Wall clock time and date at job start Tue Mar 31 2020 13:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31593 * 122.22481 * 2 1 4 4 C 1.29952 * 117.13777 * 179.97438 * 3 2 1 5 5 N 1.38888 * 125.36785 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00066 * 180.02562 * 5 4 3 7 7 O 1.21291 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00107 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.64066 * 60.00166 * 8 6 5 10 10 C 1.53020 * 109.64104 * 299.57988 * 8 6 5 11 11 C 1.50067 * 110.14558 * 190.87687 * 10 8 6 12 12 C 1.29444 * 124.07626 * 17.13380 * 11 10 8 13 13 C 1.50060 * 124.07369 * 359.55076 * 12 11 10 14 14 C 1.52948 * 110.30373 * 16.95148 * 13 12 11 15 15 S 1.76144 * 109.26587 * 359.76011 * 4 3 2 16 16 C 1.34656 * 122.23375 * 179.97438 * 2 1 3 17 17 S 1.76200 * 125.92883 * 359.97438 * 16 2 1 18 18 C 1.76203 * 99.99686 * 179.97438 * 17 16 2 19 19 H 1.07994 * 120.00298 * 0.02562 * 18 17 16 20 20 C 1.38427 * 119.99768 * 179.97438 * 18 17 16 21 21 N 1.31813 * 119.99905 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00195 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99690 * 22 20 18 24 24 H 1.48503 * 109.47261 * 329.99870 * 22 20 18 25 25 H 1.48500 * 109.47454 * 209.99864 * 22 20 18 26 26 H 1.09004 * 109.47026 * 270.01969 * 1 2 3 27 27 H 1.08998 * 109.47139 * 30.02453 * 1 2 3 28 28 H 1.09002 * 109.46751 * 150.02435 * 1 2 3 29 29 H 0.97001 * 119.99992 * 0.02562 * 5 4 3 30 30 H 1.08995 * 109.36091 * 311.08921 * 10 8 6 31 31 H 1.09008 * 109.36141 * 70.67427 * 10 8 6 32 32 H 1.08005 * 117.96007 * 197.15543 * 11 10 8 33 33 H 1.08005 * 117.95878 * 179.52956 * 12 11 10 34 34 H 1.09001 * 109.35670 * 137.31736 * 13 12 11 35 35 H 1.08996 * 109.36355 * 257.03716 * 13 12 11 36 36 H 1.09005 * 109.80182 * 191.12122 * 14 13 12 37 37 H 1.08996 * 109.44288 * 70.51113 * 14 13 12 38 38 H 0.97004 * 119.99895 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5031 0.9980 0.0005 5 7 4.4043 2.0548 0.0011 6 6 5.7297 1.8103 0.0011 7 8 6.1355 0.6673 0.0001 8 6 6.7075 2.9570 0.0012 9 1 6.5547 3.5687 0.8902 10 6 6.4999 3.8100 -1.2521 11 6 7.6259 4.7907 -1.4022 12 6 8.7615 4.6905 -0.7890 13 6 9.1072 3.5850 0.1650 14 6 8.1413 2.4120 -0.0095 15 16 3.9346 -0.7098 0.0080 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0668 -3.7040 0.0012 19 1 4.0189 -3.1943 0.0006 20 6 3.0225 -5.0876 0.0025 21 7 4.1423 -5.7828 0.0014 22 14 1.3757 -5.9693 0.0042 23 1 0.9384 -6.2042 -1.3954 24 1 0.3673 -5.1334 0.7041 25 1 1.5119 -7.2712 0.7053 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.0798 2.9689 0.0015 30 1 6.4654 3.1626 -2.1283 31 1 5.5577 4.3519 -1.1685 32 1 7.4795 5.6326 -2.0627 33 1 9.5066 5.4497 -0.9760 34 1 10.1256 3.2473 -0.0270 35 1 9.0361 3.9549 1.1878 36 1 8.2699 1.7030 0.8084 37 1 8.3385 1.9182 -0.9610 38 1 4.1112 -6.7524 0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:51 Heat of formation + Delta-G solvation = 4.064056 kcal Electronic energy + Delta-G solvation = -21899.321190 eV Core-core repulsion = 18573.223813 eV Total energy + Delta-G solvation = -3326.097377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59660 -38.80679 -37.86566 -34.82777 -32.74971 -31.82617 -31.11350 -30.33877 -27.16817 -25.89494 -25.01095 -23.61573 -22.42642 -20.99105 -19.68982 -18.25562 -18.15775 -17.64394 -16.87449 -16.12412 -15.75785 -15.40279 -15.24461 -14.76024 -14.16808 -14.07671 -13.95666 -13.67938 -13.32122 -13.20981 -12.77070 -12.67094 -12.53414 -12.10178 -12.01253 -11.57664 -11.38499 -11.32821 -11.25182 -11.09051 -10.77175 -10.61950 -10.57617 -10.13300 -9.83158 -9.45751 -9.31588 -9.15687 -8.84798 -8.76871 -7.88360 -6.72260 -6.55066 -4.28314 1.31668 1.80510 1.97283 2.43675 2.47050 2.77306 2.91900 3.10643 3.20335 3.38197 3.53419 4.03453 4.23785 4.33768 4.49102 4.53178 4.84805 4.86308 4.88094 4.99423 5.09668 5.13905 5.24581 5.31689 5.54417 5.63982 5.64760 5.86229 5.94613 6.03246 6.08927 6.12468 6.32035 6.34786 6.41302 6.61634 6.88255 7.13411 7.67842 7.96641 8.24550 8.43201 8.84673 10.52820 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.003259 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.070853 B = 8589.579783 C = 9810.523495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.482 5.482 4 C 0.193 3.807 5 N -0.616 5.616 6 C 0.508 3.492 7 O -0.498 6.498 8 C -0.096 4.096 9 H 0.105 0.895 10 C -0.085 4.085 11 C -0.154 4.154 12 C -0.153 4.153 13 C -0.093 4.093 14 C -0.103 4.103 15 S 0.231 5.769 16 C -0.239 4.239 17 S 0.053 5.947 18 C -0.544 4.544 19 H 0.105 0.895 20 C 0.102 3.898 21 N -0.857 5.857 22 Si 0.852 3.148 23 H -0.261 1.261 24 H -0.236 1.236 25 H -0.265 1.265 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.414 0.586 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 19.504 -0.515 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.204 5.204 4 C -0.178 4.178 5 N -0.265 5.265 6 C 0.294 3.706 7 O -0.372 6.372 8 C -0.118 4.118 9 H 0.123 0.877 10 C -0.122 4.122 11 C -0.172 4.172 12 C -0.171 4.171 13 C -0.130 4.130 14 C -0.141 4.141 15 S 0.477 5.523 16 C -0.476 4.476 17 S 0.300 5.700 18 C -0.693 4.693 19 H 0.122 0.878 20 C -0.110 4.110 21 N -0.491 5.491 22 Si 0.676 3.324 23 H -0.186 1.186 24 H -0.160 1.160 25 H -0.190 1.190 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.252 0.748 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.288 17.897 -0.508 18.411 hybrid contribution -0.270 0.518 -0.063 0.588 sum 4.018 18.415 -0.571 18.857 Atomic orbital electron populations 1.20146 0.88022 1.02189 1.01902 1.19110 0.96776 0.84623 1.10579 1.65877 1.02904 1.32156 1.19446 1.24025 0.90038 0.93541 1.10152 1.42518 1.04529 1.07983 1.71492 1.20952 0.81731 0.91553 0.76391 1.90728 1.76940 1.22507 1.46995 1.21333 0.94896 0.94620 1.00928 0.87739 1.20464 0.98141 0.96591 0.97029 1.21940 0.94994 0.99475 1.00836 1.22108 0.97290 0.99151 0.98593 1.20489 0.99716 0.93985 0.98783 1.21466 0.91024 0.97339 1.04229 1.86187 1.00573 0.94420 1.71161 1.28164 1.01741 1.04464 1.13202 1.82456 1.13485 0.89196 1.84837 1.22658 0.92391 0.94484 1.59756 0.87772 1.24742 0.97372 0.96232 0.92629 1.70013 1.26455 1.07663 1.44948 0.86814 0.83896 0.81366 0.80362 1.18568 1.15978 1.18988 0.91719 0.91730 0.91105 0.74838 0.89932 0.90256 0.87482 0.87792 0.90422 0.90656 0.90103 0.90704 0.91324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 2 C 0.03 0.63 6.73 -83.96 -0.57 0.07 16 3 N -0.48 -9.41 10.55 -9.78 -0.10 -9.51 16 4 C 0.19 3.64 8.40 -87.19 -0.73 2.90 16 5 N -0.62 -8.70 5.31 -11.78 -0.06 -8.76 16 6 C 0.51 7.07 7.09 -10.99 -0.08 6.99 16 7 O -0.50 -9.09 13.42 5.55 0.07 -9.02 16 8 C -0.10 -0.91 2.57 -91.56 -0.24 -1.15 16 9 H 0.10 0.80 8.13 -51.93 -0.42 0.37 16 10 C -0.08 -0.68 5.28 -28.18 -0.15 -0.83 16 11 C -0.15 -1.12 9.80 -35.90 -0.35 -1.47 16 12 C -0.15 -1.10 9.81 -35.90 -0.35 -1.45 16 13 C -0.09 -0.69 6.11 -28.22 -0.17 -0.86 16 14 C -0.10 -1.00 4.70 -26.55 -0.12 -1.13 16 15 S 0.23 5.14 18.35 -107.50 -1.97 3.17 16 16 C -0.24 -5.44 6.67 29.46 0.20 -5.24 16 17 S 0.05 1.27 18.70 -107.50 -2.01 -0.74 16 18 C -0.54 -15.22 9.80 30.80 0.30 -14.92 16 19 H 0.10 3.12 6.21 -52.49 -0.33 2.80 16 20 C 0.10 2.82 5.49 -17.49 -0.10 2.72 16 21 N -0.86 -24.82 13.98 55.47 0.78 -24.05 16 22 Si 0.85 19.72 27.73 -169.99 -4.71 15.01 16 23 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.24 -5.22 6.73 56.52 0.38 -4.84 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 1.16 7.38 -51.93 -0.38 0.78 16 29 H 0.41 4.37 8.52 -40.82 -0.35 4.02 16 30 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.08 0.50 7.92 -51.92 -0.41 0.09 16 32 H 0.11 0.65 8.06 -52.48 -0.42 0.22 16 33 H 0.10 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.88 7.91 -51.93 -0.41 0.46 16 37 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 38 H 0.28 7.34 8.32 -40.82 -0.34 7.01 16 LS Contribution 340.76 15.07 5.14 5.14 Total: -1.00 -32.07 340.76 -9.71 -41.78 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.84 Total: 2.03 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.00 Total: -15.04 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.61 Total: -42.32 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.07 Total: -9.02 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -4.71 Total: 15.01 kcal Atomic # 16 Polarization: 6.42 SS G_CDS: -3.98 Total: 2.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.07 -9.71 -41.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.842 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds