Wall clock time and date at job start Tue Mar 31 2020 13:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47216 * 2 1 4 4 N 1.46506 * 109.47211 * 179.97438 * 3 2 1 5 5 C 1.36818 * 120.00097 * 270.00473 * 4 3 2 6 6 H 1.07998 * 120.00842 * 126.68775 * 5 4 3 7 7 C 1.39052 * 119.99691 * 306.68414 * 5 4 3 8 8 N 1.31374 * 119.99828 * 174.14023 * 7 5 4 9 9 Si 1.86799 * 119.99936 * 354.13479 * 7 5 4 10 10 H 1.48497 * 109.46791 * 94.97273 * 9 7 5 11 11 H 1.48500 * 109.47098 * 214.96900 * 9 7 5 12 12 H 1.48498 * 109.47117 * 334.97085 * 9 7 5 13 13 C 1.34774 * 119.99864 * 89.99950 * 4 3 2 14 14 O 1.21731 * 120.00136 * 3.28762 * 13 4 3 15 15 C 1.46721 * 120.00233 * 183.28674 * 13 4 3 16 16 N 1.38331 * 125.46465 * 352.70493 * 15 13 4 17 17 H 0.96998 * 125.61326 * 0.02562 * 16 15 13 18 18 C 1.37649 * 108.76464 * 180.02562 * 16 15 13 19 19 C 1.39200 * 133.08907 * 180.34516 * 18 16 15 20 20 C 1.37692 * 119.84793 * 180.18673 * 19 18 16 21 21 C 1.39118 * 120.62182 * 359.45301 * 20 19 18 22 22 F 1.35092 * 119.72236 * 180.27891 * 21 20 19 23 23 C 1.36626 * 120.55096 * 0.25433 * 21 20 19 24 24 C 1.40120 * 119.81787 * 0.02562 * 23 21 20 25 25 C 1.36170 * 125.46953 * 172.72827 * 15 13 4 26 26 Cl 1.73605 * 126.14758 * 359.94524 * 25 15 13 27 27 H 1.09001 * 109.47514 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47077 * 300.00028 * 1 2 3 29 29 H 1.09005 * 109.47120 * 59.99572 * 1 2 3 30 30 H 1.09005 * 109.47077 * 239.99972 * 2 1 3 31 31 H 1.09000 * 109.47236 * 119.99951 * 2 1 3 32 32 H 1.08997 * 109.47360 * 60.00006 * 3 2 1 33 33 H 1.09000 * 109.46978 * 300.00109 * 3 2 1 34 34 H 0.97003 * 120.00108 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.07802 * 359.93892 * 19 18 16 36 36 H 1.08000 * 119.69092 * 179.72867 * 20 19 18 37 37 H 1.07996 * 120.08620 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1886 1.4426 1.1858 6 1 4.9425 0.6926 1.3745 7 6 3.9128 2.4084 2.1474 8 7 4.4844 2.3415 3.3284 9 14 2.7296 3.8010 1.7598 10 1 1.3703 3.4433 2.2390 11 1 3.1841 5.0403 2.4401 12 1 2.6940 4.0264 0.2925 13 6 4.1793 1.4423 -1.1663 14 8 3.5726 1.5026 -2.2199 15 6 5.6447 1.3695 -1.1668 16 7 6.4523 1.4406 -0.0459 17 1 6.1429 1.5462 0.8673 18 6 7.7670 1.3367 -0.4400 19 6 8.9719 1.3402 0.2571 20 6 10.1602 1.2196 -0.4278 21 6 10.1695 1.0827 -1.8122 22 9 11.3458 0.9600 -2.4652 23 6 8.9990 1.0706 -2.5167 24 6 7.7779 1.1977 -1.8413 25 6 6.4281 1.2215 -2.2707 26 17 5.8726 1.0857 -3.9099 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 4.2917 3.0150 3.9993 35 1 8.9747 1.4412 1.3324 36 1 11.0938 1.2270 0.1153 37 1 9.0150 0.9635 -3.5912 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:24 Heat of formation + Delta-G solvation = -22.239078 kcal Electronic energy + Delta-G solvation = -25106.455996 eV Core-core repulsion = 21210.961147 eV Total energy + Delta-G solvation = -3895.494849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.60996 -41.22105 -38.92963 -36.31762 -35.91366 -35.51410 -33.33901 -32.00089 -31.71171 -28.98014 -28.60787 -26.31574 -25.34696 -23.28794 -21.84827 -21.44912 -20.64660 -19.47701 -18.50433 -17.32812 -16.82005 -16.36808 -15.59261 -15.39690 -15.38696 -14.74951 -14.54310 -14.36093 -13.94061 -13.89801 -13.73329 -13.38925 -13.20783 -12.95862 -12.67558 -12.46082 -12.40185 -11.85029 -11.75737 -11.50734 -11.21384 -11.12537 -10.98903 -10.93943 -10.61072 -10.35116 -10.30368 -10.02161 -9.53667 -9.40473 -9.04658 -8.05041 -7.85899 -7.37742 -6.88837 -4.77363 0.95260 1.63577 2.37969 2.65498 2.84933 3.00637 3.07705 3.61479 3.79652 3.87570 3.97704 4.03312 4.47769 4.57061 4.85365 5.10183 5.29916 5.43294 5.47455 5.49879 5.61799 5.68075 5.78260 5.88520 5.92682 6.10973 6.17322 6.20495 6.31045 6.35370 6.37785 6.59822 6.64964 6.72287 6.85446 7.08659 7.25197 7.58218 7.71644 8.00502 8.49983 8.88528 9.26723 10.15177 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.004817 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.504736 B = 5811.881240 C = 7117.453066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.106 3.894 4 N -0.462 5.462 5 C -0.375 4.375 6 H 0.104 0.896 7 C 0.077 3.923 8 N -0.851 5.851 9 Si 0.887 3.113 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.255 1.255 13 C 0.546 3.454 14 O -0.553 6.553 15 C 0.100 3.900 16 N -0.534 5.534 17 H 0.448 0.552 18 C 0.088 3.912 19 C -0.087 4.087 20 C -0.136 4.136 21 C 0.065 3.935 22 F -0.148 7.148 23 C -0.102 4.102 24 C -0.082 4.082 25 C -0.084 4.084 26 Cl -0.033 7.033 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.284 0.716 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 -1.530 -3.419 5.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.016 4.016 4 N -0.183 5.183 5 C -0.502 4.502 6 H 0.121 0.879 7 C -0.135 4.135 8 N -0.483 5.483 9 Si 0.713 3.287 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.179 1.179 13 C 0.334 3.666 14 O -0.434 6.434 15 C -0.016 4.016 16 N -0.149 5.149 17 H 0.306 0.694 18 C -0.025 4.025 19 C -0.107 4.107 20 C -0.156 4.156 21 C 0.045 3.955 22 F -0.127 7.127 23 C -0.122 4.122 24 C -0.088 4.088 25 C -0.120 4.120 26 Cl -0.004 7.004 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.312 -1.401 -3.663 5.133 hybrid contribution -0.492 0.666 0.394 0.917 sum 2.820 -0.735 -3.269 4.380 Atomic orbital electron populations 1.21706 0.96104 1.01247 1.01488 1.21781 0.95046 0.97664 1.02587 1.21678 0.81883 0.96797 1.01280 1.43486 1.04356 1.65502 1.04983 1.18950 1.23149 1.15040 0.93079 0.87860 1.25633 0.96141 0.97138 0.94589 1.69621 1.40408 1.34641 1.03622 0.86633 0.80656 0.80944 0.80455 1.19339 1.20902 1.17866 1.17422 0.84360 0.80195 0.84601 1.90782 1.67998 1.53530 1.31116 1.20102 0.91786 1.04463 0.85253 1.44216 1.02539 1.57014 1.11141 0.69445 1.18507 0.86605 1.04322 0.93031 1.19948 0.88571 1.02395 0.99800 1.20721 0.98476 1.04197 0.92222 1.16917 0.80699 1.07522 0.90364 1.91451 1.45644 1.94091 1.81500 1.20141 0.89571 1.02215 1.00228 1.17532 0.91618 1.07409 0.92267 1.19704 0.90865 1.15113 0.86306 1.98306 1.89426 1.96669 1.15992 0.92907 0.92972 0.92860 0.91899 0.91303 0.91837 0.90845 0.90550 0.84690 0.84654 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.13 -2.30 6.26 -26.73 -0.17 -2.47 16 3 C 0.11 2.12 4.00 -4.04 -0.02 2.10 16 4 N -0.46 -10.13 1.95 -116.28 -0.23 -10.36 16 5 C -0.37 -8.45 7.01 -15.02 -0.11 -8.56 16 6 H 0.10 2.41 6.28 -52.49 -0.33 2.08 16 7 C 0.08 1.76 5.45 -17.45 -0.10 1.67 16 8 N -0.85 -20.16 13.95 55.50 0.77 -19.39 16 9 Si 0.89 18.64 24.88 -169.99 -4.23 14.42 16 10 H -0.27 -5.41 6.98 56.52 0.39 -5.02 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.25 -5.57 6.93 56.52 0.39 -5.18 16 13 C 0.55 12.27 7.60 -12.84 -0.10 12.17 16 14 O -0.55 -13.08 14.99 5.16 0.08 -13.00 16 15 C 0.10 2.09 6.70 -82.25 -0.55 1.54 16 16 N -0.53 -10.34 5.43 -7.32 -0.04 -10.38 16 17 H 0.45 8.98 5.05 -40.82 -0.21 8.78 16 18 C 0.09 1.53 7.25 -83.92 -0.61 0.93 16 19 C -0.09 -1.26 10.07 -39.42 -0.40 -1.65 16 20 C -0.14 -1.80 9.99 -39.45 -0.39 -2.20 16 21 C 0.07 0.95 7.24 -39.84 -0.29 0.66 16 22 F -0.15 -2.12 17.25 2.25 0.04 -2.08 16 23 C -0.10 -1.59 10.03 -39.46 -0.40 -1.99 16 24 C -0.08 -1.47 6.16 -106.91 -0.66 -2.12 16 25 C -0.08 -1.65 6.72 -39.02 -0.26 -1.91 16 26 Cl -0.03 -0.60 27.71 -51.86 -1.44 -2.04 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.27 4.24 -51.93 -0.22 1.05 16 33 H 0.07 1.47 7.38 -51.93 -0.38 1.09 16 34 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 35 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 327.74 15.07 4.94 4.94 Total: -1.00 -24.69 327.74 -7.45 -32.14 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -3.67 Total: 9.31 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -3.67 Total: -3.55 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.51 Total: -40.13 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.23 Total: 14.42 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.44 Total: -2.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -24.69 -7.45 -32.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.898 kcal (2) G-P(sol) polarization free energy of solvation -24.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds