Wall clock time and date at job start Tue Mar 31 2020 14:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 120.00054 * 2 1 4 4 H 1.48495 * 109.47227 * 270.00055 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00030 * 3 2 1 6 6 H 1.48505 * 109.47090 * 149.99924 * 3 2 1 7 7 C 1.38800 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00173 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00182 * 179.97438 * 7 2 1 10 10 C 1.80993 * 100.00036 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47226 * 180.02562 * 10 9 7 12 12 O 1.21294 * 119.99949 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00475 * 180.02562 * 11 10 9 14 14 C 1.40124 * 120.00520 * 185.53500 * 13 11 10 15 15 C 1.38719 * 120.08650 * 24.79773 * 14 13 11 16 16 C 1.38200 * 119.98453 * 180.02562 * 15 14 13 17 17 C 1.38274 * 120.16286 * 359.97438 * 16 15 14 18 18 C 1.38246 * 120.17768 * 0.02639 * 17 16 15 19 19 C 1.38544 * 120.01772 * 359.97438 * 18 17 16 20 20 O 1.35976 * 120.08430 * 180.02562 * 19 18 17 21 21 C 1.42898 * 116.99955 * 359.94973 * 20 19 18 22 22 C 1.53002 * 109.46950 * 180.02562 * 21 20 19 23 23 C 1.50698 * 109.46764 * 180.02562 * 22 21 20 24 24 N 1.34784 * 119.99766 * 180.02562 * 23 22 21 25 25 O 1.21275 * 120.00528 * 0.02562 * 23 22 21 26 26 H 0.97006 * 119.99658 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.47389 * 60.00411 * 10 9 7 28 28 H 1.09000 * 109.47426 * 299.99710 * 10 9 7 29 29 H 0.97003 * 119.99771 * 5.53044 * 13 11 10 30 30 H 1.08004 * 120.01067 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.92061 * 180.02562 * 16 15 14 32 32 H 1.07994 * 119.91157 * 179.74388 * 17 16 15 33 33 H 1.08006 * 119.99075 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47001 * 300.00050 * 21 20 19 35 35 H 1.09001 * 109.47101 * 60.00276 * 21 20 19 36 36 H 1.08997 * 109.47220 * 299.99807 * 22 21 20 37 37 H 1.09001 * 109.47082 * 60.00155 * 22 21 20 38 38 H 0.97000 * 119.99773 * 359.97438 * 24 23 22 39 39 H 0.96999 * 120.00150 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0014 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3441 -2.2963 -0.0024 13 7 6.0457 -4.4948 -0.0041 14 6 7.4225 -4.7275 0.1129 15 6 8.2372 -3.7869 0.7258 16 6 9.5949 -4.0184 0.8395 17 6 10.1444 -5.1865 0.3440 18 6 9.3387 -6.1285 -0.2681 19 6 7.9767 -5.9041 -0.3861 20 8 7.1829 -6.8299 -0.9874 21 6 7.8203 -8.0118 -1.4762 22 6 6.7749 -8.9277 -2.1157 23 6 7.4471 -10.1744 -2.6306 24 7 6.7178 -11.1315 -3.2378 25 8 8.6442 -10.3165 -2.4985 26 1 -0.4850 0.8401 -0.0004 27 1 3.6433 -3.4310 -0.8927 28 1 3.6440 -3.4322 0.8873 29 1 5.4327 -5.2421 -0.0860 30 1 7.8106 -2.8738 1.1141 31 1 10.2282 -3.2855 1.3173 32 1 11.2065 -5.3614 0.4314 33 1 9.7711 -7.0401 -0.6536 34 1 8.5686 -7.7396 -2.2205 35 1 8.3031 -8.5326 -0.6493 36 1 6.0264 -9.1999 -1.3717 37 1 6.2925 -8.4066 -2.9427 38 1 5.7602 -11.0179 -3.3431 39 1 7.1503 -11.9341 -3.5689 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048795297.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:27 Heat of formation + Delta-G solvation = -115.336974 kcal Electronic energy + Delta-G solvation = -23661.804007 eV Core-core repulsion = 19887.776141 eV Total energy + Delta-G solvation = -3774.027866 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.86553 -40.75836 -40.15933 -38.27895 -35.85698 -34.71645 -34.66589 -32.92210 -31.99312 -30.78986 -29.38810 -27.83996 -25.97833 -23.90175 -23.09710 -21.73316 -21.25017 -20.02256 -19.48945 -18.42137 -18.14524 -18.04882 -17.46518 -17.38960 -17.09749 -16.78806 -16.25331 -16.06309 -15.86219 -15.66051 -15.25665 -14.91225 -14.75338 -14.58713 -14.44701 -14.15414 -13.70085 -13.35008 -13.07765 -13.03190 -12.93102 -12.69210 -12.58001 -12.19370 -11.86853 -11.76761 -11.59281 -11.18165 -11.16579 -10.86202 -10.67980 -10.54652 -9.60186 -9.01375 -8.80402 -8.50993 -6.21885 0.23245 0.40408 0.95371 1.32307 1.45768 1.50439 1.53994 1.57207 1.81883 2.10875 2.25517 2.69453 2.80413 2.86095 2.87462 3.61791 3.68135 3.89562 3.95542 4.02554 4.16621 4.19752 4.25960 4.42982 4.44801 4.47148 4.56356 4.71484 4.73334 4.86808 5.12542 5.30039 5.45905 5.59204 5.71537 5.80845 5.86479 6.12688 6.30051 6.35170 6.41784 6.94148 7.03043 7.29475 8.61278 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002597 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.847366 B =10778.051662 C =12472.331504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.064 0.936 9 S -0.169 6.169 10 C -0.109 4.109 11 C 0.535 3.465 12 O -0.536 6.536 13 N -0.648 5.648 14 C 0.106 3.894 15 C -0.119 4.119 16 C -0.137 4.137 17 C -0.096 4.096 18 C -0.189 4.189 19 C 0.097 3.903 20 O -0.321 6.321 21 C 0.073 3.927 22 C -0.137 4.137 23 C 0.523 3.477 24 N -0.835 5.835 25 O -0.594 6.594 26 H 0.277 0.723 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.427 0.573 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.150 0.850 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.420 0.580 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.452 -22.917 -3.514 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.083 0.917 9 S 0.057 5.943 10 C -0.260 4.260 11 C 0.322 3.678 12 O -0.413 6.413 13 N -0.294 5.294 14 C 0.011 3.989 15 C -0.139 4.139 16 C -0.156 4.156 17 C -0.115 4.115 18 C -0.208 4.208 19 C 0.049 3.951 20 O -0.235 6.235 21 C -0.003 4.003 22 C -0.177 4.177 23 C 0.308 3.692 24 N -0.399 5.399 25 O -0.475 6.475 26 H 0.086 0.914 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.265 0.735 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.173 0.827 33 H 0.168 0.832 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.252 0.748 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 17.991 -21.206 -3.381 28.014 hybrid contribution -1.648 -0.975 -0.298 1.938 sum 16.343 -22.181 -3.679 27.796 Atomic orbital electron populations 1.70013 1.07283 1.29012 1.49126 1.25549 0.95267 1.02228 0.92937 0.85884 0.80732 0.79678 0.80192 1.18754 1.18422 1.15958 1.22452 0.90154 0.96755 1.58222 0.91734 1.84710 1.06546 1.05394 1.97600 1.23237 0.94546 1.00258 1.07970 1.20156 0.90046 0.82534 0.75014 1.90661 1.58769 1.43470 1.48392 1.43125 1.06150 1.08272 1.71873 1.17296 0.83926 0.94838 1.02862 1.21344 0.94708 0.99289 0.98561 1.21247 0.93878 0.98729 1.01749 1.21283 1.01112 0.92591 0.96492 1.21366 0.91441 1.02678 1.05286 1.18596 0.90370 0.89545 0.96556 1.85881 1.36465 1.29033 1.72158 1.22493 0.95586 0.83353 0.98838 1.21460 0.99234 0.92791 1.04184 1.20536 0.86549 0.85294 0.76778 1.43704 1.13526 1.21995 1.60656 1.90768 1.17025 1.80589 1.59130 0.91369 0.86353 0.86278 0.73497 0.85192 0.83826 0.82708 0.83221 0.91720 0.91165 0.85292 0.85783 0.74813 0.75937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.26 13.97 21.65 0.30 -54.96 16 2 C 0.05 2.65 5.50 84.86 0.47 3.12 16 3 Si 0.91 44.52 27.74 68.60 1.90 46.42 16 4 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 7 C -0.53 -30.23 10.04 67.95 0.68 -29.55 16 8 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 9 S -0.17 -8.36 18.55 -56.49 -1.05 -9.41 16 10 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 11 C 0.54 18.63 7.65 87.66 0.67 19.30 16 12 O -0.54 -22.44 13.03 -3.07 -0.04 -22.48 16 13 N -0.65 -17.68 5.29 -303.14 -1.60 -19.29 16 14 C 0.11 2.92 6.45 38.18 0.25 3.17 16 15 C -0.12 -3.43 8.72 22.38 0.20 -3.24 16 16 C -0.14 -3.09 10.04 22.27 0.22 -2.87 16 17 C -0.10 -1.80 10.04 22.28 0.22 -1.57 16 18 C -0.19 -3.72 9.04 22.34 0.20 -3.51 16 19 C 0.10 2.23 6.70 22.60 0.15 2.38 16 20 O -0.32 -6.18 9.55 -93.28 -0.89 -7.07 16 21 C 0.07 1.08 4.03 71.98 0.29 1.37 16 22 C -0.14 -1.19 6.07 29.85 0.18 -1.01 16 23 C 0.52 6.23 8.10 87.66 0.71 6.94 16 24 N -0.83 -3.56 8.87 -173.53 -1.54 -5.10 16 25 O -0.59 -12.84 16.82 -3.01 -0.05 -12.89 16 26 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 27 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 28 H 0.12 3.98 8.14 -2.40 -0.02 3.96 16 29 H 0.43 9.01 8.35 -92.71 -0.77 8.24 16 30 H 0.13 4.41 5.79 -2.91 -0.02 4.39 16 31 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.15 2.36 6.30 -2.91 -0.02 2.34 16 34 H 0.06 1.05 7.62 -2.39 -0.02 1.03 16 35 H 0.07 1.06 7.62 -2.39 -0.02 1.04 16 36 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.42 -0.80 8.83 -92.71 -0.82 -1.62 16 39 H 0.41 1.38 8.93 -92.71 -0.83 0.55 16 Total: -1.00 -79.85 351.77 0.39 -79.46 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -1.33 Total: 14.37 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: 4.68 Total: -9.06 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.84 Total: -79.35 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.98 Total: -42.44 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.05 Total: -9.41 kcal Total: -79.85 0.39 -79.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048795297.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.879 kcal (2) G-P(sol) polarization free energy of solvation -79.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds