Wall clock time and date at job start Tue Mar 31 2020 13:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31595 * 122.23115 * 2 1 4 4 C 1.29939 * 117.13590 * 180.26856 * 3 2 1 5 5 N 1.38896 * 125.36630 * 179.77396 * 4 3 2 6 6 C 1.34769 * 120.00394 * 180.02562 * 5 4 3 7 7 O 1.21289 * 120.00219 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99964 * 180.02562 * 6 5 4 9 9 C 1.53005 * 109.46928 * 179.97438 * 8 6 5 10 10 H 1.08997 * 110.34981 * 54.29409 * 9 8 6 11 11 C 1.51107 * 110.38341 * 292.00919 * 9 8 6 12 12 C 1.30535 * 111.10040 * 224.75196 * 11 9 8 13 13 C 1.51100 * 111.10132 * 0.02562 * 12 11 9 14 14 C 1.54636 * 110.38673 * 176.58597 * 9 8 6 15 15 S 1.76143 * 109.27474 * 359.74981 * 4 3 2 16 16 C 1.34658 * 122.22936 * 179.79288 * 2 1 3 17 17 S 1.76197 * 125.93320 * 0.04090 * 16 2 1 18 18 C 1.76199 * 100.00148 * 179.71063 * 17 16 2 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38431 * 119.99970 * 179.97438 * 18 17 16 21 21 N 1.31814 * 119.99809 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00086 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46755 * 90.00163 * 22 20 18 24 24 H 1.48495 * 109.46931 * 210.00177 * 22 20 18 25 25 H 1.48500 * 109.46738 * 330.00419 * 22 20 18 26 26 H 1.09003 * 109.46734 * 270.20310 * 1 2 3 27 27 H 1.09002 * 109.47367 * 30.20382 * 1 2 3 28 28 H 1.09002 * 109.47435 * 150.20820 * 1 2 3 29 29 H 0.97002 * 119.99250 * 359.97438 * 5 4 3 30 30 H 1.08996 * 109.46783 * 299.98958 * 8 6 5 31 31 H 1.08988 * 109.47218 * 59.99663 * 8 6 5 32 32 H 1.07997 * 124.45089 * 44.73021 * 11 9 8 33 33 H 1.07994 * 124.44716 * 180.02562 * 12 11 9 34 34 H 1.09004 * 110.38110 * 135.25146 * 13 12 11 35 35 H 1.08999 * 110.38865 * 257.50943 * 13 12 11 36 36 H 1.09002 * 111.03109 * 261.47609 * 14 9 8 37 37 H 1.09002 * 111.03655 * 25.40743 * 14 9 8 38 38 H 0.96996 * 119.99557 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9978 -0.0054 5 7 4.4044 2.0546 -0.0108 6 6 5.7297 1.8100 -0.0167 7 8 6.1355 0.6669 -0.0168 8 6 6.7076 2.9567 -0.0220 9 6 8.1361 2.4086 -0.0275 10 1 8.2729 1.7152 -0.8572 11 6 8.4429 1.7258 1.2851 12 6 9.6206 2.0707 1.7302 13 6 10.2950 3.0415 0.7890 14 6 9.1569 3.5666 -0.1193 15 16 3.9346 -0.7100 -0.0041 16 6 2.2251 -1.1391 0.0041 17 16 1.5697 -2.7746 0.0090 18 6 3.0666 -3.7041 0.0042 19 1 4.0187 -3.1944 0.0000 20 6 3.0222 -5.0877 0.0068 21 7 1.8600 -5.7098 0.0123 22 14 4.6090 -6.0732 0.0009 23 1 5.0361 -6.3319 1.3994 24 1 4.3865 -7.3655 -0.6959 25 1 5.6658 -5.3054 -0.7055 26 1 -0.3633 0.0036 1.0277 27 1 -0.3634 0.8882 -0.5170 28 1 -0.3634 -0.8918 -0.5106 29 1 4.0799 2.9687 -0.0111 30 1 6.5484 3.5657 -0.9118 31 1 6.5564 3.5671 0.8681 32 1 7.7755 1.0425 1.7890 33 1 10.0557 1.7097 2.6504 34 1 10.7454 3.8616 1.3481 35 1 11.0504 2.5296 0.1927 36 1 9.5026 3.7029 -1.1440 37 1 8.7365 4.4911 0.2764 38 1 1.8289 -6.6792 0.0138 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789727.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:40 Heat of formation + Delta-G solvation = 9.223511 kcal Electronic energy + Delta-G solvation = -21758.033569 eV Core-core repulsion = 18432.159922 eV Total energy + Delta-G solvation = -3325.873647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 324.071 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37711 -38.83461 -38.19938 -34.69985 -32.80939 -31.98270 -30.36566 -29.11602 -27.11358 -26.11188 -25.73953 -23.22283 -21.12552 -20.67453 -19.74043 -18.81133 -17.99588 -17.59494 -16.74346 -16.07851 -15.90150 -15.57214 -15.17028 -15.09155 -14.44046 -14.11917 -13.86470 -13.18449 -13.08527 -12.67337 -12.33512 -12.07219 -12.06282 -12.00927 -11.88198 -11.49540 -11.40171 -11.37695 -11.25426 -11.05028 -10.99475 -10.73529 -10.54221 -10.25134 -9.80661 -9.51337 -9.05224 -9.03964 -8.72923 -8.63871 -7.78160 -6.58975 -6.48609 -4.26562 1.41423 1.91172 2.17489 2.51017 2.56683 2.93243 3.09645 3.10893 3.18070 3.37584 3.64315 3.99173 4.30825 4.38361 4.59083 4.72679 4.83624 4.97138 5.05089 5.12600 5.19202 5.25690 5.31168 5.40186 5.56977 5.63806 5.70215 5.96052 5.99182 6.04843 6.16762 6.24138 6.44672 6.48474 6.52522 6.77327 6.99451 7.21541 7.34353 8.02913 8.05513 8.53990 8.89690 10.46886 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.012838 B = 0.003732 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.575892 B = 7500.092240 C = 9493.936449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.477 5.477 4 C 0.188 3.812 5 N -0.618 5.618 6 C 0.503 3.497 7 O -0.502 6.502 8 C -0.123 4.123 9 C -0.055 4.055 10 H 0.093 0.907 11 C -0.142 4.142 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.121 4.121 15 S 0.200 5.800 16 C -0.252 4.252 17 S 0.147 5.853 18 C -0.556 4.556 19 H 0.089 0.911 20 C 0.082 3.918 21 N -0.863 5.863 22 Si 0.924 3.076 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.265 1.265 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.414 0.586 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.319 17.745 0.412 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 N -0.199 5.199 4 C -0.183 4.183 5 N -0.267 5.267 6 C 0.289 3.711 7 O -0.376 6.376 8 C -0.163 4.163 9 C -0.074 4.074 10 H 0.111 0.889 11 C -0.160 4.160 12 C -0.200 4.200 13 C -0.136 4.136 14 C -0.159 4.159 15 S 0.444 5.556 16 C -0.489 4.489 17 S 0.397 5.603 18 C -0.704 4.704 19 H 0.106 0.894 20 C -0.129 4.129 21 N -0.497 5.497 22 Si 0.749 3.251 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.251 0.749 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.108 16.121 0.404 19.032 hybrid contribution 1.056 0.311 0.078 1.104 sum 11.164 16.432 0.482 19.871 Atomic orbital electron populations 1.20115 0.88107 1.02089 1.01759 1.19030 0.96679 0.84623 1.12008 1.65821 1.02891 1.32378 1.18783 1.23822 0.89892 0.93044 1.11505 1.42509 1.04597 1.07969 1.71647 1.20990 0.81759 0.91831 0.76544 1.90709 1.76927 1.22640 1.47319 1.21658 0.93526 0.96193 1.04880 1.20861 0.92002 0.96521 0.98018 0.88854 1.23349 0.97597 0.99169 0.95880 1.23241 0.96767 1.00341 0.99661 1.21354 0.97903 0.97829 0.96492 1.22578 0.95533 0.97604 1.00152 1.85841 1.01710 0.95471 1.72605 1.28766 1.01365 1.06688 1.12071 1.83064 1.11046 0.84459 1.81718 1.23257 0.93576 0.94033 1.59571 0.89355 1.25023 0.98244 0.96667 0.92948 1.70016 1.24384 1.10297 1.44968 0.86041 0.81295 0.78785 0.79021 1.19622 1.20267 1.18900 0.91913 0.91963 0.91057 0.74925 0.88178 0.88231 0.85491 0.86036 0.91394 0.90884 0.90728 0.90845 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.01 0.36 -0.72 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.16 16 3 N -0.48 -9.60 10.55 -9.78 -0.10 -9.70 16 4 C 0.19 3.60 8.40 -87.19 -0.73 2.87 16 5 N -0.62 -8.71 5.40 -11.78 -0.06 -8.78 16 6 C 0.50 6.76 7.57 -10.99 -0.08 6.67 16 7 O -0.50 -8.77 12.31 5.55 0.07 -8.70 16 8 C -0.12 -1.04 5.10 -27.88 -0.14 -1.18 16 9 C -0.06 -0.53 2.53 -90.71 -0.23 -0.76 16 10 H 0.09 1.04 7.96 -51.93 -0.41 0.63 16 11 C -0.14 -1.59 9.23 -35.70 -0.33 -1.91 16 12 C -0.18 -1.75 10.78 -35.70 -0.38 -2.13 16 13 C -0.10 -0.76 6.81 -26.74 -0.18 -0.94 16 14 C -0.12 -0.86 6.72 -24.93 -0.17 -1.03 16 15 S 0.20 4.41 18.35 -107.50 -1.97 2.44 16 16 C -0.25 -5.87 6.67 29.46 0.20 -5.67 16 17 S 0.15 3.72 20.74 -107.50 -2.23 1.49 16 18 C -0.56 -15.26 9.26 30.80 0.29 -14.97 16 19 H 0.09 2.41 5.97 -52.49 -0.31 2.10 16 20 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 21 N -0.86 -23.96 13.22 55.47 0.73 -23.22 16 22 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 29 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.67 8.14 -51.94 -0.42 0.24 16 32 H 0.13 1.67 7.44 -52.49 -0.39 1.28 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 38 H 0.28 7.12 8.32 -40.82 -0.34 6.78 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -31.79 345.60 -10.24 -42.03 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -4.79 Total: 1.23 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -2.07 Total: -17.83 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.57 Total: -41.70 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.70 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 8.14 SS G_CDS: -4.20 Total: 3.93 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.79 -10.24 -42.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789727.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.251 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds