Wall clock time and date at job start Tue Mar 31 2020 14:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46763 * 300.00110 * 3 2 1 6 6 H 1.48497 * 109.46953 * 60.00067 * 3 2 1 7 7 C 1.38803 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.80990 * 100.00227 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47383 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00087 * 179.97438 * 11 10 9 14 14 C 1.40116 * 119.99845 * 184.62318 * 13 11 10 15 15 C 1.38847 * 120.01049 * 144.91011 * 14 13 11 16 16 C 1.38092 * 119.98312 * 180.27723 * 15 14 13 17 17 C 1.38724 * 120.00868 * 359.49314 * 16 15 14 18 18 O 1.35973 * 119.98385 * 180.25539 * 17 16 15 19 19 C 1.42905 * 116.99645 * 0.25301 * 18 17 16 20 20 C 1.53001 * 109.46965 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47094 * 179.97438 * 20 19 18 22 22 N 1.34784 * 120.00246 * 180.02562 * 21 20 19 23 23 O 1.21279 * 119.99986 * 359.97438 * 21 20 19 24 24 C 1.38713 * 120.03423 * 0.50785 * 17 16 15 25 25 C 1.38096 * 120.01561 * 359.74655 * 24 17 16 26 26 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47404 * 60.00029 * 10 9 7 28 28 H 1.09003 * 109.47192 * 300.00191 * 10 9 7 29 29 H 0.96999 * 120.00173 * 4.62228 * 13 11 10 30 30 H 1.07993 * 120.01157 * 359.97438 * 15 14 13 31 31 H 1.07995 * 119.99592 * 179.74933 * 16 15 14 32 32 H 1.08996 * 109.47072 * 300.00063 * 19 18 17 33 33 H 1.09000 * 109.47330 * 60.00123 * 19 18 17 34 34 H 1.08996 * 109.47486 * 300.00066 * 20 19 18 35 35 H 1.09000 * 109.46787 * 60.00047 * 20 19 18 36 36 H 0.96999 * 119.99620 * 359.97438 * 22 21 20 37 37 H 0.97001 * 119.99987 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.99757 * 179.72750 * 24 17 16 39 39 H 1.07999 * 120.00478 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3558 -7.6528 -0.0975 15 6 3.0764 -8.6126 -0.7956 16 6 2.5917 -9.9018 -0.8959 17 6 1.3904 -10.2404 -0.2905 18 8 0.9162 -11.5113 -0.3852 19 6 1.7096 -12.4468 -1.1184 20 6 1.0204 -13.8128 -1.1153 21 6 1.8568 -14.7991 -1.8890 22 7 1.4439 -16.0753 -2.0210 23 8 2.9009 -14.4443 -2.3937 24 6 0.6700 -9.2820 0.4070 25 6 1.1510 -7.9911 0.5037 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.7989 -6.1852 0.0667 30 1 4.0132 -8.3499 -1.2642 31 1 3.1500 -10.6475 -1.4423 32 1 1.8243 -12.0996 -2.1453 33 1 2.6912 -12.5344 -0.6527 34 1 0.9061 -14.1597 -0.0883 35 1 0.0387 -13.7255 -1.5807 36 1 0.6086 -16.3590 -1.6176 37 1 1.9824 -16.7103 -2.5188 38 1 -0.2674 -9.5452 0.8744 39 1 0.5898 -7.2449 1.0465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048780243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:25 Heat of formation + Delta-G solvation = -89.370297 kcal Electronic energy + Delta-G solvation = -22948.282436 eV Core-core repulsion = 19175.380570 eV Total energy + Delta-G solvation = -3772.901866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61399 -40.06330 -39.31087 -37.27602 -34.31608 -34.22772 -32.45394 -32.24823 -31.01043 -30.02755 -27.73859 -25.51598 -25.20232 -22.79106 -22.27756 -20.94425 -20.19217 -18.62023 -18.07508 -17.74504 -17.38973 -16.90061 -16.76426 -16.49203 -15.71883 -15.21429 -15.06462 -14.82582 -14.49998 -14.28620 -13.98657 -13.69032 -13.41022 -13.40231 -13.24732 -12.85903 -12.51488 -12.46122 -12.09350 -11.95167 -11.21166 -11.08402 -11.04868 -10.92352 -10.78183 -10.60974 -10.29207 -9.84693 -9.82196 -9.46736 -9.09572 -8.97989 -8.28065 -7.70854 -6.53622 -6.24260 -3.95333 1.30363 1.35591 2.04746 2.53594 2.90681 2.97158 3.20596 3.26620 3.30976 3.38743 3.63605 3.79738 4.15239 4.17579 4.45757 4.57691 4.74527 4.82779 4.96212 4.99985 5.11331 5.16395 5.23970 5.30689 5.41931 5.54631 5.66914 5.81197 5.93077 5.98453 6.07563 6.16991 6.24256 6.38873 6.53104 6.69124 6.90948 7.29538 7.54981 7.58084 7.65402 8.33004 8.44316 9.21384 10.83226 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.050910 B = 0.001721 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.862953 B =16262.168068 C =16551.104756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.499 6.499 13 N -0.680 5.680 14 C 0.121 3.879 15 C -0.110 4.110 16 C -0.188 4.188 17 C 0.107 3.893 18 O -0.319 6.319 19 C 0.074 3.926 20 C -0.143 4.143 21 C 0.523 3.477 22 N -0.854 5.854 23 O -0.542 6.542 24 C -0.130 4.130 25 C -0.083 4.083 26 H 0.268 0.732 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.409 0.591 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.404 0.596 37 H 0.404 0.596 38 H 0.133 0.867 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -30.336 -0.922 30.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.372 6.372 13 N -0.327 5.327 14 C 0.027 3.973 15 C -0.131 4.131 16 C -0.208 4.208 17 C 0.062 3.938 18 O -0.233 6.233 19 C -0.002 4.002 20 C -0.183 4.183 21 C 0.308 3.692 22 N -0.418 5.418 23 O -0.419 6.419 24 C -0.149 4.149 25 C -0.103 4.103 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.244 0.756 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.232 0.768 37 H 0.235 0.765 38 H 0.151 0.849 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.924 -30.148 -1.111 30.310 hybrid contribution 2.438 0.865 -0.186 2.594 sum 5.362 -29.283 -1.297 29.798 Atomic orbital electron populations 1.70019 1.05964 1.27421 1.46823 1.24994 0.95027 0.99058 0.94462 0.86106 0.79585 0.81824 0.77922 1.19599 1.20545 1.20546 1.22905 0.94973 0.91548 1.59025 0.90790 1.85413 1.04559 0.96344 1.96742 1.23540 1.06907 0.94682 1.05292 1.20516 0.86525 0.86270 0.74788 1.90694 1.15277 1.85155 1.46033 1.43626 1.10804 1.03700 1.74520 1.17735 0.96107 0.84479 0.99015 1.20690 1.00930 0.92614 0.98833 1.21014 0.97128 0.97621 1.05006 1.18872 0.93382 0.83775 0.97756 1.85956 1.48500 1.17601 1.71280 1.22343 0.94088 0.86863 0.96907 1.21467 1.00663 0.93365 1.02781 1.20357 0.85806 0.83200 0.79815 1.43828 1.27832 1.11520 1.58641 1.90795 1.24330 1.78436 1.48308 1.20341 1.01036 0.91281 1.02246 1.21236 0.95593 0.95526 0.97910 0.92184 0.88842 0.88832 0.75587 0.85464 0.85158 0.91124 0.91173 0.87449 0.87407 0.76766 0.76509 0.84905 0.83266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 11 C 0.53 9.76 7.69 -10.99 -0.08 9.67 16 12 O -0.50 -10.94 13.30 5.55 0.07 -10.87 16 13 N -0.68 -9.47 5.34 -9.83 -0.05 -9.52 16 14 C 0.12 1.70 6.30 -83.62 -0.53 1.17 16 15 C -0.11 -1.30 9.96 -39.41 -0.39 -1.69 16 16 C -0.19 -2.15 9.03 -39.46 -0.36 -2.50 16 17 C 0.11 1.31 6.69 -39.23 -0.26 1.05 16 18 O -0.32 -3.39 10.14 -19.66 -0.20 -3.59 16 19 C 0.07 0.61 4.03 37.16 0.15 0.76 16 20 C -0.14 -0.73 6.07 -27.88 -0.17 -0.90 16 21 C 0.52 3.37 8.10 -10.98 -0.09 3.28 16 22 N -0.85 -2.24 8.87 31.22 0.28 -1.96 16 23 O -0.54 -5.99 16.82 5.56 0.09 -5.90 16 24 C -0.13 -1.70 9.98 -39.46 -0.39 -2.09 16 25 C -0.08 -1.23 8.69 -39.41 -0.34 -1.57 16 26 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 28 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.41 4.23 8.82 -40.82 -0.36 3.87 16 30 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 32 H 0.07 0.63 7.60 -51.93 -0.39 0.23 16 33 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 34 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 -0.17 8.83 -40.82 -0.36 -0.53 16 37 H 0.40 0.84 8.93 -40.82 -0.36 0.48 16 38 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.15 2.48 6.22 -52.49 -0.33 2.15 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -37.32 355.96 -7.61 -44.92 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.61 Total: 2.68 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.05 Total: -8.42 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.96 Total: -36.69 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.03 Total: -20.36 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.32 -7.61 -44.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048780243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.446 kcal (2) G-P(sol) polarization free energy of solvation -37.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds