Wall clock time and date at job start Tue Mar 31 2020 14:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86796 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47120 * 269.99969 * 3 2 1 5 5 H 1.48493 * 109.47245 * 30.00196 * 3 2 1 6 6 H 1.48500 * 109.47129 * 150.00054 * 3 2 1 7 7 C 1.38799 * 119.99395 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00546 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99572 * 179.97438 * 7 2 1 10 10 C 1.81005 * 99.99864 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46811 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47142 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47237 * 179.97438 * 12 11 10 14 14 C 1.34933 * 116.99789 * 179.97438 * 13 12 11 15 15 O 1.21647 * 120.00112 * 0.02562 * 14 13 12 16 16 C 1.46355 * 119.99783 * 180.02562 * 14 13 12 17 17 C 1.37847 * 125.96598 * 179.97438 * 16 14 13 18 18 C 1.39845 * 106.75509 * 179.78007 * 17 16 14 19 19 C 1.36496 * 107.10521 * 0.34897 * 18 17 16 20 20 C 1.47819 * 125.64307 * 179.90290 * 19 18 17 21 21 N 1.34233 * 126.70773 * 359.74955 * 20 19 18 22 22 N 1.28984 * 107.24671 * 179.97438 * 21 20 19 23 23 N 1.28716 * 109.00756 * 359.97438 * 22 21 20 24 24 H 0.96992 * 125.31269 * 180.02562 * 23 22 21 25 25 N 1.28869 * 109.37266 * 359.97438 * 23 22 21 26 26 O 1.34329 * 108.71310 * 359.64276 * 19 18 17 27 27 H 0.97000 * 119.99680 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47095 * 59.99728 * 10 9 7 29 29 H 1.09001 * 109.46788 * 300.00238 * 10 9 7 30 30 H 1.08995 * 109.47837 * 59.99786 * 11 10 9 31 31 H 1.09001 * 109.47315 * 299.99518 * 11 10 9 32 32 H 1.08995 * 109.47076 * 59.99141 * 12 11 10 33 33 H 1.09001 * 109.46937 * 299.99586 * 12 11 10 34 34 H 1.08000 * 126.62651 * 0.02779 * 17 16 14 35 35 H 1.07992 * 126.44470 * 180.21863 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 -0.0001 10 6 4.0865 -2.9847 0.0001 11 6 5.5956 -3.2365 0.0002 12 6 5.8613 -4.7433 -0.0002 13 8 7.2708 -4.9784 -0.0007 14 6 7.6771 -6.2651 -0.0005 15 8 6.8557 -7.1624 -0.0005 16 6 9.1061 -6.5812 -0.0004 17 6 9.6556 -7.8454 0.0002 18 6 11.0444 -7.6813 -0.0051 19 6 11.2901 -6.3386 -0.0008 20 6 12.6267 -5.7075 -0.0020 21 7 13.8118 -6.3380 -0.0027 22 7 14.7280 -5.4301 -0.0042 23 7 14.1692 -4.2706 -0.0050 24 1 14.6388 -3.4220 -0.0065 25 7 12.8884 -4.4133 -0.0045 26 8 10.1161 -5.6857 -0.0011 27 1 -0.4850 0.8401 0.0004 28 1 3.6432 -3.4319 -0.8895 29 1 3.6438 -3.4315 0.8904 30 1 6.0386 -2.7894 0.8901 31 1 6.0386 -2.7897 -0.8898 32 1 5.4184 -5.1900 -0.8902 33 1 5.4183 -5.1905 0.8897 34 1 9.1176 -8.7818 0.0003 35 1 11.7834 -8.4687 -0.0095 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592681417.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:35 Heat of formation + Delta-G solvation = 28.092145 kcal Electronic energy + Delta-G solvation = -22654.468814 eV Core-core repulsion = 18783.120158 eV Total energy + Delta-G solvation = -3871.348656 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.072 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.68118 -43.93989 -41.57309 -38.16202 -35.74252 -34.99998 -34.72792 -34.67926 -34.30769 -31.37643 -28.41950 -27.82688 -26.32995 -25.77967 -23.87033 -22.93024 -22.78676 -21.78602 -20.40621 -19.85196 -19.45335 -18.50922 -18.43180 -18.10965 -17.73225 -17.23315 -17.10794 -16.21055 -15.93679 -15.31215 -15.03133 -14.88913 -14.36291 -14.28292 -14.24083 -14.23068 -14.01417 -13.58566 -13.38664 -13.06283 -12.65425 -12.65179 -12.48062 -12.42574 -12.38930 -12.38348 -12.04250 -11.73758 -11.55521 -11.25387 -11.16872 -10.60419 -9.81705 -9.01049 -8.52219 -6.24332 -0.83628 -0.06496 0.45463 0.71512 1.05084 1.25567 1.32418 1.44500 1.46665 1.53544 1.64715 1.81224 2.24368 2.53340 2.66061 2.85731 3.06033 3.55046 3.60812 3.82027 3.83200 3.90334 4.09268 4.11891 4.20566 4.28743 4.44382 4.45163 4.63809 4.75712 4.97112 4.98775 5.09620 5.23908 5.43378 5.49620 5.69441 6.10414 6.40049 6.88313 6.91442 8.60668 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002016 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.996721 B =13883.015509 C =15354.264091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.037 3.963 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.228 1.228 7 C -0.524 4.524 8 H 0.053 0.947 9 S -0.211 6.211 10 C -0.073 4.073 11 C -0.089 4.089 12 C 0.075 3.925 13 O -0.345 6.345 14 C 0.554 3.446 15 O -0.498 6.498 16 C -0.062 4.062 17 C -0.084 4.084 18 C -0.134 4.134 19 C 0.082 3.918 20 C 0.230 3.770 21 N -0.258 5.258 22 N -0.039 5.039 23 N -0.191 5.191 24 H 0.499 0.501 25 N -0.285 5.285 26 O -0.148 6.148 27 H 0.277 0.723 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.200 0.800 35 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.987 -13.907 0.094 34.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.151 1.151 7 C -0.671 4.671 8 H 0.071 0.929 9 S 0.017 5.983 10 C -0.221 4.221 11 C -0.128 4.128 12 C 0.000 4.000 13 O -0.261 6.261 14 C 0.399 3.601 15 O -0.388 6.388 16 C -0.114 4.114 17 C -0.103 4.103 18 C -0.155 4.155 19 C 0.027 3.973 20 C -0.050 4.050 21 N -0.132 5.132 22 N -0.034 5.034 23 N -0.043 5.043 24 H 0.359 0.641 25 N -0.138 5.138 26 O -0.042 6.042 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.217 0.783 35 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 32.845 -12.805 0.096 35.253 hybrid contribution -1.796 0.263 -0.046 1.815 sum 31.049 -12.542 0.050 33.487 Atomic orbital electron populations 1.70042 1.07639 1.29124 1.49092 1.25791 0.95446 1.02821 0.92760 0.85710 0.80785 0.78601 0.80238 1.18588 1.18795 1.15104 1.22342 0.89985 0.96365 1.58438 0.92902 1.83861 1.07612 1.09178 1.97604 1.22965 0.98613 0.96015 1.04515 1.21164 0.93111 0.93496 1.05002 1.22812 0.76402 0.97023 1.03812 1.86200 1.28941 1.27596 1.83317 1.19250 0.86343 0.81363 0.73147 1.90975 1.52775 1.48019 1.47020 1.21169 0.84885 0.88874 1.16439 1.22598 0.93691 0.97029 0.96974 1.22156 0.96535 0.94251 1.02599 1.18504 0.80620 0.90226 1.07941 1.21916 0.92179 0.85938 1.04925 1.76173 0.95320 1.23768 1.17951 1.78929 1.21715 0.88347 1.14459 1.47800 1.01691 1.11590 1.43171 0.64109 1.75224 0.98531 1.19531 1.20551 1.84165 1.13355 1.36382 1.70297 0.91390 0.90771 0.90737 0.89748 0.89746 0.90133 0.90124 0.78292 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.97 21.65 0.30 -56.26 16 2 C 0.04 2.14 5.50 84.86 0.47 2.61 16 3 Si 0.93 43.79 27.74 68.60 1.90 45.69 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.23 -10.33 6.74 99.48 0.67 -9.66 16 7 C -0.52 -30.66 10.04 67.95 0.68 -29.97 16 8 H 0.05 3.36 8.03 -2.91 -0.02 3.34 16 9 S -0.21 -9.97 19.41 -56.49 -1.10 -11.06 16 10 C -0.07 -2.67 5.67 71.98 0.41 -2.27 16 11 C -0.09 -2.58 5.59 30.59 0.17 -2.40 16 12 C 0.07 1.92 5.38 71.98 0.39 2.31 16 13 O -0.34 -9.00 10.12 -57.07 -0.58 -9.58 16 14 C 0.55 13.56 7.91 69.93 0.55 14.11 16 15 O -0.50 -13.58 16.64 19.35 0.32 -13.25 16 16 C -0.06 -1.25 7.21 24.29 0.18 -1.08 16 17 C -0.08 -1.14 10.65 22.57 0.24 -0.90 16 18 C -0.13 -1.59 10.78 22.25 0.24 -1.35 16 19 C 0.08 1.42 7.24 24.40 0.18 1.60 16 20 C 0.23 3.90 8.20 137.06 1.12 5.03 16 21 N -0.26 -4.08 12.53 -52.44 -0.66 -4.74 16 22 N -0.04 -0.49 13.46 37.02 0.50 0.01 16 23 N -0.19 -1.61 7.89 37.02 0.29 -1.32 16 24 H 0.50 -0.69 8.96 -347.52 -3.11 -3.81 16 25 N -0.28 -4.42 12.41 -52.39 -0.65 -5.07 16 26 O -0.15 -3.19 10.69 -9.24 -0.10 -3.29 16 27 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.07 2.72 8.14 -2.40 -0.02 2.70 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 33 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 34 H 0.20 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.20 1.19 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -74.76 340.23 2.87 -71.89 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -1.99 Total: -0.70 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 4.62 Total: -12.32 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -0.21 Total: -67.38 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.35 Total: -26.12 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.90 Total: 45.69 kcal Atomic # 16 Polarization: -9.97 SS G_CDS: -1.10 Total: -11.06 kcal Total: -74.76 2.87 -71.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592681417.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.982 kcal (2) G-P(sol) polarization free energy of solvation -74.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds