Wall clock time and date at job start Tue Mar 31 2020 13:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31592 * 122.23586 * 2 1 4 4 C 1.29938 * 117.14071 * 179.97438 * 3 2 1 5 5 N 1.38896 * 125.36588 * 179.97438 * 4 3 2 6 6 C 1.34772 * 120.00351 * 180.02562 * 5 4 3 7 7 O 1.21292 * 120.00081 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00175 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.64095 * 299.99687 * 8 6 5 10 10 C 1.53019 * 109.64069 * 60.42071 * 8 6 5 11 11 C 1.50165 * 110.09449 * 168.90360 * 10 8 6 12 12 C 1.29439 * 124.14884 * 343.28297 * 11 10 8 13 13 C 1.50076 * 124.07564 * 0.23779 * 12 11 10 14 14 C 1.53024 * 110.14326 * 342.87074 * 13 12 11 15 15 S 1.76138 * 109.27351 * 0.02562 * 4 3 2 16 16 C 1.34658 * 122.22892 * 179.97438 * 2 1 3 17 17 S 1.76202 * 125.92818 * 0.28380 * 16 2 1 18 18 C 1.76205 * 99.99983 * 179.71300 * 17 16 2 19 19 H 1.08007 * 120.00101 * 0.02562 * 18 17 16 20 20 C 1.38425 * 120.00175 * 179.97438 * 18 17 16 21 21 N 1.31812 * 119.99786 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99952 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46904 * 90.00345 * 22 20 18 24 24 H 1.48499 * 109.47072 * 210.00358 * 22 20 18 25 25 H 1.48493 * 109.47183 * 330.00561 * 22 20 18 26 26 H 1.08996 * 109.46581 * 270.02026 * 1 2 3 27 27 H 1.08997 * 109.47100 * 30.01737 * 1 2 3 28 28 H 1.08996 * 109.47341 * 150.02042 * 1 2 3 29 29 H 0.96998 * 119.99690 * 359.97438 * 5 4 3 30 30 H 1.08998 * 109.35885 * 289.32681 * 10 8 6 31 31 H 1.09005 * 109.36159 * 48.91433 * 10 8 6 32 32 H 1.07996 * 117.89154 * 163.03065 * 11 10 8 33 33 H 1.08002 * 117.96650 * 180.21614 * 12 11 10 34 34 H 1.09001 * 109.35955 * 222.66285 * 13 12 11 35 35 H 1.09003 * 109.35707 * 103.07225 * 13 12 11 36 36 H 1.08994 * 109.64388 * 289.74636 * 14 13 12 37 37 H 1.09009 * 109.63608 * 169.11914 * 14 13 12 38 38 H 0.97003 * 119.99562 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4045 2.0545 0.0001 6 6 5.7298 1.8099 0.0002 7 8 6.1356 0.6668 0.0011 8 6 6.7078 2.9565 -0.0008 9 1 6.5549 3.5675 -0.8904 10 6 6.5003 3.8105 1.2518 11 6 7.6304 4.7877 1.4029 12 6 8.7642 4.6885 0.7863 13 6 9.1069 3.5848 -0.1711 14 6 8.1415 2.4113 0.0101 15 16 3.9346 -0.7100 0.0003 16 6 2.2251 -1.1391 0.0005 17 16 1.5696 -2.7746 -0.0058 18 6 3.0664 -3.7042 -0.0103 19 1 4.0187 -3.1946 -0.0082 20 6 3.0220 -5.0878 -0.0153 21 7 1.8599 -5.7098 -0.0173 22 14 4.6089 -6.0732 -0.0208 23 1 5.0310 -6.3396 1.3779 24 1 4.3890 -7.3618 -0.7254 25 1 5.6683 -5.3017 -0.7190 26 1 -0.3632 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3634 -0.8901 -0.5135 29 1 4.0801 2.9686 -0.0010 30 1 5.5582 4.3522 1.1678 31 1 6.4659 3.1637 2.1285 32 1 7.4861 5.6285 2.0652 33 1 9.5098 5.4475 0.9720 34 1 10.1259 3.2467 0.0171 35 1 9.0348 3.9574 -1.1929 36 1 8.3388 1.9182 0.9619 37 1 8.2700 1.7017 -0.8073 38 1 1.8287 -6.6793 -0.0213 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:48 Heat of formation + Delta-G solvation = 1.121423 kcal Electronic energy + Delta-G solvation = -21901.571837 eV Core-core repulsion = 18575.346857 eV Total energy + Delta-G solvation = -3326.224980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.56749 -38.71172 -37.83981 -34.77267 -32.81108 -31.80995 -31.10748 -30.24486 -27.09285 -25.76245 -24.96912 -23.60860 -22.38651 -20.93230 -19.59702 -18.25960 -18.14052 -17.58544 -16.88557 -16.09507 -15.73782 -15.34667 -15.09422 -14.76466 -14.13622 -14.04844 -13.93251 -13.67486 -13.31028 -13.18730 -12.67246 -12.66110 -12.54016 -12.02138 -11.87938 -11.37841 -11.34787 -11.25391 -11.13121 -11.02347 -10.76619 -10.59715 -10.53781 -10.25226 -9.78026 -9.51691 -9.32826 -9.05279 -8.73417 -8.64260 -7.78824 -6.59075 -6.48927 -4.26729 1.40195 1.90401 1.96431 2.47666 2.55790 2.90889 3.09452 3.10909 3.18071 3.37182 3.63477 3.99057 4.24226 4.33402 4.52986 4.83554 4.86735 4.87460 4.97901 5.04878 5.09586 5.21920 5.24002 5.31732 5.53574 5.62802 5.63198 5.92841 5.98964 6.03266 6.16764 6.24087 6.30982 6.46737 6.51277 6.60670 6.98553 7.19924 7.34239 8.00163 8.05387 8.53382 8.89580 10.46755 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.015520 B = 0.003529 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.691404 B = 7932.519738 C = 9569.608007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.476 5.476 4 C 0.188 3.812 5 N -0.615 5.615 6 C 0.508 3.492 7 O -0.503 6.503 8 C -0.097 4.097 9 H 0.104 0.896 10 C -0.085 4.085 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.093 4.093 14 C -0.102 4.102 15 S 0.199 5.801 16 C -0.251 4.251 17 S 0.148 5.852 18 C -0.556 4.556 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.414 0.586 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.235 18.640 0.597 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.198 5.198 4 C -0.183 4.183 5 N -0.264 5.264 6 C 0.294 3.706 7 O -0.376 6.376 8 C -0.118 4.118 9 H 0.122 0.878 10 C -0.122 4.122 11 C -0.172 4.172 12 C -0.172 4.172 13 C -0.130 4.130 14 C -0.140 4.140 15 S 0.443 5.557 16 C -0.488 4.488 17 S 0.398 5.602 18 C -0.704 4.704 19 H 0.107 0.893 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.749 3.251 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.251 0.749 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.018 17.007 0.591 19.259 hybrid contribution 1.101 0.524 0.062 1.221 sum 10.119 17.531 0.653 20.252 Atomic orbital electron populations 1.20113 0.88081 1.02097 1.01769 1.19033 0.96686 0.84612 1.12021 1.65815 1.02854 1.32383 1.18701 1.23811 0.89893 0.92996 1.11645 1.42471 1.04511 1.07979 1.71438 1.20900 0.81777 0.91471 0.76472 1.90706 1.77020 1.22537 1.47386 1.21333 0.94893 0.94687 1.00908 0.87785 1.20482 0.98090 0.96621 0.97028 1.21960 0.94975 0.99479 1.00771 1.22105 0.97343 0.99175 0.98598 1.20507 0.99689 0.94007 0.98764 1.21468 0.91097 0.97297 1.04107 1.85846 1.01754 0.95492 1.72594 1.28767 1.01314 1.06705 1.12032 1.83066 1.11037 0.84442 1.81658 1.23261 0.93577 0.94037 1.59569 0.89348 1.25024 0.98258 0.96667 0.92940 1.70018 1.24387 1.10302 1.44953 0.86037 0.81286 0.78781 0.79016 1.19616 1.20275 1.18886 0.91899 0.91954 0.91053 0.74916 0.90200 0.89976 0.87496 0.87807 0.90498 0.90635 0.90732 0.90211 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.03 36.01 0.36 -0.71 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.17 16 3 N -0.48 -9.57 10.55 -9.78 -0.10 -9.67 16 4 C 0.19 3.60 8.40 -87.20 -0.73 2.87 16 5 N -0.62 -8.83 5.31 -11.78 -0.06 -8.89 16 6 C 0.51 7.08 7.09 -10.99 -0.08 7.00 16 7 O -0.50 -9.06 13.42 5.55 0.07 -8.99 16 8 C -0.10 -0.91 2.57 -91.56 -0.24 -1.15 16 9 H 0.10 0.80 8.13 -51.93 -0.42 0.38 16 10 C -0.08 -0.68 5.29 -28.13 -0.15 -0.83 16 11 C -0.15 -1.11 9.80 -35.85 -0.35 -1.46 16 12 C -0.15 -1.09 9.80 -35.89 -0.35 -1.45 16 13 C -0.09 -0.67 6.12 -28.17 -0.17 -0.85 16 14 C -0.10 -0.98 4.69 -26.51 -0.12 -1.10 16 15 S 0.20 4.42 18.35 -107.50 -1.97 2.45 16 16 C -0.25 -5.85 6.67 29.46 0.20 -5.65 16 17 S 0.15 3.74 20.74 -107.50 -2.23 1.51 16 18 C -0.56 -15.24 9.26 30.80 0.29 -14.96 16 19 H 0.09 2.41 5.97 -52.48 -0.31 2.10 16 20 C 0.08 2.20 5.49 -17.49 -0.10 2.11 16 21 N -0.86 -23.92 13.22 55.47 0.73 -23.19 16 22 Si 0.92 20.81 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.26 7.37 -51.93 -0.38 0.87 16 29 H 0.41 4.49 8.52 -40.82 -0.35 4.14 16 30 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 31 H 0.08 0.75 8.10 -51.93 -0.42 0.32 16 32 H 0.11 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.10 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 37 H 0.08 0.84 7.90 -51.92 -0.41 0.43 16 38 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.50 343.45 -10.22 -41.72 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.80 Total: 0.45 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -2.01 Total: -16.34 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.57 Total: -41.75 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.07 Total: -8.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 8.16 SS G_CDS: -4.20 Total: 3.95 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.50 -10.22 -41.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.841 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds