Wall clock time and date at job start Tue Mar 31 2020 14:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99761 * 2 1 4 4 H 1.48494 * 109.47327 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.47209 * 30.00184 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99900 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00051 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.47304 * 180.02562 * 9 7 2 11 11 C 1.76200 * 100.00064 * 180.02562 * 10 9 7 12 12 N 1.31289 * 126.48411 * 359.97042 * 11 10 9 13 13 N 1.28520 * 109.85682 * 179.97438 * 12 11 10 14 14 C 1.30304 * 110.08027 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.34445 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.47191 * 90.02607 * 15 14 13 17 17 C 1.35941 * 117.00491 * 180.02562 * 16 15 14 18 18 C 1.38707 * 120.03483 * 180.02562 * 17 16 15 19 19 C 1.38155 * 119.96876 * 180.30406 * 18 17 16 20 20 C 1.38449 * 120.03116 * 359.46154 * 19 18 17 21 21 F 1.35099 * 119.97156 * 180.26024 * 20 19 18 22 22 C 1.38458 * 120.05965 * 0.51158 * 20 19 18 23 23 C 1.38155 * 120.02984 * 359.77142 * 22 20 19 24 24 N 1.36537 * 126.48436 * 180.24828 * 11 10 9 25 25 N 1.36601 * 127.14407 * 0.02562 * 24 11 10 26 26 H 0.96999 * 120.00217 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47099 * 60.00357 * 9 7 2 28 28 H 1.08998 * 109.47391 * 300.00658 * 9 7 2 29 29 H 1.09002 * 109.46756 * 330.02798 * 15 14 13 30 30 H 1.09002 * 109.46941 * 210.02926 * 15 14 13 31 31 H 1.08002 * 120.01083 * 0.02562 * 18 17 16 32 32 H 1.07995 * 119.97841 * 179.72327 * 19 18 17 33 33 H 1.08004 * 119.98763 * 179.74539 * 22 20 19 34 34 H 1.07996 * 120.00989 * 179.97438 * 23 22 20 35 35 H 1.00903 * 110.99994 * 270.15263 * 25 24 11 36 36 H 1.00902 * 111.00020 * 34.10448 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 16 2.4274 -3.8748 -0.0005 11 6 1.3074 -5.2350 -0.0013 12 7 -0.0037 -5.1667 -0.0012 13 7 -0.5026 -6.3511 -0.0024 14 6 0.4516 -7.2384 -0.0029 15 6 0.2790 -8.7355 -0.0037 16 8 0.2251 -9.2080 -1.3512 17 6 0.0703 -10.5467 -1.5302 18 6 0.0107 -11.0735 -2.8120 19 6 -0.1530 -12.4334 -2.9923 20 6 -0.2463 -13.2717 -1.8944 21 9 -0.4010 -14.6019 -2.0722 22 6 -0.1863 -12.7473 -0.6144 23 6 -0.0286 -11.3870 -0.4311 24 7 1.6388 -6.5596 0.0032 25 7 2.8953 -7.0954 0.0096 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 -0.6471 -8.9947 0.5095 30 1 1.1212 -9.1987 0.5104 31 1 0.0877 -10.4202 -3.6686 32 1 -0.2039 -12.8431 -3.9902 33 1 -0.2633 -13.4018 0.2413 34 1 0.0177 -10.9783 0.5675 35 1 3.2328 -7.2372 -0.9307 36 1 3.5317 -6.5186 0.5391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043751176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:17 Heat of formation + Delta-G solvation = 43.512853 kcal Electronic energy + Delta-G solvation = -23090.002487 eV Core-core repulsion = 19231.695313 eV Total energy + Delta-G solvation = -3858.307174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.12745 -42.82114 -40.41198 -37.60937 -36.40103 -33.29908 -32.11951 -31.49866 -29.72475 -29.54374 -28.75066 -27.15448 -23.65904 -23.29716 -22.75204 -22.58597 -21.07658 -18.79783 -18.65751 -17.77086 -17.36342 -16.96849 -16.81616 -16.31606 -15.94650 -15.58020 -15.28891 -15.15158 -14.85030 -14.72434 -14.05468 -13.61872 -13.38232 -13.26877 -12.79338 -12.62759 -12.51752 -12.46439 -11.69354 -11.51405 -11.27354 -11.21824 -10.99942 -10.91754 -10.66918 -10.33622 -9.88567 -9.78856 -9.59877 -9.58453 -9.41452 -8.71127 -8.46515 -7.13527 -6.29186 -4.38922 0.76311 0.84647 1.42237 1.54978 2.30039 2.64174 3.14787 3.19248 3.19298 3.22947 3.25674 3.31107 3.93109 4.02493 4.24558 4.30222 4.38568 4.50770 4.63957 4.75081 4.88883 4.97373 5.07164 5.21410 5.47811 5.50296 5.59069 5.72576 5.76876 5.83067 5.97725 6.30482 6.34654 6.95200 6.97515 7.08786 7.36560 7.56443 7.80797 8.61314 8.74209 9.25488 10.80878 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.042246 B = 0.002030 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.632736 B =13788.746248 C =13941.994710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.531 4.531 8 H 0.068 0.932 9 C 0.084 3.916 10 S -0.058 6.058 11 C 0.156 3.844 12 N -0.275 5.275 13 N -0.253 5.253 14 C 0.177 3.823 15 C 0.162 3.838 16 O -0.306 6.306 17 C 0.130 3.870 18 C -0.122 4.122 19 C -0.112 4.112 20 C 0.055 3.945 21 F -0.143 7.143 22 C -0.110 4.110 23 C -0.181 4.181 24 N -0.307 5.307 25 N -0.584 5.584 26 H 0.269 0.731 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.364 0.636 36 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -24.138 -1.811 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.086 0.914 9 C -0.063 4.063 10 S 0.170 5.830 11 C -0.218 4.218 12 N -0.120 5.120 13 N -0.096 5.096 14 C -0.092 4.092 15 C 0.085 3.915 16 O -0.218 6.218 17 C 0.084 3.916 18 C -0.141 4.141 19 C -0.131 4.131 20 C 0.036 3.964 21 F -0.121 7.121 22 C -0.129 4.129 23 C -0.200 4.200 24 N -0.092 5.092 25 N -0.215 5.215 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.151 -23.948 -1.585 24.207 hybrid contribution 0.800 0.859 -0.305 1.213 sum 3.951 -23.090 -1.890 23.501 Atomic orbital electron populations 1.69973 1.06108 1.27719 1.47689 1.24944 0.95001 0.99228 0.94224 0.86311 0.79631 0.82008 0.78449 1.20208 1.20765 1.19531 1.20549 0.93259 0.88457 1.54855 0.91433 1.21390 0.93418 0.88641 1.02835 1.85452 1.11445 0.95046 1.91025 1.28115 0.98824 0.89078 1.05760 1.74953 1.03160 1.13656 1.20265 1.74093 1.24593 0.95349 1.15610 1.23830 0.80301 0.95768 1.09285 1.20630 1.03746 0.84706 0.82437 1.86154 1.87362 1.19608 1.28665 1.18987 0.96053 0.82468 0.94080 1.20319 1.03905 0.94406 0.95458 1.20960 1.00747 0.92628 0.98735 1.17585 1.06861 0.77737 0.94244 1.91491 1.93509 1.30923 1.96226 1.20943 1.00439 0.95508 0.96047 1.21169 1.06592 0.93382 0.98861 1.45132 1.03656 1.03663 1.56707 1.59781 0.93129 1.46985 1.21653 0.92107 0.92628 0.92597 0.88339 0.89039 0.84017 0.84030 0.84374 0.84180 0.81807 0.80368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.07 1.95 5.46 -17.82 -0.10 1.86 16 3 Si 0.91 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.53 -14.15 9.13 -34.44 -0.31 -14.46 16 8 H 0.07 1.73 7.71 -52.48 -0.40 1.33 16 9 C 0.08 2.13 4.99 36.00 0.18 2.31 16 10 S -0.06 -1.15 21.90 -107.50 -2.35 -3.50 16 11 C 0.16 3.03 8.13 -88.34 -0.72 2.31 16 12 N -0.27 -6.05 11.60 30.68 0.36 -5.70 16 13 N -0.25 -4.97 12.17 33.00 0.40 -4.56 16 14 C 0.18 2.78 7.81 -153.99 -1.20 1.57 16 15 C 0.16 1.77 5.28 36.01 0.19 1.96 16 16 O -0.31 -3.57 10.12 -19.56 -0.20 -3.77 16 17 C 0.13 1.26 6.69 -39.23 -0.26 1.00 16 18 C -0.12 -1.07 9.99 -39.44 -0.39 -1.47 16 19 C -0.11 -0.89 10.02 -39.53 -0.40 -1.29 16 20 C 0.06 0.48 7.30 -39.42 -0.29 0.19 16 21 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 22 C -0.11 -0.86 10.02 -39.53 -0.40 -1.25 16 23 C -0.18 -1.45 9.04 -39.44 -0.36 -1.81 16 24 N -0.31 -4.72 3.81 -9.93 -0.04 -4.75 16 25 N -0.58 -6.26 10.39 60.35 0.63 -5.63 16 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.06 1.52 8.14 -51.91 -0.42 1.10 16 28 H 0.06 1.52 8.14 -51.92 -0.42 1.10 16 29 H 0.10 0.91 7.66 -51.93 -0.40 0.51 16 30 H 0.09 0.78 7.66 -51.93 -0.40 0.39 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.14 0.85 6.30 -52.49 -0.33 0.52 16 35 H 0.36 3.24 9.21 -181.36 -1.67 1.57 16 36 H 0.38 3.66 8.81 -181.36 -1.60 2.06 16 LS Contribution 341.36 15.07 5.14 5.14 Total: -1.00 -31.94 341.36 -10.41 -42.34 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.05 Total: -0.23 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -4.06 Total: -9.07 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 2.08 Total: -45.01 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.20 Total: -3.77 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.35 Total: -3.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.94 -10.41 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043751176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.857 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds