Wall clock time and date at job start Tue Mar 31 2020 13:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75332 * 124.35003 * 2 1 4 4 C 1.75901 * 92.16784 * 179.97438 * 3 2 1 5 5 N 1.34647 * 130.71279 * 179.97438 * 4 3 2 6 6 C 1.31116 * 121.63294 * 180.02562 * 5 4 3 7 7 S 1.76200 * 119.20224 * 180.02562 * 6 5 4 8 8 C 1.76202 * 100.00162 * 359.97438 * 7 6 5 9 9 H 1.08006 * 119.99533 * 359.97438 * 8 7 6 10 10 C 1.38732 * 120.00102 * 179.72694 * 8 7 6 11 11 N 1.31567 * 119.99870 * 180.27492 * 10 8 7 12 12 Si 1.86798 * 119.99925 * 0.27392 * 10 8 7 13 13 H 1.48505 * 109.46927 * 90.00253 * 12 10 8 14 14 H 1.48496 * 109.47172 * 209.99922 * 12 10 8 15 15 H 1.48503 * 109.47240 * 330.00234 * 12 10 8 16 16 N 1.36608 * 121.59470 * 0.27736 * 6 5 4 17 17 C 1.46502 * 119.87074 * 179.70347 * 16 6 5 18 18 C 1.53002 * 109.47395 * 121.15453 * 17 16 6 19 19 C 1.52990 * 109.47094 * 241.15729 * 17 16 6 20 20 C 1.34728 * 120.26395 * 359.45718 * 16 6 5 21 21 O 1.21888 * 120.57480 * 180.26913 * 20 16 6 22 22 C 1.39418 * 109.61011 * 0.02562 * 4 3 2 23 23 C 1.32032 * 124.34859 * 179.97438 * 2 1 3 24 24 C 1.50702 * 122.59223 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.46637 * 270.01837 * 1 2 3 26 26 H 1.08998 * 109.47377 * 30.01979 * 1 2 3 27 27 H 1.08998 * 109.47215 * 150.02192 * 1 2 3 28 28 H 0.96999 * 120.00033 * 180.02562 * 11 10 8 29 29 H 1.09005 * 109.46664 * 1.15668 * 17 16 6 30 30 H 1.09001 * 109.46946 * 66.63044 * 18 17 16 31 31 H 1.08993 * 109.47333 * 186.63424 * 18 17 16 32 32 H 1.09007 * 109.46847 * 306.63547 * 18 17 16 33 33 H 1.09002 * 109.47453 * 62.62585 * 19 17 16 34 34 H 1.09006 * 109.47231 * 182.61946 * 19 17 16 35 35 H 1.09000 * 109.47867 * 302.62015 * 19 17 16 36 36 H 1.08997 * 109.47251 * 270.02714 * 24 23 2 37 37 H 1.09001 * 109.46819 * 30.02924 * 24 23 2 38 38 H 1.08998 * 109.47039 * 150.02622 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4964 1.4475 0.0000 4 6 3.9851 0.5107 0.0008 5 7 5.2720 0.9067 0.0007 6 6 6.2576 0.0420 0.0009 7 16 7.9182 0.6312 0.0014 8 6 7.6263 2.3689 0.0008 9 1 6.6144 2.7464 -0.0002 10 6 8.6963 3.2520 0.0068 11 7 8.4783 4.5495 0.0118 12 14 10.4464 2.5989 0.0077 13 1 10.9130 2.4317 -1.3922 14 1 11.3326 3.5588 0.7136 15 1 10.4847 1.2868 0.7023 16 7 6.0282 -1.3047 -0.0045 17 6 7.1581 -2.2373 -0.0107 18 6 7.0787 -3.1428 1.2201 19 6 7.1060 -3.0931 -1.2777 20 6 4.7671 -1.7787 0.0009 21 8 4.5559 -2.9791 0.0011 22 6 3.6816 -0.8501 0.0004 23 6 2.2520 -1.0901 0.0005 24 6 1.6617 -2.4767 0.0017 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 9.2263 5.1669 0.0155 29 1 8.0924 -1.6762 0.0107 30 1 6.2041 -3.7884 1.1403 31 1 7.9783 -3.7553 1.2791 32 1 6.9971 -2.5297 2.1176 33 1 7.2094 -2.4524 -2.1535 34 1 7.9196 -3.8183 -1.2601 35 1 6.1520 -3.6184 -1.3225 36 1 1.5194 -2.8101 1.0296 37 1 0.7006 -2.4628 -0.5123 38 1 2.3383 -3.1600 -0.5115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007237224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:52 Heat of formation + Delta-G solvation = 4.964317 kcal Electronic energy + Delta-G solvation = -23132.329213 eV Core-core repulsion = 19806.270873 eV Total energy + Delta-G solvation = -3326.058339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20465 -37.58361 -36.95146 -35.17509 -32.89043 -31.61738 -30.77025 -29.03797 -27.13717 -26.22356 -26.06758 -24.53982 -23.15720 -21.17366 -19.37066 -18.82618 -17.58362 -17.02941 -16.54806 -15.86443 -15.75381 -15.36938 -14.61210 -14.16983 -14.12124 -14.03149 -13.28358 -13.25564 -13.22064 -12.84738 -12.72173 -12.58645 -12.27279 -12.11941 -12.06165 -11.86896 -11.65392 -11.55760 -11.50898 -11.36101 -10.99609 -10.96126 -10.51283 -10.36048 -9.58365 -9.48909 -9.39483 -9.24927 -9.07733 -8.31332 -7.99825 -7.12340 -6.65810 -4.47647 0.69761 1.53561 1.94136 2.08619 2.29806 2.50795 2.88607 2.97265 3.01633 3.10522 3.84378 3.96196 4.04491 4.65702 4.74403 4.95074 5.05071 5.10610 5.21948 5.33547 5.38979 5.47124 5.55463 5.64216 5.68010 5.71813 5.85546 5.90091 5.93501 5.95127 5.96398 6.16636 6.23927 6.33133 6.42813 6.59724 6.78091 7.08650 7.59340 8.19588 8.26768 8.50121 8.70547 10.41654 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.005274 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.863862 B = 5307.344227 C = 7140.869058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.235 4.235 3 S 0.157 5.843 4 C 0.132 3.868 5 N -0.505 5.505 6 C 0.361 3.639 7 S 0.101 5.899 8 C -0.533 4.533 9 H 0.133 0.867 10 C 0.103 3.897 11 N -0.846 5.846 12 Si 0.840 3.160 13 H -0.259 1.259 14 H -0.261 1.261 15 H -0.238 1.238 16 N -0.521 5.521 17 C 0.121 3.879 18 C -0.165 4.165 19 C -0.165 4.165 20 C 0.574 3.426 21 O -0.540 6.540 22 C -0.286 4.286 23 C -0.021 4.021 24 C -0.095 4.095 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.279 0.721 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 -11.085 -0.004 12.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.352 4.352 3 S 0.419 5.581 4 C -0.111 4.111 5 N -0.233 5.233 6 C -0.009 4.009 7 S 0.342 5.658 8 C -0.680 4.680 9 H 0.151 0.849 10 C -0.110 4.110 11 N -0.479 5.479 12 Si 0.663 3.337 13 H -0.183 1.183 14 H -0.185 1.185 15 H -0.163 1.163 16 N -0.245 5.245 17 C 0.018 3.982 18 C -0.222 4.222 19 C -0.223 4.223 20 C 0.370 3.630 21 O -0.420 6.420 22 C -0.306 4.306 23 C -0.032 4.032 24 C -0.154 4.154 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.647 -9.767 -0.006 11.282 hybrid contribution 0.013 -1.265 0.025 1.265 sum -5.634 -11.031 0.019 12.387 Atomic orbital electron populations 1.20217 0.87824 1.02611 1.02223 1.23501 0.99673 0.95493 1.16483 1.83954 0.91582 1.06291 1.76290 1.23889 0.96877 0.94018 0.96288 1.68527 0.95858 1.31352 1.27593 1.25555 1.02287 0.80724 0.92285 1.82959 0.92330 1.09588 1.80889 1.22948 1.00606 0.85937 1.58532 0.84916 1.24762 0.98879 0.94312 0.93002 1.69865 1.33024 1.01187 1.43776 0.87068 0.84799 0.81290 0.80501 1.18346 1.18515 1.16264 1.46535 1.08627 1.06118 1.63240 1.21545 0.88182 0.90702 0.97727 1.22176 1.03860 1.00009 0.96193 1.22166 1.04199 1.00003 0.95948 1.16413 0.81216 0.88348 0.77048 1.90723 1.83679 1.15085 1.52525 1.20363 0.94257 0.92503 1.23511 1.18979 0.89648 0.95990 0.98560 1.20573 1.00114 0.92468 1.02201 0.91305 0.91700 0.90806 0.91057 0.87807 0.89895 0.91067 0.92346 0.92251 0.90929 0.90098 0.91443 0.91979 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 9.98 36.01 0.36 -0.40 16 2 C -0.23 -3.56 6.39 -36.22 -0.23 -3.79 16 3 S 0.16 2.70 23.20 -107.50 -2.49 0.20 16 4 C 0.13 2.75 7.69 -15.88 -0.12 2.63 16 5 N -0.50 -11.58 8.44 -11.38 -0.10 -11.68 16 6 C 0.36 7.69 7.78 -88.41 -0.69 7.00 16 7 S 0.10 2.14 17.29 -107.50 -1.86 0.28 16 8 C -0.53 -13.83 9.78 30.92 0.30 -13.53 16 9 H 0.13 3.86 6.75 -52.48 -0.35 3.50 16 10 C 0.10 2.65 5.50 -17.48 -0.10 2.56 16 11 N -0.85 -23.05 13.96 55.49 0.77 -22.27 16 12 Si 0.84 17.81 27.74 -169.99 -4.72 13.09 16 13 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 15 H -0.24 -4.70 6.73 56.52 0.38 -4.32 16 16 N -0.52 -9.90 2.56 -111.84 -0.29 -10.18 16 17 C 0.12 1.88 3.08 -67.93 -0.21 1.67 16 18 C -0.16 -2.28 8.98 37.16 0.33 -1.94 16 19 C -0.17 -2.27 9.17 37.15 0.34 -1.93 16 20 C 0.57 11.33 6.90 -14.50 -0.10 11.23 16 21 O -0.54 -10.50 11.45 5.02 0.06 -10.44 16 22 C -0.29 -5.67 6.06 -105.01 -0.64 -6.30 16 23 C -0.02 -0.35 5.96 -103.88 -0.62 -0.97 16 24 C -0.09 -1.33 9.45 36.01 0.34 -0.99 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.70 6.52 -51.93 -0.34 0.36 16 28 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.10 1.56 5.75 -46.93 -0.27 1.29 16 30 H 0.08 1.25 6.29 -51.93 -0.33 0.93 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.24 6.21 -51.93 -0.32 0.92 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.70 6.49 -51.93 -0.34 0.36 16 38 H 0.08 1.24 6.60 -51.93 -0.34 0.90 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -28.73 332.23 -9.04 -37.77 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.41 Total: 2.99 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -1.03 Total: -4.77 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.39 Total: -44.14 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -4.72 Total: 13.09 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -4.35 Total: 0.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.73 -9.04 -37.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007237224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.738 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds