Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22781 * 2 1 4 4 C 1.29939 * 117.13838 * 180.19225 * 3 2 1 5 5 N 1.38896 * 125.36614 * 179.84322 * 4 3 2 6 6 C 1.34777 * 119.99823 * 179.71843 * 5 4 3 7 7 O 1.21286 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46975 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.34410 * 307.28962 * 9 8 6 11 11 C 1.51102 * 110.38599 * 69.69726 * 9 8 6 12 12 C 1.30527 * 111.10270 * 135.24890 * 11 9 8 13 13 C 1.51198 * 111.11340 * 0.02562 * 12 11 9 14 14 C 1.54631 * 110.38528 * 184.99904 * 9 8 6 15 15 S 1.76137 * 109.27125 * 359.57497 * 4 3 2 16 16 C 1.34647 * 122.23490 * 179.72419 * 2 1 3 17 17 S 1.76210 * 125.92817 * 0.05894 * 16 2 1 18 18 C 1.76196 * 99.99825 * 179.97438 * 17 16 2 19 19 H 1.08006 * 120.00509 * 359.97438 * 18 17 16 20 20 C 1.38430 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31814 * 119.99714 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47141 * 59.99480 * 22 20 18 24 24 H 1.48498 * 109.47429 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47348 * 299.99727 * 22 20 18 26 26 H 1.08998 * 109.47940 * 270.27581 * 1 2 3 27 27 H 1.09003 * 109.47400 * 30.27632 * 1 2 3 28 28 H 1.09006 * 109.46855 * 150.27037 * 1 2 3 29 29 H 0.97000 * 120.00231 * 359.71862 * 5 4 3 30 30 H 1.08994 * 109.47193 * 59.99867 * 8 6 5 31 31 H 1.08996 * 109.46772 * 299.99728 * 8 6 5 32 32 H 1.07997 * 124.44801 * 315.26503 * 11 9 8 33 33 H 1.08003 * 124.44329 * 180.02562 * 12 11 9 34 34 H 1.09000 * 110.42455 * 224.75891 * 13 12 11 35 35 H 1.09008 * 110.40054 * 102.35058 * 13 12 11 36 36 H 1.09002 * 111.03841 * 334.58822 * 14 9 8 37 37 H 1.09002 * 111.03772 * 98.48327 * 14 9 8 38 38 H 0.96997 * 119.99876 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9980 -0.0039 5 7 4.4042 2.0548 -0.0076 6 6 5.7296 1.8102 -0.0058 7 8 6.1354 0.6673 -0.0003 8 6 6.7075 2.9570 -0.0104 9 6 8.1360 2.4091 -0.0065 10 1 8.2674 1.6992 0.8102 11 6 8.4527 1.7553 -1.3314 12 6 9.6334 2.1099 -1.7601 13 6 10.3019 3.0594 -0.7918 14 6 9.1559 3.5650 0.1152 15 16 3.9346 -0.7097 0.0042 16 6 2.2251 -1.1389 0.0055 17 16 1.5697 -2.7746 0.0119 18 6 3.0666 -3.7040 0.0164 19 1 4.0188 -3.1942 0.0143 20 6 3.0223 -5.0875 0.0215 21 7 1.8602 -5.7097 0.0235 22 14 4.6092 -6.0729 0.0255 23 1 5.3988 -5.7347 1.2369 24 1 4.2912 -7.5234 0.0315 25 1 5.3993 -5.7439 -1.1880 26 1 -0.3635 0.0049 1.0276 27 1 -0.3634 0.8875 -0.5181 28 1 -0.3633 -0.8925 -0.5097 29 1 4.0797 2.9689 -0.0116 30 1 6.5517 3.5709 0.8766 31 1 6.5527 3.5627 -0.9033 32 1 7.7891 1.0831 -1.8550 33 1 10.0750 1.7697 -2.6852 34 1 10.7565 3.8922 -1.3284 35 1 11.0514 2.5335 -0.2002 36 1 8.7380 4.4972 -0.2648 37 1 9.4944 3.6814 1.1447 38 1 1.8292 -6.6791 0.0275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = 9.170614 kcal Electronic energy + Delta-G solvation = -21749.113219 eV Core-core repulsion = 18423.237279 eV Total energy + Delta-G solvation = -3325.875941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37459 -38.83879 -38.20709 -34.70043 -32.80869 -31.98240 -30.36572 -29.12725 -27.11357 -26.11067 -25.73808 -23.22192 -21.12633 -20.67468 -19.73661 -18.81277 -18.00232 -17.59717 -16.74984 -16.07311 -15.90301 -15.56676 -15.18329 -15.08917 -14.44102 -14.11966 -13.87005 -13.18646 -13.08148 -12.66721 -12.34444 -12.07814 -12.06229 -12.01249 -11.88169 -11.49105 -11.39928 -11.38704 -11.23857 -11.04961 -11.00108 -10.74043 -10.54321 -10.26647 -9.81159 -9.50402 -9.05796 -9.04411 -8.72711 -8.64294 -7.78199 -6.58702 -6.48634 -4.26461 1.41436 1.91095 2.16822 2.50957 2.56634 2.93243 3.09704 3.13253 3.16081 3.36941 3.64317 3.99344 4.30663 4.38065 4.59178 4.72433 4.83789 4.96527 5.05091 5.12418 5.19251 5.25644 5.31112 5.39716 5.56810 5.63694 5.69983 5.95392 5.99179 6.04904 6.16797 6.24160 6.44065 6.48102 6.52376 6.76542 6.99426 7.21493 7.34167 8.02819 8.05251 8.53979 8.89718 10.47101 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003720 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.283894 B = 7524.816852 C = 9513.806379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.188 3.812 5 N -0.618 5.618 6 C 0.503 3.497 7 O -0.502 6.502 8 C -0.123 4.123 9 C -0.056 4.056 10 H 0.094 0.906 11 C -0.143 4.143 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.121 4.121 15 S 0.200 5.800 16 C -0.252 4.252 17 S 0.147 5.853 18 C -0.556 4.556 19 H 0.088 0.912 20 C 0.082 3.918 21 N -0.864 5.864 22 Si 0.924 3.076 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.267 1.267 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.414 0.586 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 17.752 -0.589 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.199 5.199 4 C -0.183 4.183 5 N -0.267 5.267 6 C 0.289 3.711 7 O -0.376 6.376 8 C -0.163 4.163 9 C -0.074 4.074 10 H 0.112 0.888 11 C -0.160 4.160 12 C -0.200 4.200 13 C -0.136 4.136 14 C -0.159 4.159 15 S 0.443 5.557 16 C -0.489 4.489 17 S 0.398 5.602 18 C -0.705 4.705 19 H 0.106 0.894 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.749 3.251 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.192 1.192 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.251 0.749 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.109 16.124 -0.567 19.039 hybrid contribution 1.064 0.321 -0.062 1.113 sum 11.173 16.445 -0.630 19.891 Atomic orbital electron populations 1.20114 0.88106 1.02088 1.01760 1.19026 0.96680 0.84624 1.12010 1.65820 1.02893 1.32378 1.18783 1.23818 0.89892 0.93038 1.11509 1.42509 1.04595 1.07968 1.71653 1.20992 0.81763 0.91831 0.76541 1.90708 1.76931 1.22643 1.47320 1.21660 0.93522 0.96192 1.04885 1.20864 0.91987 0.96706 0.97848 0.88792 1.23330 0.97561 0.99190 0.95958 1.23261 0.96731 1.00395 0.99564 1.21353 0.97891 0.98014 0.96321 1.22557 0.95493 0.97679 1.00164 1.85831 1.01723 0.95487 1.72612 1.28765 1.01360 1.06692 1.12070 1.83062 1.11009 0.84445 1.81718 1.23217 0.93564 0.94042 1.59689 0.89410 1.25018 0.98245 0.96652 0.92936 1.70007 1.24421 1.10367 1.44886 0.86089 0.81209 0.78099 0.79706 1.19219 1.20364 1.19224 0.91906 0.91966 0.91060 0.74922 0.88176 0.88222 0.85560 0.86039 0.91381 0.90847 0.90842 0.90752 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.40 6.73 -83.97 -0.57 -0.16 16 3 N -0.48 -9.60 10.55 -9.79 -0.10 -9.70 16 4 C 0.19 3.60 8.40 -87.20 -0.73 2.87 16 5 N -0.62 -8.71 5.40 -11.78 -0.06 -8.78 16 6 C 0.50 6.76 7.59 -10.98 -0.08 6.67 16 7 O -0.50 -8.77 12.44 5.55 0.07 -8.70 16 8 C -0.12 -1.04 5.09 -27.88 -0.14 -1.18 16 9 C -0.06 -0.53 2.52 -90.71 -0.23 -0.76 16 10 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 11 C -0.14 -1.58 9.26 -35.70 -0.33 -1.91 16 12 C -0.18 -1.73 10.78 -35.65 -0.38 -2.11 16 13 C -0.10 -0.76 6.82 -26.77 -0.18 -0.94 16 14 C -0.12 -0.86 6.71 -25.01 -0.17 -1.03 16 15 S 0.20 4.41 18.35 -107.50 -1.97 2.44 16 16 C -0.25 -5.87 6.67 29.46 0.20 -5.67 16 17 S 0.15 3.74 20.74 -107.50 -2.23 1.51 16 18 C -0.56 -15.29 9.26 30.80 0.29 -15.00 16 19 H 0.09 2.39 5.97 -52.48 -0.31 2.08 16 20 C 0.08 2.22 5.49 -17.49 -0.10 2.12 16 21 N -0.86 -23.97 13.22 55.47 0.73 -23.23 16 22 Si 0.92 20.87 29.55 -169.99 -5.02 15.84 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 29 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.67 8.13 -51.93 -0.42 0.25 16 32 H 0.13 1.63 7.58 -52.49 -0.40 1.24 16 33 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.28 7.16 8.32 -40.82 -0.34 6.82 16 LS Contribution 345.83 15.07 5.21 5.21 Total: -1.00 -31.77 345.83 -10.24 -42.01 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.79 Total: 1.22 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -2.07 Total: -17.82 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.57 Total: -41.72 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 8.14 SS G_CDS: -4.20 Total: 3.94 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.77 -10.24 -42.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.184 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds