Wall clock time and date at job start Tue Mar 31 2020 13:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31593 * 122.22481 * 2 1 4 4 C 1.29952 * 117.13777 * 179.97438 * 3 2 1 5 5 N 1.38888 * 125.36785 * 180.02562 * 4 3 2 6 6 C 1.34773 * 120.00066 * 180.02562 * 5 4 3 7 7 O 1.21291 * 120.00111 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00107 * 179.97438 * 6 5 4 9 9 H 1.08997 * 109.64066 * 60.00166 * 8 6 5 10 10 C 1.53020 * 109.64104 * 299.57988 * 8 6 5 11 11 C 1.50067 * 110.14558 * 190.87687 * 10 8 6 12 12 C 1.29444 * 124.07626 * 17.13380 * 11 10 8 13 13 C 1.50060 * 124.07369 * 359.55076 * 12 11 10 14 14 C 1.52948 * 110.30373 * 16.95148 * 13 12 11 15 15 S 1.76144 * 109.26587 * 359.76011 * 4 3 2 16 16 C 1.34656 * 122.23375 * 179.97438 * 2 1 3 17 17 S 1.76200 * 125.92883 * 359.97438 * 16 2 1 18 18 C 1.76203 * 99.99686 * 179.97438 * 17 16 2 19 19 H 1.07994 * 120.00298 * 0.02562 * 18 17 16 20 20 C 1.38427 * 119.99768 * 179.97438 * 18 17 16 21 21 N 1.31813 * 119.99905 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00195 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99690 * 22 20 18 24 24 H 1.48503 * 109.47261 * 329.99870 * 22 20 18 25 25 H 1.48500 * 109.47454 * 209.99864 * 22 20 18 26 26 H 1.09004 * 109.47026 * 270.01969 * 1 2 3 27 27 H 1.08998 * 109.47139 * 30.02453 * 1 2 3 28 28 H 1.09002 * 109.46751 * 150.02435 * 1 2 3 29 29 H 0.97001 * 119.99992 * 0.02562 * 5 4 3 30 30 H 1.08995 * 109.36091 * 311.08921 * 10 8 6 31 31 H 1.09008 * 109.36141 * 70.67427 * 10 8 6 32 32 H 1.08005 * 117.96007 * 197.15543 * 11 10 8 33 33 H 1.08005 * 117.95878 * 179.52956 * 12 11 10 34 34 H 1.09001 * 109.35670 * 137.31736 * 13 12 11 35 35 H 1.08996 * 109.36355 * 257.03716 * 13 12 11 36 36 H 1.09005 * 109.80182 * 191.12122 * 14 13 12 37 37 H 1.08996 * 109.44288 * 70.51113 * 14 13 12 38 38 H 0.97004 * 119.99895 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5031 0.9980 0.0005 5 7 4.4043 2.0548 0.0011 6 6 5.7297 1.8103 0.0011 7 8 6.1355 0.6673 0.0001 8 6 6.7075 2.9570 0.0012 9 1 6.5547 3.5687 0.8902 10 6 6.4999 3.8100 -1.2521 11 6 7.6259 4.7907 -1.4022 12 6 8.7615 4.6905 -0.7890 13 6 9.1072 3.5850 0.1650 14 6 8.1413 2.4120 -0.0095 15 16 3.9346 -0.7098 0.0080 16 6 2.2253 -1.1390 0.0005 17 16 1.5698 -2.7746 0.0019 18 6 3.0668 -3.7040 0.0012 19 1 4.0189 -3.1943 0.0006 20 6 3.0225 -5.0876 0.0025 21 7 4.1423 -5.7828 0.0014 22 14 1.3757 -5.9693 0.0042 23 1 0.9384 -6.2042 -1.3954 24 1 0.3673 -5.1334 0.7041 25 1 1.5119 -7.2712 0.7053 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 4.0798 2.9689 0.0015 30 1 6.4654 3.1626 -2.1283 31 1 5.5577 4.3519 -1.1685 32 1 7.4795 5.6326 -2.0627 33 1 9.5066 5.4497 -0.9760 34 1 10.1256 3.2473 -0.0270 35 1 9.0361 3.9549 1.1878 36 1 8.2699 1.7030 0.8084 37 1 8.3385 1.9182 -0.9610 38 1 4.1112 -6.7524 0.0027 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044789079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:50 Heat of formation + Delta-G solvation = -15.857515 kcal Electronic energy + Delta-G solvation = -21900.185054 eV Core-core repulsion = 18573.223813 eV Total energy + Delta-G solvation = -3326.961242 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79071 -40.32296 -38.75727 -36.22486 -34.82861 -32.77752 -31.89080 -31.50730 -28.80564 -27.91347 -26.16278 -24.46437 -23.49472 -22.35993 -21.16141 -19.80985 -19.21673 -18.90507 -18.18082 -17.47958 -17.25278 -16.90381 -16.67300 -15.98228 -15.62909 -15.33620 -15.00941 -14.76321 -14.50713 -14.44667 -14.06364 -13.62759 -13.50665 -13.39680 -13.25178 -13.18987 -13.16417 -13.10907 -12.43546 -12.15607 -11.99836 -11.93710 -11.75338 -11.44034 -11.31950 -11.17001 -10.81970 -10.59901 -10.56459 -9.86397 -9.62902 -8.62231 -8.53817 -6.35339 -0.29978 0.14669 0.75742 1.05125 1.16369 1.28538 1.39097 1.43800 1.51598 1.65963 1.96859 2.13639 2.50265 2.76572 3.29328 3.60114 3.70334 3.78982 4.14106 4.22831 4.35915 4.36824 4.42906 4.59101 4.65875 4.69446 4.84488 4.88142 4.92836 5.00109 5.03021 5.06766 5.26428 5.30105 5.43867 5.60176 5.77818 5.91750 6.06922 6.07116 6.74159 6.76079 6.82229 8.50510 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.003259 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.070853 B = 8589.579783 C = 9810.523495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.485 5.485 4 C 0.233 3.767 5 N -0.602 5.602 6 C 0.509 3.491 7 O -0.540 6.540 8 C -0.084 4.084 9 H 0.135 0.865 10 C -0.084 4.084 11 C -0.159 4.159 12 C -0.157 4.157 13 C -0.089 4.089 14 C -0.106 4.106 15 S 0.160 5.840 16 C -0.277 4.277 17 S 0.061 5.939 18 C -0.567 4.567 19 H 0.067 0.933 20 C 0.048 3.952 21 N -0.908 5.908 22 Si 0.915 3.085 23 H -0.252 1.252 24 H -0.219 1.219 25 H -0.254 1.254 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.437 0.563 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.709 22.894 -0.409 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.207 5.207 4 C -0.139 4.139 5 N -0.254 5.254 6 C 0.296 3.704 7 O -0.416 6.416 8 C -0.105 4.105 9 H 0.153 0.847 10 C -0.121 4.121 11 C -0.177 4.177 12 C -0.175 4.175 13 C -0.125 4.125 14 C -0.144 4.144 15 S 0.406 5.594 16 C -0.512 4.512 17 S 0.305 5.695 18 C -0.715 4.715 19 H 0.085 0.915 20 C -0.159 4.159 21 N -0.543 5.543 22 Si 0.734 3.266 23 H -0.177 1.177 24 H -0.142 1.142 25 H -0.178 1.178 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.092 0.908 29 H 0.279 0.721 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.761 21.366 -0.402 21.548 hybrid contribution 0.395 -0.187 -0.103 0.448 sum 3.155 21.180 -0.505 21.420 Atomic orbital electron populations 1.20324 0.85057 1.03561 1.03492 1.19856 0.98687 0.83928 1.06385 1.66106 1.02506 1.31179 1.20902 1.24302 0.90403 0.93238 1.05984 1.42688 1.04039 1.07906 1.70720 1.22001 0.81835 0.92187 0.74327 1.90738 1.77451 1.24886 1.48485 1.21427 0.92817 0.93023 1.03266 0.84714 1.20501 0.99951 0.96417 0.95239 1.22024 0.94604 0.99711 1.01329 1.22253 0.97692 0.99206 0.98350 1.20477 0.99155 0.93039 0.99874 1.21467 0.92200 0.98181 1.02545 1.86569 1.02219 0.97965 1.72648 1.28102 1.01500 1.04527 1.17051 1.81874 1.10769 0.89433 1.87385 1.22841 0.93251 0.95455 1.59996 0.91529 1.25736 1.01398 0.96854 0.91890 1.70122 1.29096 1.08256 1.46873 0.85888 0.79220 0.80488 0.81047 1.17654 1.14197 1.17769 0.89855 0.89247 0.90824 0.72122 0.91422 0.87888 0.85791 0.86149 0.89859 0.89284 0.91810 0.92642 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.97 10.02 71.24 0.71 -1.26 16 2 C 0.05 2.07 6.73 41.77 0.28 2.35 16 3 N -0.48 -17.88 10.55 -184.86 -1.95 -19.83 16 4 C 0.23 8.56 8.40 179.15 1.50 10.06 16 5 N -0.60 -15.82 5.31 -309.57 -1.64 -17.46 16 6 C 0.51 13.72 7.09 87.66 0.62 14.35 16 7 O -0.54 -20.35 13.42 -3.06 -0.04 -20.39 16 8 C -0.08 -1.42 2.57 -11.40 -0.03 -1.45 16 9 H 0.14 1.56 8.13 -2.39 -0.02 1.54 16 10 C -0.08 -1.11 5.28 29.66 0.16 -0.95 16 11 C -0.16 -1.80 9.80 27.04 0.27 -1.53 16 12 C -0.16 -1.78 9.81 27.03 0.27 -1.52 16 13 C -0.09 -1.13 6.11 29.63 0.18 -0.95 16 14 C -0.11 -2.01 4.70 30.71 0.14 -1.87 16 15 S 0.16 7.41 18.35 -56.49 -1.04 6.38 16 16 C -0.28 -12.71 6.67 67.00 0.45 -12.27 16 17 S 0.06 2.93 18.70 -56.49 -1.06 1.88 16 18 C -0.57 -33.28 9.80 67.86 0.67 -32.61 16 19 H 0.07 4.31 6.21 -2.91 -0.02 4.29 16 20 C 0.05 2.75 5.49 84.74 0.47 3.22 16 21 N -0.91 -55.12 13.98 21.59 0.30 -54.81 16 22 Si 0.91 41.12 27.73 68.60 1.90 43.02 16 23 H -0.25 -10.91 7.11 99.48 0.71 -10.21 16 24 H -0.22 -9.15 6.73 99.48 0.67 -8.48 16 25 H -0.25 -10.80 7.11 99.48 0.71 -10.09 16 26 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.22 7.38 -2.39 -0.02 2.21 16 29 H 0.44 7.67 8.52 -92.71 -0.79 6.88 16 30 H 0.07 1.12 8.10 -2.39 -0.02 1.10 16 31 H 0.10 0.88 7.92 -2.38 -0.02 0.86 16 32 H 0.12 1.03 8.06 -2.91 -0.02 1.01 16 33 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.42 7.91 -2.38 -0.02 1.40 16 37 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 38 H 0.28 15.60 8.32 -92.71 -0.77 14.83 16 Total: -1.00 -74.13 340.76 2.42 -71.71 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.27 Total: 13.95 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 5.68 Total: -24.43 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -3.29 Total: -92.11 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.04 Total: -20.39 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.90 Total: 43.02 kcal Atomic # 16 Polarization: 10.35 SS G_CDS: -2.09 Total: 8.25 kcal Total: -74.13 2.42 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.848 kcal (2) G-P(sol) polarization free energy of solvation -74.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds