Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31596 * 122.22781 * 2 1 4 4 C 1.29939 * 117.13838 * 180.19225 * 3 2 1 5 5 N 1.38896 * 125.36614 * 179.84322 * 4 3 2 6 6 C 1.34777 * 119.99823 * 179.71843 * 5 4 3 7 7 O 1.21286 * 120.00372 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99733 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.46975 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.34410 * 307.28962 * 9 8 6 11 11 C 1.51102 * 110.38599 * 69.69726 * 9 8 6 12 12 C 1.30527 * 111.10270 * 135.24890 * 11 9 8 13 13 C 1.51198 * 111.11340 * 0.02562 * 12 11 9 14 14 C 1.54631 * 110.38528 * 184.99904 * 9 8 6 15 15 S 1.76137 * 109.27125 * 359.57497 * 4 3 2 16 16 C 1.34647 * 122.23490 * 179.72419 * 2 1 3 17 17 S 1.76210 * 125.92817 * 0.05894 * 16 2 1 18 18 C 1.76196 * 99.99825 * 179.97438 * 17 16 2 19 19 H 1.08006 * 120.00509 * 359.97438 * 18 17 16 20 20 C 1.38430 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31814 * 119.99714 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00459 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47141 * 59.99480 * 22 20 18 24 24 H 1.48498 * 109.47429 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47348 * 299.99727 * 22 20 18 26 26 H 1.08998 * 109.47940 * 270.27581 * 1 2 3 27 27 H 1.09003 * 109.47400 * 30.27632 * 1 2 3 28 28 H 1.09006 * 109.46855 * 150.27037 * 1 2 3 29 29 H 0.97000 * 120.00231 * 359.71862 * 5 4 3 30 30 H 1.08994 * 109.47193 * 59.99867 * 8 6 5 31 31 H 1.08996 * 109.46772 * 299.99728 * 8 6 5 32 32 H 1.07997 * 124.44801 * 315.26503 * 11 9 8 33 33 H 1.08003 * 124.44329 * 180.02562 * 12 11 9 34 34 H 1.09000 * 110.42455 * 224.75891 * 13 12 11 35 35 H 1.09008 * 110.40054 * 102.35058 * 13 12 11 36 36 H 1.09002 * 111.03841 * 334.58822 * 14 9 8 37 37 H 1.09002 * 111.03772 * 98.48327 * 14 9 8 38 38 H 0.96997 * 119.99876 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2087 1.1132 0.0000 4 6 3.5030 0.9980 -0.0039 5 7 4.4042 2.0548 -0.0076 6 6 5.7296 1.8102 -0.0058 7 8 6.1354 0.6673 -0.0003 8 6 6.7075 2.9570 -0.0104 9 6 8.1360 2.4091 -0.0065 10 1 8.2674 1.6992 0.8102 11 6 8.4527 1.7553 -1.3314 12 6 9.6334 2.1099 -1.7601 13 6 10.3019 3.0594 -0.7918 14 6 9.1559 3.5650 0.1152 15 16 3.9346 -0.7097 0.0042 16 6 2.2251 -1.1389 0.0055 17 16 1.5697 -2.7746 0.0119 18 6 3.0666 -3.7040 0.0164 19 1 4.0188 -3.1942 0.0143 20 6 3.0223 -5.0875 0.0215 21 7 1.8602 -5.7097 0.0235 22 14 4.6092 -6.0729 0.0255 23 1 5.3988 -5.7347 1.2369 24 1 4.2912 -7.5234 0.0315 25 1 5.3993 -5.7439 -1.1880 26 1 -0.3635 0.0049 1.0276 27 1 -0.3634 0.8875 -0.5181 28 1 -0.3633 -0.8925 -0.5097 29 1 4.0797 2.9689 -0.0116 30 1 6.5517 3.5709 0.8766 31 1 6.5527 3.5627 -0.9033 32 1 7.7891 1.0831 -1.8550 33 1 10.0750 1.7697 -2.6852 34 1 10.7565 3.8922 -1.3284 35 1 11.0514 2.5335 -0.2002 36 1 8.7380 4.4972 -0.2648 37 1 9.4944 3.6814 1.1447 38 1 1.8292 -6.6791 0.0275 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044789725.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = -9.830315 kcal Electronic energy + Delta-G solvation = -21749.937161 eV Core-core repulsion = 18423.237279 eV Total energy + Delta-G solvation = -3326.699883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54344 -40.25029 -39.21678 -36.06895 -34.82380 -32.90468 -31.76432 -29.78599 -28.79067 -27.72889 -27.04276 -24.54188 -22.44081 -21.45441 -21.16050 -19.95392 -19.42041 -19.11478 -18.00769 -17.43898 -17.08426 -17.02906 -16.64895 -16.21542 -15.83984 -15.49544 -15.12386 -14.91932 -14.38468 -13.96004 -13.46379 -13.39766 -13.29496 -13.08357 -13.00909 -12.88908 -12.78931 -12.66935 -12.38544 -12.10982 -12.04934 -12.04095 -11.96825 -11.72286 -11.33437 -11.23506 -10.76046 -10.47169 -10.45533 -9.79989 -9.51428 -8.58349 -8.36519 -6.30551 -0.20865 0.23873 0.84110 1.25671 1.27045 1.34762 1.37167 1.39115 1.52461 1.73046 2.04784 2.13936 2.80673 3.08996 3.44895 3.70517 3.75631 3.92768 3.97598 4.34553 4.43727 4.50515 4.56305 4.67466 4.71714 4.74895 4.84181 4.97251 4.99244 4.99376 5.10166 5.11315 5.28261 5.30261 5.44395 5.48905 5.69413 5.96432 6.00819 6.03201 6.84176 6.86242 6.92160 8.49355 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012851 B = 0.003720 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.283894 B = 7524.816852 C = 9513.806379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.038 3.962 3 N -0.486 5.486 4 C 0.230 3.770 5 N -0.606 5.606 6 C 0.501 3.499 7 O -0.540 6.540 8 C -0.110 4.110 9 C -0.057 4.057 10 H 0.070 0.930 11 C -0.174 4.174 12 C -0.172 4.172 13 C -0.101 4.101 14 C -0.111 4.111 15 S 0.154 5.846 16 C -0.285 4.285 17 S 0.096 5.904 18 C -0.576 4.576 19 H 0.079 0.921 20 C 0.036 3.964 21 N -0.896 5.896 22 Si 0.984 3.016 23 H -0.265 1.265 24 H -0.263 1.263 25 H -0.266 1.266 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.436 0.564 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.968 21.374 -0.327 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 N -0.208 5.208 4 C -0.143 4.143 5 N -0.259 5.259 6 C 0.290 3.710 7 O -0.416 6.416 8 C -0.149 4.149 9 C -0.076 4.076 10 H 0.088 0.912 11 C -0.192 4.192 12 C -0.190 4.190 13 C -0.138 4.138 14 C -0.149 4.149 15 S 0.399 5.601 16 C -0.520 4.520 17 S 0.344 5.656 18 C -0.725 4.725 19 H 0.097 0.903 20 C -0.171 4.171 21 N -0.530 5.530 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.187 1.187 25 H -0.191 1.191 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.278 0.722 30 H 0.157 0.843 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.769 19.822 -0.306 23.054 hybrid contribution 0.703 -0.457 -0.184 0.858 sum 12.471 19.365 -0.491 23.038 Atomic orbital electron populations 1.20242 0.85743 1.03099 1.03072 1.19701 0.98406 0.84227 1.08028 1.66045 1.02774 1.31252 1.20728 1.24213 0.90255 0.93200 1.06676 1.42764 1.04215 1.07785 1.71093 1.22189 0.81709 0.92744 0.74386 1.90715 1.77297 1.24994 1.48572 1.21807 0.90833 0.94247 1.07988 1.20874 0.93481 0.97317 0.95899 0.91152 1.23290 0.98230 1.00314 0.97382 1.23549 0.96052 0.99657 0.99775 1.21431 0.98159 0.98088 0.96095 1.22565 0.94114 0.97185 1.00993 1.86044 1.02202 0.98392 1.73485 1.28572 1.01790 1.05947 1.15674 1.82861 1.11195 0.86331 1.85254 1.23407 0.93860 0.94860 1.60337 0.90268 1.25868 1.01360 0.97397 0.92508 1.70086 1.26134 1.10754 1.46071 0.85204 0.77351 0.77380 0.79563 1.19004 1.18655 1.19068 0.90338 0.89471 0.91444 0.72187 0.84326 0.85322 0.88584 0.85732 0.89537 0.90651 0.88651 0.89382 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.23 0.71 -1.41 16 2 C 0.04 1.58 6.73 41.77 0.28 1.86 16 3 N -0.49 -18.69 10.55 -184.88 -1.95 -20.64 16 4 C 0.23 8.47 8.40 179.15 1.50 9.97 16 5 N -0.61 -15.45 5.40 -309.57 -1.67 -17.12 16 6 C 0.50 12.44 7.59 87.66 0.67 13.10 16 7 O -0.54 -18.85 12.44 -3.05 -0.04 -18.89 16 8 C -0.11 -1.44 5.09 29.85 0.15 -1.28 16 9 C -0.06 -0.96 2.52 -10.86 -0.03 -0.98 16 10 H 0.07 1.51 7.90 -2.39 -0.02 1.49 16 11 C -0.17 -3.74 9.26 26.26 0.24 -3.49 16 12 C -0.17 -3.03 10.78 26.29 0.28 -2.74 16 13 C -0.10 -1.23 6.82 30.57 0.21 -1.03 16 14 C -0.11 -1.13 6.71 31.71 0.21 -0.91 16 15 S 0.15 6.97 18.35 -56.49 -1.04 5.94 16 16 C -0.28 -13.59 6.67 67.00 0.45 -13.14 16 17 S 0.10 5.12 20.74 -56.49 -1.17 3.95 16 18 C -0.58 -33.17 9.26 67.87 0.63 -32.54 16 19 H 0.08 4.55 5.97 -2.91 -0.02 4.54 16 20 C 0.04 2.00 5.49 84.74 0.46 2.46 16 21 N -0.90 -51.43 13.22 21.59 0.29 -51.15 16 22 Si 0.98 43.87 29.55 68.60 2.03 45.89 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.38 7.37 -2.38 -0.02 2.36 16 29 H 0.44 7.33 8.82 -92.71 -0.82 6.52 16 30 H 0.14 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.13 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.10 2.61 7.58 -2.91 -0.02 2.58 16 33 H 0.12 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 0.59 7.91 -2.39 -0.02 0.57 16 37 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.28 14.93 8.32 -92.71 -0.77 14.16 16 Total: -1.00 -73.27 345.83 2.50 -70.77 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.28 Total: 11.39 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 5.78 Total: -30.14 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -3.34 Total: -88.91 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.04 Total: -18.89 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 12.10 SS G_CDS: -2.21 Total: 9.89 kcal Total: -73.27 2.50 -70.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789725.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.936 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds