679 2.3243 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 4.0785 0.4639 -0.0101 30 1 5.9377 2.2918 0.5131 31 1 5.4138 3.9929 0.5127 32 1 5.1921 2.9931 -2.1193 33 1 7.6266 3.7551 0.4333 34 1 9.9412 4.4569 -0.0189 35 1 9.2078 4.2298 -4.2175 36 1 4.4983 3.0904 -6.9121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363905885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:25 Heat of formation + Delta-G solvation = -30.630293 kcal Electronic energy + Delta-G solvation = -23821.193363 eV Core-core repulsion = 19927.378349 eV Total energy + Delta-G solvation = -3893.815013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.09872 -40.21625 -39.26818 -37.26953 -36.51651 -34.91342 -32.35431 -31.65924 -29.32573 -28.76266 -27.71539 -25.69071 -25.43754 -23.12544 -21.77885 -21.12869 -20.17266 -18.35618 -18.22189 -17.71681 -17.34292 -16.38279 -16.18636 -15.87693 -15.19240 -14.92808 -14.87265 -14.55050 -14.28031 -14.19001 -13.85583 -13.56960 -13.43119 -13.30409 -13.17152 -12.53413 -12.16222 -12.13372 -11.98963 -11.50933 -11.44963 -11.21986 -11.14311 -10.84982 -10.76275 -10.59115 -10.43883 -9.74435 -9.58607 -9.36711 -8.89705 -8.37160 -7.80436 -6.56408 -6.51249 -4.07425 0.53769 1.29923 1.66133 2.05280 2.17595 2.36794 3.02504 3.09813 3.12417 3.17664 3.89235 4.00327 4.40459 4.45579 4.91527 4.93299 4.99839 5.03177 5.07517 5.09716 5.22959 5.36071 5.46202 5.53203 5.63246 5.74521 5.78173 6.03229 6.07232 6.33395 6.51022 6.74293 6.96393 6.97345 7.04723 7.20686 7.52917 7.83923 7.94549 8.24915 8.94599 9.59189 10.65791 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.003831 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.629261 B = 7307.039377 C = 9522.473255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.296 6.296 3 C 0.309 3.691 4 C -0.188 4.188 5 C -0.163 4.163 6 C 0.209 3.791 7 N -0.743 5.743 8 C 0.150 3.850 9 C -0.143 4.143 10 C -0.197 4.197 11 C 0.090 3.910 12 F -0.157 7.157 13 C -0.241 4.241 14 C 0.125 3.875 15 O -0.175 6.175 16 C -0.387 4.387 17 H 0.093 0.907 18 C 0.041 3.959 19 N -0.861 5.861 20 Si 0.940 3.060 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 S 0.311 5.689 25 N -0.533 5.533 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.166 0.834 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.412 0.588 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.139 0.861 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 -2.356 13.129 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.202 6.202 3 C 0.096 3.904 4 C -0.225 4.225 5 C -0.292 4.292 6 C 0.082 3.918 7 N -0.380 5.380 8 C 0.050 3.950 9 C -0.167 4.167 10 C -0.217 4.217 11 C 0.070 3.930 12 F -0.136 7.136 13 C -0.263 4.263 14 C 0.070 3.930 15 O -0.079 6.079 16 C -0.463 4.463 17 H 0.110 0.890 18 C -0.164 4.164 19 N -0.496 5.496 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 S 0.461 5.539 25 N -0.374 5.374 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.118 0.882 29 H 0.183 0.817 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.249 0.751 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.359 -1.160 13.135 14.640 hybrid contribution 1.124 -1.335 -1.278 2.163 sum -5.235 -2.495 11.858 13.200 Atomic orbital electron populations 1.22953 0.76972 1.03414 1.02494 1.86282 1.22786 1.22777 1.88328 1.20094 0.90026 0.85087 0.95225 1.20254 0.92642 0.99141 1.10420 1.25348 1.02799 0.97484 1.03600 1.19460 0.85298 1.00727 0.86302 1.44245 1.10761 1.77707 1.05240 1.17011 0.85368 1.02198 0.90453 1.19929 0.93015 1.07126 0.96605 1.20289 0.96856 1.10255 0.94334 1.17253 0.78967 1.03139 0.93670 1.91383 1.37634 1.89125 1.95434 1.20802 0.93946 1.12154 0.99380 1.18571 0.89661 0.97181 0.87631 1.83894 1.38018 1.72790 1.13194 1.21344 0.98173 1.47094 0.79704 0.88968 1.25254 0.95057 0.96580 0.99477 1.70030 1.05021 1.42940 1.31641 0.85652 0.79012 0.78388 0.80463 1.19005 1.20149 1.20132 1.84048 0.89350 1.12301 1.68221 1.76437 1.26845 1.01469 1.32617 0.92316 0.92102 0.88180 0.81659 0.90320 0.90869 0.75149 0.86057 0.86428 0.84365 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.47 101.05 1.06 1.41 16 2 O -0.30 -3.79 10.54 -19.59 -0.21 -4.00 16 3 C 0.31 4.28 7.42 -18.17 -0.13 4.15 16 4 C -0.19 -2.43 10.15 -40.70 -0.41 -2.84 16 5 C -0.16 -2.06 5.96 -35.44 -0.21 -2.27 16 6 C 0.21 2.60 5.49 -5.20 -0.03 2.57 16 7 N -0.74 -12.63 5.72 -59.64 -0.34 -12.97 16 8 C 0.15 2.86 6.67 -83.52 -0.56 2.30 16 9 C -0.14 -2.34 9.31 -39.42 -0.37 -2.70 16 10 C -0.20 -3.36 10.02 -39.48 -0.40 -3.76 16 11 C 0.09 1.77 7.29 -39.43 -0.29 1.48 16 12 F -0.16 -3.01 17.26 2.25 0.04 -2.97 16 13 C -0.24 -5.25 9.14 -39.36 -0.36 -5.61 16 14 C 0.13 2.84 6.67 -38.93 -0.26 2.58 16 15 O -0.18 -4.63 9.00 -0.02 0.00 -4.63 16 16 C -0.39 -10.39 9.49 30.88 0.29 -10.10 16 17 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.24 13.67 55.48 0.76 -23.49 16 20 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 S 0.31 4.00 23.71 -107.50 -2.55 1.45 16 25 N -0.53 -7.61 11.14 28.92 0.32 -7.28 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.08 0.86 7.96 -51.93 -0.41 0.45 16 31 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 32 H 0.41 7.98 7.83 -40.82 -0.32 7.66 16 33 H 0.12 1.57 6.73 -52.49 -0.35 1.21 16 34 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.14 3.07 5.64 -52.48 -0.30 2.78 16 36 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -29.87 335.62 -7.02 -36.89 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.32 Total: 8.57 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.76 Total: -11.81 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.74 Total: -43.74 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.21 Total: -8.63 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -2.55 Total: 1.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.87 -7.02 -36.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363905885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.257 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds