Wall clock time and date at job start Tue Mar 31 2020 14:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48495 * 109.47227 * 270.00055 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00030 * 3 2 1 6 6 H 1.48505 * 109.47090 * 149.99924 * 3 2 1 7 7 C 1.38800 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00173 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.80993 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00475 * 180.02562 * 11 10 9 14 14 C 1.40124 * 120.00520 * 185.53500 * 13 11 10 15 15 C 1.38719 * 120.08650 * 24.79773 * 14 13 11 16 16 C 1.38200 * 119.98453 * 180.02562 * 15 14 13 17 17 C 1.38274 * 120.16286 * 359.97438 * 16 15 14 18 18 C 1.38246 * 120.17768 * 0.02639 * 17 16 15 19 19 C 1.38544 * 120.01772 * 359.97438 * 18 17 16 20 20 O 1.35976 * 120.08430 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99955 * 359.94973 * 20 19 18 22 22 C 1.53002 * 109.46950 * 180.02562 * 21 20 19 23 23 C 1.50698 * 109.46764 * 180.02562 * 22 21 20 24 24 N 1.34784 * 119.99766 * 180.02562 * 23 22 21 25 25 O 1.21275 * 120.00528 * 0.02562 * 23 22 21 26 26 H 0.97006 * 119.99658 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47389 * 60.00411 * 10 9 7 28 28 H 1.09000 * 109.47426 * 299.99710 * 10 9 7 29 29 H 0.97003 * 119.99771 * 5.53044 * 13 11 10 30 30 H 1.08004 * 120.01067 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.92061 * 180.02562 * 16 15 14 32 32 H 1.07994 * 119.91157 * 179.74388 * 17 16 15 33 33 H 1.08006 * 119.99075 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47001 * 300.00050 * 21 20 19 35 35 H 1.09001 * 109.47101 * 60.00276 * 21 20 19 36 36 H 1.08997 * 109.47220 * 299.99807 * 22 21 20 37 37 H 1.09001 * 109.47082 * 60.00155 * 22 21 20 38 38 H 0.97000 * 119.99773 * 359.97438 * 24 23 22 39 39 H 0.96999 * 120.00150 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0457 -4.4948 -0.0041 14 6 7.4225 -4.7275 0.1129 15 6 8.2372 -3.7869 0.7258 16 6 9.5949 -4.0184 0.8395 17 6 10.1444 -5.1865 0.3440 18 6 9.3387 -6.1285 -0.2681 19 6 7.9767 -5.9041 -0.3861 20 8 7.1829 -6.8299 -0.9874 21 6 7.8203 -8.0118 -1.4762 22 6 6.7749 -8.9277 -2.1157 23 6 7.4471 -10.1744 -2.6306 24 7 6.7178 -11.1315 -3.2378 25 8 8.6442 -10.3165 -2.4985 26 1 -0.4850 0.8401 -0.0004 27 1 3.6433 -3.4310 -0.8927 28 1 3.6440 -3.4322 0.8873 29 1 5.4327 -5.2421 -0.0860 30 1 7.8106 -2.8738 1.1141 31 1 10.2282 -3.2855 1.3173 32 1 11.2065 -5.3614 0.4314 33 1 9.7711 -7.0401 -0.6536 34 1 8.5686 -7.7396 -2.2205 35 1 8.3031 -8.5326 -0.6493 36 1 6.0264 -9.1999 -1.3717 37 1 6.2925 -8.4066 -2.9427 38 1 5.7602 -11.0179 -3.3431 39 1 7.1503 -11.9341 -3.5689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048795297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:28 Heat of formation + Delta-G solvation = -87.240216 kcal Electronic energy + Delta-G solvation = -23660.585640 eV Core-core repulsion = 19887.776141 eV Total energy + Delta-G solvation = -3772.809499 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.83823 -40.04749 -39.15223 -37.35265 -34.64735 -34.24341 -32.46832 -32.31566 -30.76498 -29.80408 -28.20975 -25.64421 -25.29382 -22.87756 -22.19806 -20.93865 -20.26463 -18.81254 -17.95791 -17.74763 -17.38435 -16.80966 -16.79391 -16.58224 -15.65543 -15.22242 -15.08753 -15.02229 -14.90003 -14.38858 -14.02073 -13.81692 -13.52703 -13.47957 -13.33700 -12.82505 -12.52360 -12.28470 -12.03253 -11.70930 -11.40025 -11.27675 -11.06723 -11.03179 -10.67285 -10.59158 -10.43918 -10.25810 -9.88202 -9.50219 -9.03063 -8.63063 -8.55201 -7.81198 -6.95884 -6.31638 -4.04046 1.23886 1.34553 2.07119 2.48299 2.67766 2.82883 3.22872 3.31648 3.36128 3.48294 3.58977 3.78751 4.16248 4.30478 4.46978 4.55598 4.64059 4.78855 4.83476 4.95140 5.04562 5.07488 5.21087 5.24361 5.30948 5.39992 5.55557 5.68765 5.80240 5.95364 6.05754 6.19947 6.21177 6.44818 6.55771 6.71870 6.77222 7.23130 7.47948 7.67826 7.91353 8.31043 8.38993 9.14321 10.77509 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002597 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.847366 B =10778.051662 C =12472.331504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.089 0.911 9 S -0.138 6.138 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.500 6.500 13 N -0.667 5.667 14 C 0.135 3.865 15 C -0.099 4.099 16 C -0.131 4.131 17 C -0.107 4.107 18 C -0.187 4.187 19 C 0.094 3.906 20 O -0.320 6.320 21 C 0.077 3.923 22 C -0.144 4.144 23 C 0.525 3.475 24 N -0.854 5.854 25 O -0.544 6.544 26 H 0.271 0.729 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.414 0.586 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.405 0.595 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.146 -21.391 -3.096 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.088 5.912 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.374 6.374 13 N -0.313 5.313 14 C 0.039 3.961 15 C -0.120 4.120 16 C -0.150 4.150 17 C -0.126 4.126 18 C -0.207 4.207 19 C 0.047 3.953 20 O -0.234 6.234 21 C 0.002 3.998 22 C -0.184 4.184 23 C 0.309 3.691 24 N -0.417 5.417 25 O -0.420 6.420 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.249 0.751 30 H 0.173 0.827 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.233 0.767 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 16.730 -19.611 -2.946 25.945 hybrid contribution -1.309 -1.201 -0.399 1.820 sum 15.421 -20.812 -3.344 26.118 Atomic orbital electron populations 1.69936 1.05915 1.27807 1.47936 1.24712 0.94460 0.98980 0.93148 0.86736 0.81888 0.83275 0.79959 1.19188 1.19911 1.15901 1.22300 0.88140 0.97580 1.58940 0.89304 1.84796 1.09466 0.99461 1.97449 1.23281 0.93072 1.04885 1.06203 1.20477 0.91017 0.81749 0.74973 1.90661 1.58300 1.42141 1.46271 1.43451 1.05496 1.09213 1.73118 1.17173 0.84298 0.93666 1.00973 1.21407 0.93336 0.99781 0.97435 1.21014 0.94729 0.97640 1.01646 1.20899 0.99553 0.93731 0.98384 1.21053 0.91918 1.01899 1.05794 1.18553 0.89723 0.89905 0.97079 1.85886 1.36337 1.28672 1.72502 1.22343 0.94660 0.83904 0.98932 1.21480 0.99822 0.93803 1.03314 1.20329 0.87114 0.84614 0.77008 1.43828 1.12754 1.22760 1.62407 1.90786 1.14929 1.79499 1.56833 0.91901 0.88151 0.87993 0.75053 0.82725 0.85563 0.85875 0.85146 0.91081 0.91094 0.87344 0.87288 0.76678 0.76507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.23 13.97 55.49 0.78 -25.45 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 3 Si 0.86 21.50 27.74 -169.99 -4.71 16.79 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.52 -14.77 10.04 30.94 0.31 -14.45 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 C 0.53 9.34 7.65 -10.98 -0.08 9.25 16 12 O -0.50 -10.35 13.03 5.55 0.07 -10.28 16 13 N -0.67 -9.41 5.29 -9.75 -0.05 -9.46 16 14 C 0.13 1.91 6.45 -83.50 -0.54 1.37 16 15 C -0.10 -1.44 8.72 -39.42 -0.34 -1.79 16 16 C -0.13 -1.57 10.04 -39.58 -0.40 -1.97 16 17 C -0.11 -1.14 10.04 -39.57 -0.40 -1.53 16 18 C -0.19 -2.06 9.04 -39.47 -0.36 -2.42 16 19 C 0.09 1.17 6.70 -39.08 -0.26 0.91 16 20 O -0.32 -3.40 9.55 -19.67 -0.19 -3.59 16 21 C 0.08 0.65 4.03 37.16 0.15 0.80 16 22 C -0.14 -0.81 6.07 -27.88 -0.17 -0.98 16 23 C 0.52 3.61 8.10 -10.98 -0.09 3.52 16 24 N -0.85 -2.78 8.87 31.22 0.28 -2.51 16 25 O -0.54 -6.11 16.82 5.56 0.09 -6.02 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 28 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 29 H 0.41 4.70 8.35 -40.82 -0.34 4.36 16 30 H 0.16 2.53 5.79 -52.48 -0.30 2.23 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.20 6.30 -52.48 -0.33 0.87 16 34 H 0.07 0.63 7.62 -51.93 -0.40 0.24 16 35 H 0.07 0.60 7.62 -51.93 -0.40 0.20 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.40 0.19 8.83 -40.82 -0.36 -0.17 16 39 H 0.40 1.07 8.93 -40.82 -0.36 0.71 16 LS Contribution 351.77 15.07 5.30 5.30 Total: -1.00 -36.29 351.77 -7.08 -43.38 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.61 Total: 3.97 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.05 Total: -6.72 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.00 Total: -37.43 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.02 Total: -19.88 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.29 -7.08 -43.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048795297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.865 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds