Wall clock time and date at job start Tue Mar 31 2020 14:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 120.00020 * 2 1 4 4 H 1.48496 * 109.47068 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46763 * 300.00110 * 3 2 1 6 6 H 1.48497 * 109.46953 * 60.00067 * 3 2 1 7 7 C 1.38803 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00208 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.80990 * 100.00227 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47383 * 179.97438 * 10 9 7 12 12 O 1.21292 * 120.00003 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00087 * 179.97438 * 11 10 9 14 14 C 1.40116 * 119.99845 * 184.62318 * 13 11 10 15 15 C 1.38847 * 120.01049 * 144.91011 * 14 13 11 16 16 C 1.38092 * 119.98312 * 180.27723 * 15 14 13 17 17 C 1.38724 * 120.00868 * 359.49314 * 16 15 14 18 18 O 1.35973 * 119.98385 * 180.25539 * 17 16 15 19 19 C 1.42905 * 116.99645 * 0.25301 * 18 17 16 20 20 C 1.53001 * 109.46965 * 179.97438 * 19 18 17 21 21 C 1.50696 * 109.47094 * 179.97438 * 20 19 18 22 22 N 1.34784 * 120.00246 * 180.02562 * 21 20 19 23 23 O 1.21279 * 119.99986 * 359.97438 * 21 20 19 24 24 C 1.38713 * 120.03423 * 0.50785 * 17 16 15 25 25 C 1.38096 * 120.01561 * 359.74655 * 24 17 16 26 26 H 0.97000 * 120.00208 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47404 * 60.00029 * 10 9 7 28 28 H 1.09003 * 109.47192 * 300.00191 * 10 9 7 29 29 H 0.96999 * 120.00173 * 4.62228 * 13 11 10 30 30 H 1.07993 * 120.01157 * 359.97438 * 15 14 13 31 31 H 1.07995 * 119.99592 * 179.74933 * 16 15 14 32 32 H 1.08996 * 109.47072 * 300.00063 * 19 18 17 33 33 H 1.09000 * 109.47330 * 60.00123 * 19 18 17 34 34 H 1.08996 * 109.47486 * 300.00066 * 20 19 18 35 35 H 1.09000 * 109.46787 * 60.00047 * 20 19 18 36 36 H 0.96999 * 119.99620 * 359.97438 * 22 21 20 37 37 H 0.97001 * 119.99987 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.99757 * 179.72750 * 24 17 16 39 39 H 1.07999 * 120.00478 * 179.97438 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8442 -6.3431 -0.0003 14 6 2.3558 -7.6528 -0.0975 15 6 3.0764 -8.6126 -0.7956 16 6 2.5917 -9.9018 -0.8959 17 6 1.3904 -10.2404 -0.2905 18 8 0.9162 -11.5113 -0.3852 19 6 1.7096 -12.4468 -1.1184 20 6 1.0204 -13.8128 -1.1153 21 6 1.8568 -14.7991 -1.8890 22 7 1.4439 -16.0753 -2.0210 23 8 2.9009 -14.4443 -2.3937 24 6 0.6700 -9.2820 0.4070 25 6 1.1510 -7.9911 0.5037 26 1 -0.4850 0.8400 -0.0004 27 1 3.1245 -3.7314 0.8895 28 1 3.1245 -3.7313 -0.8905 29 1 3.7989 -6.1852 0.0667 30 1 4.0132 -8.3499 -1.2642 31 1 3.1500 -10.6475 -1.4423 32 1 1.8243 -12.0996 -2.1453 33 1 2.6912 -12.5344 -0.6527 34 1 0.9061 -14.1597 -0.0883 35 1 0.0387 -13.7255 -1.5807 36 1 0.6086 -16.3590 -1.6176 37 1 1.9824 -16.7103 -2.5188 38 1 -0.2674 -9.5452 0.8744 39 1 0.5898 -7.2449 1.0465 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048780243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:24 Heat of formation + Delta-G solvation = -118.510180 kcal Electronic energy + Delta-G solvation = -22949.546036 eV Core-core repulsion = 19175.380570 eV Total energy + Delta-G solvation = -3774.165466 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65683 -40.84397 -40.23810 -38.34150 -35.49848 -34.70524 -34.58334 -32.88668 -31.98673 -31.38806 -28.92085 -27.64055 -25.90935 -23.73180 -23.36897 -21.66974 -21.22733 -19.90287 -19.40594 -18.60740 -18.21401 -17.87646 -17.51096 -17.38908 -16.87950 -16.79841 -16.30916 -16.12450 -15.84026 -15.37560 -15.00860 -14.69996 -14.54743 -14.51349 -14.39229 -14.03423 -13.73513 -13.61848 -13.16071 -13.07806 -12.91226 -12.77582 -12.59869 -12.02536 -11.79658 -11.72075 -11.17456 -11.15844 -11.04643 -10.81529 -10.66631 -10.28157 -10.00378 -8.77257 -8.64884 -8.34826 -6.12747 0.28210 0.33094 1.24696 1.41991 1.45705 1.54244 1.58260 1.58366 1.90304 2.18320 2.26998 2.77399 2.89037 2.99854 3.29470 3.64788 3.80336 3.88764 3.95053 3.96689 4.18412 4.24370 4.28153 4.39202 4.46001 4.48936 4.61816 4.73905 4.74535 4.94620 5.02113 5.28735 5.34778 5.42897 5.45164 5.82869 5.87660 6.20346 6.37556 6.39963 6.44138 7.06966 7.12651 7.31168 8.74601 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.050910 B = 0.001721 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.862953 B =16262.168068 C =16551.104756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.147 6.147 10 C -0.128 4.128 11 C 0.534 3.466 12 O -0.543 6.543 13 N -0.655 5.655 14 C 0.097 3.903 15 C -0.097 4.097 16 C -0.187 4.187 17 C 0.109 3.891 18 O -0.321 6.321 19 C 0.068 3.932 20 C -0.135 4.135 21 C 0.522 3.478 22 N -0.834 5.834 23 O -0.595 6.595 24 C -0.140 4.140 25 C -0.101 4.101 26 H 0.271 0.729 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.428 0.572 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.421 0.579 37 H 0.409 0.591 38 H 0.141 0.859 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 -31.897 -1.292 32.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.080 5.920 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.419 6.419 13 N -0.303 5.303 14 C 0.003 3.997 15 C -0.117 4.117 16 C -0.206 4.206 17 C 0.064 3.936 18 O -0.235 6.235 19 C -0.008 4.008 20 C -0.175 4.175 21 C 0.308 3.692 22 N -0.398 5.398 23 O -0.476 6.476 24 C -0.159 4.159 25 C -0.121 4.121 26 H 0.080 0.920 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.267 0.733 30 H 0.175 0.825 31 H 0.169 0.831 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.252 0.748 37 H 0.241 0.759 38 H 0.159 0.841 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.958 -31.792 -1.467 32.210 hybrid contribution 1.809 1.073 -0.081 2.105 sum 6.767 -30.719 -1.548 31.494 Atomic orbital electron populations 1.70182 1.07981 1.28563 1.48064 1.26114 0.95939 1.03297 0.93730 0.84906 0.78653 0.76367 0.78026 1.17973 1.20016 1.19982 1.23250 0.95435 0.91929 1.58783 0.89746 1.85594 1.10181 0.99158 1.97069 1.23357 1.03856 0.93397 1.07339 1.20276 0.86257 0.86634 0.74737 1.90694 1.17177 1.85625 1.48413 1.43241 1.11221 1.02880 1.72954 1.17879 0.96590 0.84605 1.00605 1.20958 1.01403 0.91934 0.97419 1.21298 0.96846 0.97969 1.04498 1.18963 0.93385 0.84315 0.96959 1.85960 1.48961 1.17136 1.71418 1.22519 0.94362 0.87780 0.96119 1.21447 1.00699 0.91224 1.04112 1.20565 0.85140 0.84225 0.79316 1.43689 1.28275 1.10343 1.57508 1.90776 1.26622 1.79500 1.50747 1.20398 1.01659 0.91014 1.02853 1.21117 0.96279 0.95841 0.98871 0.91993 0.86598 0.86709 0.73292 0.82478 0.83072 0.91796 0.91341 0.85298 0.85589 0.74751 0.75946 0.84137 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -30.86 9.50 67.96 0.65 -30.22 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.06 20.57 -56.49 -1.16 -9.23 16 10 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 11 C 0.53 19.58 7.69 87.66 0.67 20.26 16 12 O -0.54 -24.73 13.30 -3.07 -0.04 -24.77 16 13 N -0.65 -17.43 5.34 -303.39 -1.62 -19.05 16 14 C 0.10 2.64 6.30 38.11 0.24 2.88 16 15 C -0.10 -2.06 9.96 22.38 0.22 -1.84 16 16 C -0.19 -3.87 9.03 22.35 0.20 -3.67 16 17 C 0.11 2.54 6.69 22.50 0.15 2.69 16 18 O -0.32 -6.30 10.14 -93.25 -0.95 -7.25 16 19 C 0.07 1.01 4.03 71.98 0.29 1.30 16 20 C -0.14 -1.06 6.07 29.85 0.18 -0.88 16 21 C 0.52 5.80 8.10 87.65 0.71 6.51 16 22 N -0.83 -2.48 8.87 -173.53 -1.54 -4.02 16 23 O -0.60 -12.71 16.82 -3.03 -0.05 -12.76 16 24 C -0.14 -3.67 9.98 22.35 0.22 -3.45 16 25 C -0.10 -3.07 8.69 22.38 0.19 -2.88 16 26 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 27 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.43 7.78 8.82 -92.71 -0.82 6.96 16 30 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.15 2.50 6.29 -2.91 -0.02 2.49 16 32 H 0.06 1.05 7.60 -2.39 -0.02 1.03 16 33 H 0.07 1.05 7.63 -2.39 -0.02 1.03 16 34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.42 -1.56 8.83 -92.71 -0.82 -2.38 16 37 H 0.41 0.91 8.93 -92.71 -0.83 0.08 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 39 H 0.12 4.39 6.22 -2.91 -0.02 4.37 16 Total: -1.00 -84.41 355.96 0.26 -84.15 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -1.33 Total: 15.57 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: 4.64 Total: -12.55 kcal Atomic # 7 Polarization: -75.69 SS G_CDS: -2.87 Total: -78.56 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.04 Total: -44.78 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.23 kcal Total: -84.41 0.26 -84.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048780243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.361 kcal (2) G-P(sol) polarization free energy of solvation -84.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds