Wall clock time and date at job start Tue Mar 31 2020 14:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99761 * 2 1 4 4 H 1.48494 * 109.47327 * 269.99873 * 3 2 1 5 5 H 1.48501 * 109.47209 * 30.00184 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99900 * 3 2 1 7 7 C 1.37875 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00051 * 359.97438 * 7 2 1 10 10 S 1.81002 * 109.47304 * 180.02562 * 9 7 2 11 11 C 1.76200 * 100.00064 * 180.02562 * 10 9 7 12 12 N 1.31289 * 126.48411 * 359.97042 * 11 10 9 13 13 N 1.28520 * 109.85682 * 179.97438 * 12 11 10 14 14 C 1.30304 * 110.08027 * 0.02562 * 13 12 11 15 15 C 1.50700 * 126.34445 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.47191 * 90.02607 * 15 14 13 17 17 C 1.35941 * 117.00491 * 180.02562 * 16 15 14 18 18 C 1.38707 * 120.03483 * 180.02562 * 17 16 15 19 19 C 1.38155 * 119.96876 * 180.30406 * 18 17 16 20 20 C 1.38449 * 120.03116 * 359.46154 * 19 18 17 21 21 F 1.35099 * 119.97156 * 180.26024 * 20 19 18 22 22 C 1.38458 * 120.05965 * 0.51158 * 20 19 18 23 23 C 1.38155 * 120.02984 * 359.77142 * 22 20 19 24 24 N 1.36537 * 126.48436 * 180.24828 * 11 10 9 25 25 N 1.36601 * 127.14407 * 0.02562 * 24 11 10 26 26 H 0.96999 * 120.00217 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47099 * 60.00357 * 9 7 2 28 28 H 1.08998 * 109.47391 * 300.00658 * 9 7 2 29 29 H 1.09002 * 109.46756 * 330.02798 * 15 14 13 30 30 H 1.09002 * 109.46941 * 210.02926 * 15 14 13 31 31 H 1.08002 * 120.01083 * 0.02562 * 18 17 16 32 32 H 1.07995 * 119.97841 * 179.72327 * 19 18 17 33 33 H 1.08004 * 119.98763 * 179.74539 * 22 20 19 34 34 H 1.07996 * 120.00989 * 179.97438 * 23 22 20 35 35 H 1.00903 * 110.99994 * 270.15263 * 25 24 11 36 36 H 1.00902 * 111.00020 * 34.10448 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 16 2.4274 -3.8748 -0.0005 11 6 1.3074 -5.2350 -0.0013 12 7 -0.0037 -5.1667 -0.0012 13 7 -0.5026 -6.3511 -0.0024 14 6 0.4516 -7.2384 -0.0029 15 6 0.2790 -8.7355 -0.0037 16 8 0.2251 -9.2080 -1.3512 17 6 0.0703 -10.5467 -1.5302 18 6 0.0107 -11.0735 -2.8120 19 6 -0.1530 -12.4334 -2.9923 20 6 -0.2463 -13.2717 -1.8944 21 9 -0.4010 -14.6019 -2.0722 22 6 -0.1863 -12.7473 -0.6144 23 6 -0.0286 -11.3870 -0.4311 24 7 1.6388 -6.5596 0.0032 25 7 2.8953 -7.0954 0.0096 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 -0.6471 -8.9947 0.5095 30 1 1.1212 -9.1987 0.5104 31 1 0.0877 -10.4202 -3.6686 32 1 -0.2039 -12.8431 -3.9902 33 1 -0.2633 -13.4018 0.2413 34 1 0.0177 -10.9783 0.5675 35 1 3.2328 -7.2372 -0.9307 36 1 3.5317 -6.5186 0.5391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043751176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:16 Heat of formation + Delta-G solvation = 24.036219 kcal Electronic energy + Delta-G solvation = -23090.847057 eV Core-core repulsion = 19231.695313 eV Total energy + Delta-G solvation = -3859.151744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.81235 -44.18974 -41.14216 -38.33730 -37.60011 -35.35133 -33.22192 -32.19792 -30.93778 -30.76039 -30.32954 -28.20354 -25.37962 -24.26330 -24.18171 -23.32830 -22.23921 -19.95075 -19.52650 -18.70657 -18.50668 -18.25889 -17.90519 -17.74420 -16.86059 -16.64689 -16.36823 -16.31202 -16.01146 -15.66954 -15.11586 -14.69902 -14.55453 -14.43686 -14.25313 -14.01956 -13.54355 -13.39126 -13.14719 -12.84244 -12.76090 -12.59435 -12.35666 -12.04501 -11.91089 -11.78368 -11.67326 -11.33366 -11.27976 -10.75601 -10.73090 -10.18338 -9.15810 -8.73134 -8.34594 -6.53183 -0.02398 0.16153 0.18690 0.22247 1.04769 1.32943 1.34061 1.43121 1.44210 1.56847 2.19696 2.35501 2.56080 2.98113 3.00306 3.33493 3.47281 3.66055 3.76183 3.81393 4.00550 4.19424 4.19742 4.32787 4.44375 4.58595 4.74135 4.84889 4.91068 4.98239 5.12185 5.14438 5.20295 5.48885 5.49479 5.66907 5.75277 6.20602 6.26181 6.55785 7.17042 7.32661 8.77250 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.042246 B = 0.002030 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.632736 B =13788.746248 C =13941.994710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.078 0.922 9 C 0.080 3.920 10 S 0.002 5.998 11 C 0.134 3.866 12 N -0.324 5.324 13 N -0.295 5.295 14 C 0.201 3.799 15 C 0.163 3.837 16 O -0.324 6.324 17 C 0.113 3.887 18 C -0.131 4.131 19 C -0.111 4.111 20 C 0.041 3.959 21 F -0.149 7.149 22 C -0.110 4.110 23 C -0.177 4.177 24 N -0.298 5.298 25 N -0.567 5.567 26 H 0.272 0.728 27 H 0.021 0.979 28 H 0.022 0.978 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.379 0.621 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 -25.770 -1.488 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.586 4.586 8 H 0.096 0.904 9 C -0.068 4.068 10 S 0.231 5.769 11 C -0.243 4.243 12 N -0.169 5.169 13 N -0.138 5.138 14 C -0.069 4.069 15 C 0.086 3.914 16 O -0.237 6.237 17 C 0.068 3.932 18 C -0.150 4.150 19 C -0.130 4.130 20 C 0.022 3.978 21 F -0.128 7.128 22 C -0.128 4.128 23 C -0.196 4.196 24 N -0.080 5.080 25 N -0.201 5.201 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.199 0.801 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 5.217 -25.617 -1.271 26.174 hybrid contribution 0.170 1.095 -0.431 1.189 sum 5.387 -24.522 -1.702 25.164 Atomic orbital electron populations 1.70119 1.08074 1.28827 1.48829 1.26008 0.95816 1.03383 0.93428 0.85178 0.78538 0.76903 0.78825 1.19371 1.20486 1.18077 1.20942 0.93809 0.89296 1.54519 0.90406 1.20944 0.94427 0.91859 0.99599 1.84753 1.08208 0.92375 1.91576 1.28015 0.98383 0.90729 1.07124 1.74840 1.04859 1.15559 1.21649 1.73992 1.26290 0.95336 1.18142 1.24693 0.79464 0.97372 1.05420 1.20903 1.06103 0.81477 0.82883 1.86087 1.88039 1.20941 1.28674 1.19172 0.97314 0.81753 0.94977 1.20461 1.04097 0.94821 0.95576 1.21138 1.00043 0.92241 0.99570 1.17844 1.07348 0.77571 0.95037 1.91476 1.93625 1.31416 1.96310 1.21200 0.99488 0.95763 0.96390 1.21384 1.05623 0.93219 0.99349 1.45205 1.05422 1.02100 1.55282 1.59950 0.91546 1.45700 1.22888 0.91943 0.96104 0.95926 0.86476 0.85912 0.83657 0.82356 0.82324 0.82011 0.80102 0.79344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 2 C 0.02 0.87 5.46 84.65 0.46 1.33 16 3 Si 0.98 41.91 29.54 68.60 2.03 43.93 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.55 -29.63 9.13 25.60 0.23 -29.40 16 8 H 0.08 3.96 7.71 -2.91 -0.02 3.94 16 9 C 0.08 4.24 4.99 71.23 0.36 4.60 16 10 S 0.00 0.09 21.90 -56.49 -1.24 -1.15 16 11 C 0.13 5.21 8.13 179.55 1.46 6.67 16 12 N -0.32 -14.80 11.60 -56.85 -0.66 -15.46 16 13 N -0.30 -11.77 12.17 -49.52 -0.60 -12.38 16 14 C 0.20 6.07 7.81 137.63 1.07 7.14 16 15 C 0.16 3.14 5.28 71.24 0.38 3.51 16 16 O -0.32 -6.94 10.12 -92.89 -0.94 -7.88 16 17 C 0.11 1.96 6.69 22.49 0.15 2.11 16 18 C -0.13 -2.11 9.99 22.36 0.22 -1.88 16 19 C -0.11 -1.59 10.02 22.30 0.22 -1.37 16 20 C 0.04 0.64 7.30 22.37 0.16 0.81 16 21 F -0.15 -2.61 17.27 44.97 0.78 -1.84 16 22 C -0.11 -1.42 10.02 22.30 0.22 -1.19 16 23 C -0.18 -2.32 9.04 22.36 0.20 -2.12 16 24 N -0.30 -8.74 3.81 -185.32 -0.71 -9.44 16 25 N -0.57 -10.58 10.39 37.02 0.38 -10.19 16 26 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 27 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.02 1.31 8.14 -2.40 -0.02 1.29 16 29 H 0.12 1.84 7.66 -2.39 -0.02 1.82 16 30 H 0.12 1.60 7.66 -2.39 -0.02 1.58 16 31 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.16 1.32 6.30 -2.91 -0.02 1.31 16 35 H 0.38 5.59 9.21 -210.55 -1.94 3.65 16 36 H 0.39 6.37 8.81 -210.55 -1.85 4.51 16 Total: -1.00 -72.68 341.36 1.85 -70.83 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -2.63 Total: 7.56 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.15 Total: -9.80 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -1.30 Total: -101.66 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.94 Total: -7.88 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.84 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.24 Total: -1.15 kcal Total: -72.68 1.85 -70.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043751176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.871 kcal (2) G-P(sol) polarization free energy of solvation -72.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds