Wall clock time and date at job start Tue Mar 31 2020 13:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75332 * 124.35003 * 2 1 4 4 C 1.75901 * 92.16784 * 179.97438 * 3 2 1 5 5 N 1.34647 * 130.71279 * 179.97438 * 4 3 2 6 6 C 1.31116 * 121.63294 * 180.02562 * 5 4 3 7 7 S 1.76200 * 119.20224 * 180.02562 * 6 5 4 8 8 C 1.76202 * 100.00162 * 359.97438 * 7 6 5 9 9 H 1.08006 * 119.99533 * 359.97438 * 8 7 6 10 10 C 1.38732 * 120.00102 * 179.72694 * 8 7 6 11 11 N 1.31567 * 119.99870 * 180.27492 * 10 8 7 12 12 Si 1.86798 * 119.99925 * 0.27392 * 10 8 7 13 13 H 1.48505 * 109.46927 * 90.00253 * 12 10 8 14 14 H 1.48496 * 109.47172 * 209.99922 * 12 10 8 15 15 H 1.48503 * 109.47240 * 330.00234 * 12 10 8 16 16 N 1.36608 * 121.59470 * 0.27736 * 6 5 4 17 17 C 1.46502 * 119.87074 * 179.70347 * 16 6 5 18 18 C 1.53002 * 109.47395 * 121.15453 * 17 16 6 19 19 C 1.52990 * 109.47094 * 241.15729 * 17 16 6 20 20 C 1.34728 * 120.26395 * 359.45718 * 16 6 5 21 21 O 1.21888 * 120.57480 * 180.26913 * 20 16 6 22 22 C 1.39418 * 109.61011 * 0.02562 * 4 3 2 23 23 C 1.32032 * 124.34859 * 179.97438 * 2 1 3 24 24 C 1.50702 * 122.59223 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.46637 * 270.01837 * 1 2 3 26 26 H 1.08998 * 109.47377 * 30.01979 * 1 2 3 27 27 H 1.08998 * 109.47215 * 150.02192 * 1 2 3 28 28 H 0.96999 * 120.00033 * 180.02562 * 11 10 8 29 29 H 1.09005 * 109.46664 * 1.15668 * 17 16 6 30 30 H 1.09001 * 109.46946 * 66.63044 * 18 17 16 31 31 H 1.08993 * 109.47333 * 186.63424 * 18 17 16 32 32 H 1.09007 * 109.46847 * 306.63547 * 18 17 16 33 33 H 1.09002 * 109.47453 * 62.62585 * 19 17 16 34 34 H 1.09006 * 109.47231 * 182.61946 * 19 17 16 35 35 H 1.09000 * 109.47867 * 302.62015 * 19 17 16 36 36 H 1.08997 * 109.47251 * 270.02714 * 24 23 2 37 37 H 1.09001 * 109.46819 * 30.02924 * 24 23 2 38 38 H 1.08998 * 109.47039 * 150.02622 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4964 1.4475 0.0000 4 6 3.9851 0.5107 0.0008 5 7 5.2720 0.9067 0.0007 6 6 6.2576 0.0420 0.0009 7 16 7.9182 0.6312 0.0014 8 6 7.6263 2.3689 0.0008 9 1 6.6144 2.7464 -0.0002 10 6 8.6963 3.2520 0.0068 11 7 8.4783 4.5495 0.0118 12 14 10.4464 2.5989 0.0077 13 1 10.9130 2.4317 -1.3922 14 1 11.3326 3.5588 0.7136 15 1 10.4847 1.2868 0.7023 16 7 6.0282 -1.3047 -0.0045 17 6 7.1581 -2.2373 -0.0107 18 6 7.0787 -3.1428 1.2201 19 6 7.1060 -3.0931 -1.2777 20 6 4.7671 -1.7787 0.0009 21 8 4.5559 -2.9791 0.0011 22 6 3.6816 -0.8501 0.0004 23 6 2.2520 -1.0901 0.0005 24 6 1.6617 -2.4767 0.0017 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 9.2263 5.1669 0.0155 29 1 8.0924 -1.6762 0.0107 30 1 6.2041 -3.7884 1.1403 31 1 7.9783 -3.7553 1.2791 32 1 6.9971 -2.5297 2.1176 33 1 7.2094 -2.4524 -2.1535 34 1 7.9196 -3.8183 -1.2601 35 1 6.1520 -3.6184 -1.3225 36 1 1.5194 -2.8101 1.0296 37 1 0.7006 -2.4628 -0.5123 38 1 2.3383 -3.1600 -0.5115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007237224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:51 Heat of formation + Delta-G solvation = -10.696345 kcal Electronic energy + Delta-G solvation = -23133.008310 eV Core-core repulsion = 19806.270873 eV Total energy + Delta-G solvation = -3326.737436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71356 -38.96286 -38.48054 -36.51420 -34.81255 -32.95157 -32.16154 -30.19332 -28.23982 -28.06898 -27.46804 -26.03858 -24.54643 -22.51025 -20.95998 -20.21400 -19.17470 -18.66815 -17.96733 -17.32364 -17.26079 -17.11361 -16.15635 -15.52499 -15.32175 -15.24122 -14.94081 -14.64197 -14.45468 -14.21799 -14.04406 -13.77984 -13.57187 -13.42632 -13.35750 -13.14087 -13.12462 -12.95963 -12.73059 -12.69235 -12.35103 -12.20241 -12.00452 -11.78000 -11.34552 -11.26077 -10.80719 -10.77402 -10.68439 -9.92359 -9.45625 -8.67565 -8.57503 -6.43649 -0.82961 0.05855 0.33296 0.59803 0.93843 1.04353 1.30613 1.32631 1.39349 1.51152 2.09824 2.24421 2.41561 2.82040 3.26127 3.56443 3.79523 3.87901 3.93402 4.05753 4.15085 4.37722 4.46635 4.57399 4.66606 4.68351 4.72985 4.74929 4.80542 4.86010 4.93094 5.05905 5.10368 5.20948 5.21852 5.32191 5.53598 5.64743 5.69459 6.38639 6.61225 6.72822 6.77389 8.54771 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.005274 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.863862 B = 5307.344227 C = 7140.869058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.204 4.204 3 S 0.162 5.838 4 C 0.085 3.915 5 N -0.538 5.538 6 C 0.353 3.647 7 S 0.136 5.864 8 C -0.562 4.562 9 H 0.086 0.914 10 C 0.053 3.947 11 N -0.900 5.900 12 Si 0.901 3.099 13 H -0.250 1.250 14 H -0.254 1.254 15 H -0.212 1.212 16 N -0.517 5.517 17 C 0.108 3.892 18 C -0.157 4.157 19 C -0.158 4.158 20 C 0.564 3.436 21 O -0.538 6.538 22 C -0.286 4.286 23 C -0.050 4.050 24 C -0.086 4.086 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.283 0.717 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.072 -13.790 0.044 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.321 4.321 3 S 0.424 5.576 4 C -0.155 4.155 5 N -0.267 5.267 6 C -0.018 4.018 7 S 0.376 5.624 8 C -0.709 4.709 9 H 0.104 0.896 10 C -0.156 4.156 11 N -0.534 5.534 12 Si 0.720 3.280 13 H -0.174 1.174 14 H -0.178 1.178 15 H -0.136 1.136 16 N -0.241 5.241 17 C 0.006 3.994 18 C -0.215 4.215 19 C -0.216 4.216 20 C 0.360 3.640 21 O -0.419 6.419 22 C -0.307 4.307 23 C -0.060 4.060 24 C -0.145 4.145 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.279 -12.499 0.044 13.988 hybrid contribution -0.175 -0.518 0.004 0.547 sum -6.455 -13.017 0.048 14.530 Atomic orbital electron populations 1.20472 0.84066 1.04520 1.04079 1.24139 1.01680 0.93607 1.12672 1.83899 0.90585 1.07680 1.75390 1.24284 0.97051 0.95484 0.98658 1.68458 0.97269 1.33003 1.27995 1.25625 1.02242 0.81658 0.92311 1.82286 0.92094 1.05168 1.82869 1.22941 0.99022 0.89529 1.59442 0.89582 1.25714 1.03522 0.94295 0.92020 1.69988 1.34692 1.02904 1.45864 0.86135 0.78650 0.81881 0.81294 1.17351 1.17767 1.13551 1.46705 1.09523 1.05660 1.62194 1.21969 0.87099 0.90701 0.99583 1.22143 1.05062 0.99542 0.94716 1.22136 1.04709 1.00095 0.94634 1.16566 0.81608 0.88495 0.77369 1.90720 1.83794 1.14806 1.52553 1.20910 0.96122 0.92231 1.21438 1.19307 0.88342 0.98046 1.00350 1.20569 1.00965 0.90006 1.02931 0.89293 0.90222 0.88407 0.90726 0.87173 0.91252 0.87378 0.93366 0.92825 0.87294 0.91754 0.90627 0.88702 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 9.98 71.24 0.71 -0.57 16 2 C -0.20 -5.74 6.39 24.76 0.16 -5.58 16 3 S 0.16 5.57 23.20 -56.49 -1.31 4.25 16 4 C 0.09 3.66 7.69 84.55 0.65 4.31 16 5 N -0.54 -25.95 8.44 -189.92 -1.60 -27.55 16 6 C 0.35 15.48 7.78 179.58 1.40 16.88 16 7 S 0.14 5.83 17.29 -56.49 -0.98 4.86 16 8 C -0.56 -30.64 9.78 67.94 0.66 -29.97 16 9 H 0.09 5.40 6.75 -2.91 -0.02 5.38 16 10 C 0.05 2.80 5.50 84.85 0.47 3.26 16 11 N -0.90 -51.48 13.96 21.63 0.30 -51.17 16 12 Si 0.90 36.63 27.74 68.60 1.90 38.53 16 13 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 14 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 15 H -0.21 -7.66 6.73 99.48 0.67 -6.99 16 16 N -0.52 -19.71 2.56 -625.90 -1.60 -21.31 16 17 C 0.11 3.20 3.08 44.99 0.14 3.34 16 18 C -0.16 -4.04 8.98 71.98 0.65 -3.39 16 19 C -0.16 -4.05 9.17 71.98 0.66 -3.39 16 20 C 0.56 22.30 6.90 85.40 0.59 22.88 16 21 O -0.54 -20.63 11.45 -4.95 -0.06 -20.69 16 22 C -0.29 -11.38 6.06 -20.12 -0.12 -11.50 16 23 C -0.05 -1.60 5.96 -19.07 -0.11 -1.71 16 24 C -0.09 -2.18 9.45 71.24 0.67 -1.51 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.10 1.35 6.52 -2.39 -0.02 1.33 16 28 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.11 3.11 5.75 -5.56 -0.03 3.08 16 30 H 0.07 1.99 6.29 -2.39 -0.02 1.97 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.06 1.88 6.21 -2.39 -0.01 1.87 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.09 1.75 6.49 -2.39 -0.02 1.73 16 38 H 0.06 1.81 6.60 -2.39 -0.02 1.79 16 Total: -1.00 -67.46 332.23 4.22 -63.24 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 1.05 Total: 16.81 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 6.52 Total: -6.96 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -2.90 Total: -100.04 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.06 Total: -20.69 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 1.90 Total: 38.53 kcal Atomic # 16 Polarization: 11.40 SS G_CDS: -2.29 Total: 9.11 kcal Total: -67.46 4.22 -63.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007237224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.545 kcal (2) G-P(sol) polarization free energy of solvation -67.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds