Wall clock time and date at job start Tue Mar 31 2020 14:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 116.99845 * 2 1 4 4 C 1.38269 * 121.63965 * 180.25805 * 3 2 1 5 5 C 1.35063 * 114.72355 * 180.19794 * 4 3 2 6 6 C 1.50697 * 127.19778 * 179.84418 * 5 4 3 7 7 N 1.46499 * 109.47338 * 89.70728 * 6 5 4 8 8 C 1.39925 * 120.00008 * 179.97438 * 7 6 5 9 9 C 1.38705 * 120.08171 * 359.73139 * 8 7 6 10 10 C 1.38217 * 120.02024 * 179.69756 * 9 8 7 11 11 C 1.38533 * 120.17273 * 0.59729 * 10 9 8 12 12 F 1.35095 * 119.92158 * 179.70139 * 11 10 9 13 13 C 1.38353 * 120.15736 * 359.67728 * 11 10 9 14 14 C 1.38725 * 119.98180 * 0.02562 * 13 11 10 15 15 O 1.35802 * 120.08516 * 180.02562 * 14 13 11 16 16 C 1.34798 * 116.99933 * 354.40282 * 15 14 13 17 17 H 1.07997 * 120.00289 * 5.06512 * 16 15 14 18 18 C 1.38632 * 119.99843 * 185.06297 * 16 15 14 19 19 N 1.31580 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99961 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47471 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47290 * 120.00084 * 20 18 16 23 23 H 1.48505 * 109.47003 * 240.00020 * 20 18 16 24 24 S 1.72026 * 105.60030 * 359.58188 * 5 4 3 25 25 N 1.30338 * 121.64067 * 359.97214 * 3 2 1 26 26 H 1.09002 * 109.47353 * 300.00449 * 1 2 3 27 27 H 1.09002 * 109.46750 * 60.00613 * 1 2 3 28 28 H 1.08994 * 109.46856 * 180.02562 * 1 2 3 29 29 H 1.08001 * 122.63974 * 0.02580 * 4 3 2 30 30 H 1.08997 * 109.47571 * 329.70812 * 6 5 4 31 31 H 1.08997 * 109.46871 * 209.70693 * 6 5 4 32 32 H 0.97005 * 119.99842 * 0.02562 * 7 6 5 33 33 H 1.08001 * 119.99162 * 359.97373 * 9 8 7 34 34 H 1.07999 * 119.91548 * 180.27673 * 10 9 8 35 35 H 1.08006 * 120.00806 * 180.02562 * 13 11 10 36 36 H 0.96995 * 120.00104 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4243 1.3232 -0.0053 5 6 3.8881 2.5917 -0.0003 6 6 5.3284 3.0352 -0.0008 7 7 5.7948 3.1785 -1.3822 8 6 7.1093 3.5838 -1.6382 9 6 7.9706 3.8557 -0.5855 10 6 9.2707 4.2499 -0.8399 11 6 9.7141 4.3867 -2.1452 12 9 10.9841 4.7781 -2.3880 13 6 8.8595 4.1228 -3.2008 14 6 7.5551 3.7208 -2.9529 15 8 6.7147 3.4607 -3.9874 16 6 7.1718 3.7232 -5.2281 17 1 8.1930 4.0443 -5.3706 18 6 6.3309 3.5810 -6.3211 19 7 5.0866 3.1903 -6.1474 20 14 6.9645 3.9440 -8.0404 21 1 8.3870 4.3638 -7.9654 22 1 6.8518 2.7227 -8.8777 23 1 6.1583 5.0348 -8.6449 24 16 2.4908 3.5952 -0.0009 25 7 1.3679 2.3243 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 4.0785 0.4639 -0.0101 30 1 5.9377 2.2918 0.5131 31 1 5.4138 3.9929 0.5127 32 1 5.1921 2.9931 -2.1193 33 1 7.6266 3.7551 0.4333 34 1 9.9412 4.4569 -0.0189 35 1 9.2078 4.2298 -4.2175 36 1 4.4983 3.0904 -6.9121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363905885.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:24 Heat of formation + Delta-G solvation = -51.371231 kcal Electronic energy + Delta-G solvation = -23822.092757 eV Core-core repulsion = 19927.378349 eV Total energy + Delta-G solvation = -3894.714408 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.61241 -41.21137 -40.84564 -38.54578 -37.86244 -36.20530 -34.25832 -32.83654 -30.89514 -29.94900 -28.74899 -27.32037 -26.84647 -24.25797 -23.25519 -22.59702 -21.21450 -19.99041 -19.49433 -19.13722 -18.45604 -17.70980 -17.36889 -17.15032 -16.91293 -16.44184 -16.00085 -15.83040 -15.71592 -15.52071 -15.30855 -15.07729 -14.83254 -14.48009 -14.38177 -13.83445 -13.64680 -13.45038 -13.15598 -13.06549 -12.87518 -12.53421 -12.17203 -12.13791 -12.11510 -12.00534 -11.79123 -11.49431 -10.79646 -10.74548 -10.71990 -9.40491 -9.37118 -8.46117 -8.04419 -6.08208 -0.49045 0.29937 0.51837 0.64162 0.65377 1.33476 1.35847 1.41737 1.51950 2.11726 2.16536 2.68478 2.80003 3.12885 3.36711 3.44322 3.68570 3.94004 4.05138 4.12522 4.28726 4.29769 4.31282 4.51211 4.54853 4.61105 4.71111 4.77683 4.79279 5.05444 5.08631 5.13683 5.35697 5.47239 5.50302 5.96527 6.01578 6.05809 6.50223 6.72151 7.00325 7.77196 8.75757 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.003831 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.629261 B = 7307.039377 C = 9522.473255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.306 6.306 3 C 0.299 3.701 4 C -0.193 4.193 5 C -0.160 4.160 6 C 0.206 3.794 7 N -0.746 5.746 8 C 0.155 3.845 9 C -0.129 4.129 10 C -0.164 4.164 11 C 0.066 3.934 12 F -0.156 7.156 13 C -0.248 4.248 14 C 0.083 3.917 15 O -0.217 6.217 16 C -0.405 4.405 17 H 0.094 0.906 18 C -0.015 4.015 19 N -0.913 5.913 20 Si 1.009 2.991 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.270 1.270 24 S 0.314 5.686 25 N -0.553 5.553 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.179 0.821 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.397 0.603 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.465 -2.262 15.633 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.086 3.914 4 C -0.230 4.230 5 C -0.289 4.289 6 C 0.081 3.919 7 N -0.380 5.380 8 C 0.053 3.947 9 C -0.152 4.152 10 C -0.183 4.183 11 C 0.045 3.955 12 F -0.136 7.136 13 C -0.269 4.269 14 C 0.030 3.970 15 O -0.123 6.123 16 C -0.482 4.482 17 H 0.111 0.889 18 C -0.213 4.213 19 N -0.551 5.551 20 Si 0.829 3.171 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.195 1.195 24 S 0.464 5.536 25 N -0.395 5.395 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.196 0.804 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.231 0.769 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.137 0.863 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.204 -1.063 15.712 16.585 hybrid contribution 0.847 -1.357 -1.732 2.358 sum -4.357 -2.420 13.980 14.841 Atomic orbital electron populations 1.23185 0.75451 1.05384 1.02200 1.86274 1.24375 1.22414 1.88169 1.20354 0.90565 0.85347 0.95137 1.20461 0.92578 0.99791 1.10168 1.25395 1.02876 0.97269 1.03406 1.19806 0.85221 1.02902 0.83995 1.44455 1.09789 1.76926 1.06786 1.17308 0.86633 1.01114 0.89690 1.20467 0.92027 1.04785 0.97971 1.20833 0.97434 1.06027 0.94045 1.17390 0.78974 1.04837 0.94292 1.91381 1.37391 1.89232 1.95546 1.20849 0.94411 1.12163 0.99501 1.19083 0.89983 0.99407 0.88542 1.83862 1.39388 1.75538 1.13545 1.21678 0.98461 1.47286 0.80748 0.88913 1.26326 0.95214 0.96425 1.03359 1.70152 1.06482 1.45739 1.32719 0.84656 0.78742 0.78408 0.75277 1.18084 1.19462 1.19466 1.83980 0.89474 1.12003 1.68138 1.76383 1.27775 1.02002 1.33291 0.91938 0.93028 0.85130 0.80365 0.87518 0.88324 0.76913 0.81132 0.82366 0.86269 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.47 113.37 1.19 1.78 16 2 O -0.31 -7.64 10.54 -93.00 -0.98 -8.62 16 3 C 0.30 8.11 7.42 84.92 0.63 8.74 16 4 C -0.19 -4.75 10.15 21.55 0.22 -4.53 16 5 C -0.16 -3.76 5.96 24.95 0.15 -3.61 16 6 C 0.21 4.42 5.49 85.63 0.47 4.89 16 7 N -0.75 -24.24 5.72 -342.60 -1.96 -26.20 16 8 C 0.15 5.61 6.67 38.26 0.26 5.87 16 9 C -0.13 -3.61 9.31 22.38 0.21 -3.40 16 10 C -0.16 -4.83 10.02 22.34 0.22 -4.61 16 11 C 0.07 2.47 7.29 22.37 0.16 2.63 16 12 F -0.16 -5.74 17.26 44.97 0.78 -4.97 16 13 C -0.25 -10.95 9.14 22.41 0.20 -10.75 16 14 C 0.08 3.82 6.67 22.69 0.15 3.97 16 15 O -0.22 -12.04 9.00 -23.00 -0.21 -12.24 16 16 C -0.41 -22.89 9.49 67.91 0.64 -22.25 16 17 H 0.09 4.99 5.21 -2.91 -0.02 4.97 16 18 C -0.02 -0.83 5.49 84.82 0.47 -0.37 16 19 N -0.91 -53.89 13.67 21.61 0.30 -53.60 16 20 Si 1.01 42.77 29.55 68.60 2.03 44.80 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 S 0.31 7.81 23.71 -56.49 -1.34 6.47 16 25 N -0.55 -15.60 11.14 -176.08 -1.96 -17.56 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.18 3.80 8.06 -2.91 -0.02 3.77 16 30 H 0.11 1.78 7.96 -2.39 -0.02 1.76 16 31 H 0.10 1.69 7.94 -2.39 -0.02 1.67 16 32 H 0.40 15.58 7.83 -92.70 -0.73 14.85 16 33 H 0.17 3.15 6.73 -2.91 -0.02 3.13 16 34 H 0.16 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 36 H 0.27 14.79 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -69.04 335.62 2.05 -66.98 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.43 Total: 26.57 kcal Atomic # 6 Polarization: -26.61 SS G_CDS: 4.97 Total: -21.64 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -3.63 Total: -97.36 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.19 Total: -20.86 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.78 Total: -4.97 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -1.34 Total: 6.47 kcal Total: -69.04 2.05 -66.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363905885.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.613 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds